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UCD School of Chemical and Bioprocess Engineering

UCD School of Chemical and Bioprocess Engineering - Research Publications 2015/16

Below is the list of research publications for the UCD School of Chemical and Bioprocess Engineering in the academic year 2015/16



Books Chapter

Professor Denis Dowling
Abourayana, H. Dowling D.P. (2015) 'Plasma Processing for Tailoring the Surface Properties of Polymers' In: Mahmood Aliofkhazraei (eds). Surface Energy. -: Intech-Open Access Publisher. , pp.123-152  

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Peer Reviewed Journals

Professor Eoin Casey
Huayu Cao, Olivier Habimana, Ashkan Safari, Rory Heffernan, YIhong Dai, Eoin Casey (2016) 'Revealing region-specific biofilm viscoelastic properties by means of a microrheological approach'. npj Biofilms and Microbiomes .  
M Zanoni, O Habimana, J Amadio, E Casey (2016) 'Antifouling activity of enzyme?functionalized silica nanobeads. Biotechnology and Bioengineering'. Biotechnology and Bioengineering, 113 :501-512. Available Online  
SM Kelleher, O Habimana, J Lawler, B O¿Reilly, S Daniels, E Casey, A Cowley (2015) 'Cicada Wing Surface Topography: An Investigation into the Bactericidal Properties of Nanostructural Features'. ACS applied materials & interfaces . Available Online  
A Safari, Z Tukovic, P Cardiff, M Walter, E Casey, A Ivankovic (2015) 'Interfacial separation of a mature biofilm from a glass surface- A combined experimental and cohesive zone modelling approach'. Journal of the Mechanical Behavior of Biomedical Materials . Available Online  
A Safari, Z Tukovic, M Walter, E Casey, A Ivankovic (2015) 'Mechanical properties of a mature biofilm from a wastewater system: from microscale to macroscale level'. Biofouling . Available Online  
Professor Denis Dowling
Abourayana, H.M. Milosavljevic, V. Dobbyn, P. Cullen, P.J. Dowling, D.P. (2016) 'Investigation of a scalable barrel atmospheric plasma reactor for the treatment of polymer particles'. Surface and Coatings Technology, SCT21438 . Available Online  
Dowling, D.P. Maher, S. Law, V.J. Ardhaoui, M. Stallard, C. Keenan, A. (2016) 'Modified drug release using atmospheric pressure plasma deposited siloxane coatings'. Journal of Physics D - Applied Physics, 49 (36):364005-364014. Available Online  
Congiu, M. Bonomo, M. Marco, M.L.D. Dowling, D.P. Di Carlo, A. Dini, D. Graeff, C.F.O. (2016) 'Cobalt sulfide as counter electrode in p-type dye-sensitized solar cells'.ChemistrySelect, 1 (11):2808-2815. Available Online  
Stallard, C.P. Solar, P. Biederman, H. Dowling D.P. (2016) 'Deposition of non?fouling PEO?like coatings using a low temperature atmospheric pressure plasma jet'. Plasma Processes and Polymers, 13 (2):241-252. Available Online  
Lupoi, R. Stenson, C. McDonnell, K. Ahearne, E. Dowling D.P. (2016) 'Functionalizing polymer surfaces with Cold Spray for applications in bioenvironments'. CIRP Annals - Manufacturing Technology .  
McParland, D Baron, S O'Rourke, S Dowling, D Ahearne, E Parnell, A (2016) 'Prediction of Tool Wear in Turning of Medical Grade Cobalt Chromium Molybdenum Alloy (ASTM F75) Using Data Analytics'. Journal of Intelligent Manufacturing .  
Abourayana, H.M. Barry, J.N. Dobbyn P. Dowling,D.P. (2015) 'Comparison between the Performance of Fluidized Bed and Barrel Rectors for the Plasma Activation of Polymer Particles'. Journal of Mineral, Metal and Materials Engineering, 1 :57-64. Available Online  
Awais, M. Dowling, D. Decker, F. Dini, D. (2015) 'Photoelectrochemical properties of mesoporous NiOx deposited on technical FTO via nanopowder sintering in conventional and plasma atmospheres'. SpringerPlus, 4 (564):1-24. Available Online  
