Below is the list of research publications for the UCD School of Biology & Environmental Science in the academic year 2016/17.
| Dr Wieland Fricke | |
| Fricke W, Knipfer T (2017) 'Plant aquaporins and cell elongation' In: F. Chaumont, S Tyerman (eds). Plant Aquaporins. Berlin Heidelberg: Springer Verlag Berlin Heidelberg. , pp.107-131 | |
| Gambetta G, Knipfer T, Fricke W, McElrone AJ (2017) 'Aquaporins and root water uptake' In: F. Chaumont, S Tyerman (eds). Plant Aquaporins. Berlin Heidelberg: Springer Verlag Berlin Heidelberg. , pp.133-153 | |
| Assoc Professor Paul McCabe | |
| Ansari, K.I., Doyle, S.M., Kacprzyk, J., Khan, M.R., Walter, S., Brennan, J.M., Arunachalam, C.S., McCabe, P.F., and F.M. Doohan (2017) 'Light influences how the fungal toxin deoxynivalenol affects plant cell death and defense responses' In: M. Maresca (eds).Recent Advances and Prespectives in Deoxynivalenol Research. Switzerland: MDPI AG. | |
| McCabe, P. (2017) 'Senesence in Plants' In: eLS (eds). Encyclopedia of Life Science. Chichester: John Wiley and Sons. | |
| Assoc Professor Mary Kelly-Quinn | |
| Kelly-Quinn, M., Biggs, J. & von Fumetti, S (Ed.). (2017) The Importance of Small Water Bodies: Insights from Research. United States: Springer (Hydrobiologia Special Issue). | |
| Dr Emmanuel Reynaud | |
| P. Tomancak and E.G. Reynaud (Ed.). (2017) Light Sheet Microscopy. Germany: Wiley VCH. | |
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Peer Reviewed Journals
| Professor Thomas Bolger | |
Griffiths BS, Römbke J, Schmelz RM, Scheffczyk A, Faber JH, Bloem J, Pérès P, Cluzeau D, Chabbi A, Suhadolc M, Sousa JP, Martins da Silva P, Carvalho F, Mendes S, Morais P, Francisco R, Pereira C, Bonkowski M, Geisen S, Bardgett RD, de Vries FT, Bolger T, Dirilgen T, Schmidt O, Winding A, Hendriksen NB, Johansen A, Philippot L, Plassart P, Bru D, Thomson B, Griffiths RI, Bailey MJ, Keith A, Rutgers M, Mulder C, Hannula SE, Creamer R, Stone D (2016) 'Selecting cost effective and policy-relevant biological indicators for European monitoring of soil biodiversity and ecosystem function'. Ecological Indicators, 69 :213-223.  |
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| Dr Jens Carlsson | |
| Thaler AD, Saleu W, Carlsson J, Schultz TF, Van Dover CL (2017) 'Population structure of Bathymodiolus manusensis, a deep-sea hydrothermal vent-dependent mussel from Manus Basin, Papua New Guinea'. PeerJ, 5 :e3655. | |
| Carlsson JEL, Egan D, Collins PC#, Farrell ED#, Igoe F & Carlsson J (2017) 'A qPCR MGB probe based eDNA assay for European freshwater pearl mussel (Margaritifera margaritifera L.)'. Aquatic Conservation: Marine and Freshwater Ecosystems . | |
| Gargan, LM; Morato, T; Pham, CK; Finarelli, JA; Carlsson, JEL; Carlsson, J (2017) 'Development of a sensitive detection method to survey pelagic biodiversity using eDNA and quantitative PCR: a case study of devil ray at seamounts'. Marine Biology, 164 (5):112-112. | |
| Fernandes, D; Sirak, K; Novak, M; Finarelli, JA; Byrne, J; Connolly, E; Carlsson, JEL; Ferretti, E; Pinhasi, R; Carlsson, J (2017) 'The identification of a 1916 Irish rebel: New approach for estimating relatedness from low coverage homozygous genomes'. Scientific Reports, 7 :41529. | |
| Manuel Vera, Jens Carlsson, Jeanette EL Carlsson, Tom Cross, Sharon Lynch, Pauline Kamermans, Antonio Villalba, Sarah Culloty, Paulino Martinez (2016) 'Current genetic status, temporal stability and structure of the remnant wild European flat oyster populations: conservation and restoring implications'. Marine Biology, 163 . | |
| Dr Benjamin Charlton | |
| Charlton, BD; Taylor, AM; Reby, D (2017) 'Function and evolution of vibrato-like frequency modulation in mammals'. Current Biology . | |
| Charlton, BD; Watchhorn, DJ.; Whisson, DA (2017) 'Subharmonics increase the auditory impact of female koala rejection calls'. Ethology . | |
| Charlton, BD; Reby, D (2016) 'The evolution of acoustic size exaggeration in terrestrial mammals'. Nature Communications, 7 :12739. | |
| Assoc Professor Tasman Crowe | |
| Firth, L. B. Grant, L. M., Crowe, T. P., Ellis, J. S., Wiler, C., Convery, C., O¿Connor, N. E. (2017) 'Factors affecting the prevalence of the trematode parasite Echinostephilla patellae (Lebour, 1911) in the limpet Patella vulgata (L.)'. Journal of Experimental Marine Biology and Ecology . | |