Assoc Professor Niall English
N.J. English and J.-A. Garate (2016) 'Near-Microsecond Human Aquaporin 4 Gating Dynamics in Static and Alternating External Electric Fields: Non-Equilibrium Molecular Dynamics'. Journal of Chemical Physics .  
Z. Futera and N.J. English (2016) 'Electric-Field Effects on Adsorbed-Water Structural and Dynamical Properties at Rutile- and Anatase- TiO2 Surfaces'. Journal of Physical Chemistry C.  
C.J. Burnham and N.J. English (2016) 'Free-energy calculations of the inter-cage hopping barriers of hydrogen molecules in clathrate hydrates'. Journal of Physical Chemistry C .  
P. Marracino, M. Liberti, E. Trapani, C.J. Burnham, M. Avena, J.-A. Garate, F. Apollonio and N.J. English (2016) 'Human Aquaporin 4 Gating Dynamics Under Perpendicularly-Oriented Electric-Field Impulses: A Molecular Dynamics Study'. International Journal of Molecular Sciences .  
C.J. Waldron and N.J. English (2016) 'Time-dependent density fluctuations in liquid water'.Chemical Physics Letters .  
C.J. Burnham and N.J. English (2016) 'Study of clathrate hydrates via equilibrium molecular-dynamics simulation employing polarisable and non-polarisable, rigid and flexible water models'. Journal of Chemical Physics .  
N. Shirsat, A. Mohd, J. Whelan, N.J. English, B. Glennon and M. Al-Rubeai (2016) 'Revisiting Verhulst and Monod models: Analysis of batch and fed-batch cultures'. Cytotechnology .  
G. Rahman, J.M. Morbec, R. Ferradás, V.M. García-Suárez and N.J. English (2016) 'Distortion-induced magnetic phase transition in cubic BaFeO3'. Journal of Magnetism and Magnetic Materials .  
A. Byrne, N.J. English, U. Schwingenschlögl and D.F. Coker (2016) 'Dispersion and solvation effects on the structure and dynamics of N719 dye adsorbed to anatase-titania-101 surfaces in room-temperature ionic liquids: an ab initio molecular simulation study'. Journal of Physical Chemistry C .  
N. Todorova, A. Bentvelzen, N.J. English and I. Yarovsky (2016) 'Electromagnetic-field effects on structure and dynamics of amyloidogenic peptides'. Journal of Chemical Physics .  
C.J. Burnham and N.J. English (2016) 'Librational dynamics in water, sI and sII clathrate hydrates and ice Ih: molecular-dynamics insights'. Journal of Chemical Physics .  
C.J. Waldron, M. Lauricella and N.J. English (2016) 'Structural and Dynamical Properties of Methane Clathrate Hydrates from Molecular Dynamics: Comparison of Atomistic and More Coarse-Grained Potential Models'. Fluid Phase Equilibria .  
N.J. English (2016) 'Diffusivity and mobility of adsorbed water layers at TiO2 rutile and anatase interfaces'. Crystals .  
D. Li, P.J. Stansfeld, M.S.P. Sansom, A. Keogh, L. Vogeley, N. Howe, J.A. Lyons, D. Aragao, P. Fromme, R. Fromme, S. Basu, I. Grotjohann, C. Kupitz, K. Rendek, U. Weierstall, N.A. Zatsepin, V. Cherezov, W. Liu, S. Bandaru, N.J. English, C. Gati, A. Barty, O. Yefanov, H.N. Chapman, K. Diederichs, M. Messerschmidt, S. Boutet, G.J. Williams, M.M Seibert and M. Caffrey (2015) 'Ternary structure reveals mechanism of a membrane diacylglycerol kinase'.Nature Communications, 6 :10140.  
S.N. Chakraborty and N.J. English (2015) 'Hydrogen-bond vibrational and energetic dynamical properties in sI and sII clathrate hydrates and in ice Ih: molecular-dynamics insights'. Journal of Chemical Physics .  
N.J. English and J.S. Tse (2015) 'Massively-parallel molecular dynamics simulation of ice-crystallite pre-cursors in supercooled water: coarsening behaviour and rôle of system size'.Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 92 (3):2132.  
Dr Steven Ferguson
Gary Morris, Graham Power, Steven Ferguson, Mark Barrett, Guangyang Hou, Brian Glennon (2015) 'Estimation of Nucleation and Growth Kinetics of Benzoic Acid by Population Balance Modelling of a Continuous Cooling Mixed Suspension, Mixed Product Removal (MSMPR) Crystallizer'. Organic Process Research and Development,http://pubs.acs.org/doi/abs/10.1021/acs.oprd.5b00139 .  
N Yazdanpanah, S Ferguson, AS Myerson, BL Trout (2015) 'A Novel Technique for Filtration Avoidance in Continuous Crystallization'. Crystal Growth and Design,http://pubs.acs.org/doi/abs/10.1021/acs.cgd.5b01231 .  
Professor Brian Glennon
G. Tully, G. Hou & B. Glennon (2016) 'Solubility of Benzoic Acid and Aspirin in Pure Solvents Using Focused Beam Reflective Measurement'. Journal of Chemical and Engineering Data,61 (1):594-601.  
W. Su, C.L. Li, H.X. Hao, J. Whelan, M. Barrett & B. Glennon (2015) 'Monitoring the liquid phase concentration by Raman spectroscopy in a polymorphic system'. Journal of Raman Spectroscopy, 46 (11):1150-1156.  
G. Morris, G. Power, S. Ferguson, M. Barrett, G. Hou & B. Glennon (2015) 'Estimation of Nucleation and Growth Kinetics of Benzoic Acid by Population Balance Modelling of a Continuous Cooling Mixed Suspension, Mixed Product Removal (MSMPR) Crystallizer'.Organic Process Research and Development .  
G. Power, G. Hou, V.K. Kamaraju, G. Morris, Y. Zhao & B. Glennon (2015) 'Design and optimization of a multistage continuous cooling mixed suspension, mixed product removal crystallizer'. Chemical Engineering Science, 133 :125-139.  
Y. Zhao, V.K. Kamaraju, G. Hou, G. Power, P. Donnellan & B. Glennon (2015) 'Kinetic identification and experimental validation of continuous plug flow crystallisation'. Chemical Engineering Science, 133 :106-115.  
Dr Olivier Habimana
Heffernan, R., Habimana, O., Semiao, A. J. C., Cao, H., Safari, A., Casey, E. (2015) 'A physical impact of organic fouling layers on bacterial adhesion during nanofiltration (vol 67, pg 118, 2014)'. Water Research, 83 :412-413. Available Online  
Zanoni M1, Habimana O1, Amadio J1, Casey E1. (2015) 'Antifouling activity of enzyme-functionalized silica nanobeads'. Biotechnology and Bioengineering .  
Dr Ioscani Jimenez Del Val
Ioscani Jimenez del Val, Karen M Polizzi and Cleo Kontoravdi (2016) 'A theoretical estimate for nucleotide sugar demand towards Chinese Hamster Ovary cellular glycosylation'.Scientific Reports, 6 :28547. Available Online  
Jimenez del Val, Ioscani Fan, Yuzhou Weilguny, Dietmar (2016) 'Dynamics of immature mAb glycoform secretion during CHO cell culture: An integrated modelling framework'.Biotechnology journal, 11 (5):610-623. Available Online  
Assoc Professor Susan McDonnell
Iliet Payan Susan McDonnell Haydee M. Torres Wim F.A. Steelant Séverine Van Slambrouck (2016) 'FAK tyrosine 407 organized with integrin αVβ5 in Hs578Ts(i)8 advanced triple-negative breast cancer cells'. International Journal of Oncology, 48 (5):2043-2054.  

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Conference Publications

Professor Eoin Casey
F Kavousi, M Semmens, E Syron, E Casey (2015) Experimental and numerical study of mass transfer and hydrodynamic performance of confined hollow fiber membrane modulesEuroMembranes, Aachen, Germany,  
Dr Eoin Syron
F Kavousi, M Semmens, E Syron, E Casey (2015) Experimental and numerical study of mass transfer and hydrodynamic performance of confined hollow fiber membrane modulesEuroMembranes, Aachen, Germany,  

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