| Janes, H., Kotta, J., Parnojaa, M., Crowe, T. P., Rindi, F., Orav-Kotta, H. (2017) 'Functional traits of macrophytes predict primary production'. Functional Ecology, In press . | |
| Puente A., Guinda X., Juanes J.A., Echavarri-Erasun B., Ramos E., F. de la Hoz C., Degraer S., Kerckhof F., Bojanic N., Rousou M., Orav-Kotta H., Kotta J., Jourde J., Pedrotti M.L., Leclerc J.C., Simon N., Bachelet G., Lavesque N., Arvanitidis C., Pavloudi C., Faulwetter S., Crowe T., Coughlan J., Benedetti-Cecchi L., Dal Bello M., Magni P., Como S., Coppa S., de Lucia A., Ruginis T., Jankowska E., Wes awski J.M., Warzocha J., Silva T., Ribeiro P., Kirienko Fernandes de Matos V., Sousa-Pinto I., Troncoso J., Peleg O., Rilov G., Espinosa F., Pérez-Ruzafa A., Frost M., Hummel H., and van Avesaath P. (2016) 'The role of physical variables in biodiversity patterns of intertidal macroalgae along European coasts'. Journal of the Marine Biological Association of the UK, Published online . | |
| Herbert, R. J. H, Humphreys, J., Davies, C. J., Roberts, C., Fletcher, S., Crowe, T. P. (2016) 'Ecological impacts of non-native Pacific oysters (Crassostrea gigas) and management measures for protected areas in Europe'. Biodiversity and Conservation, 25 :2835-2865. | |
| Dal Bello M, Leclerc J-C, Benedetti-Cecchi L, Arvanitidis C, van Avesaath P, Bachelet G, Bojanic N, Como S, Coppa S, Coughlan J, Crowe T, Degraer S, Espinosa F, Faulwetter S, Frost M, Guinda X, Jankowska E, Jourde J, Kerckhof F, Kotta J, Lavesque N, Andrea de Lucia GA, Magni P, de Matos V, Orav-Kotta H, Pavloudi C, Pedrotti ML, Peleg O, Juanes de la Pena JA, Puente A, Ribeiro P, Rigaut-Jalabert J, Rilov G, Rousou M, Rubal M, Ruginis T, Pérez-Ruzafa A, Silva T, Simon N, Sousa-Pinto I, Troncoso J, Warzocha J, Weslawski JM andHummel H (2016) 'Consistent patterns of spatial variability between NE Atlantic and Mediterranean rocky shores'. Journal of the Marine Biological Association of the UK,Published online . | |
| Brooks, P. R., Nairn, R., Harris, M., Jeffrey, D., Crowe, T. P. (2016) 'Dublin Port and Dublin Bay: reconnecting with nature and people'. Regional Studies in Marine Science, 8 :234-251. | |
| Kotta, J., H. Orav-Kotta, H. Jänes, H. Hummel, C. Arvanitidis, P. Van Avesaath, G. Bachelet, L. Benedetti-Cecchi, N. Bojanic, S. Como, S. Coppa, J. Coughlan, T. Crowe, M. dal Bello, S. Degraer, J. A. Juanes de la Pena, V. Kirienko, F. de Matos, F. Espinosa, S. Faulwetter, M. Frost, X. Guinda, E. Jankowska, J. Jourde, F. Kerckhof, N. Lavesque, J.-C. Leclerc, P. Magni, C. Pavloudi, M. L. Pedrotti, O. Peleg, A. Perez-Ruzafa, A. Puente, P. Ribeiro, G. Rilov, M. Rousou, T. Ruginis, T. Silva, N. Simon, I. Sousa-Pinto, J. Troncoso, J. Warzocha, and J. M. Weslawski (2016) 'Essence of the patterns of cover and richness of intertidal hard bottom communities: a pan-European study'. Journal of the Marine Biological Association of the UK, Published online . | |
| Hummel H., van Avesaath P., Wijnhoven S., Kleine-Schaars L., Degraer S., Kerckhof F., Bojanic N., Skejic S., Vidjak O., Rousou M., Orav-Kotta H., Kotta J., Jourde J., Pedrotti, M.L., Leclerc J., Simon N., Rigaut-Jalabert F., Bachelet G., Lavesque N., Arvanitidis C., Pavloudi C., Faulwetter S., Crowe T., Coughlan J., Benedetti-Cecchi L., Dal Bello M., Magni P., Como S., Coppa S., Ikauniece A., Ruginis T., Jankowska E., Weslawski J.M., Warzocha J., Gromisz S., Witalis B., Silva T., Ribeiro P., Fernandes de Matos V.K., Sousa-Pinto I., Veiga P., Troncoso J., Guinda X., Juanes de la Pena J.A., Puente A., Espinosa F., Pérez-Ruzafa A., Frost M., McNeill C.L., Peleg O. and Rilov, G. (2016) 'Geographic patterns of biodiversity in European coastal marine benthos'. Journal of the Marine Biological Association of the UK, Published online . | |
| Dr Caroline Elliott-Kingston | |
| Steinthorsdottir, M; Elliott-Kingston, C; Bacon, KL (2017) 'Cuticle surfaces of fossil plants as a potential proxy for volcanic SO2 emissions: observations from the Triassic-Jurassic transition of East Greenland'. Palaeobiodiversity and Palaeoenvironments . | |
| Dr John Finarelli | |
| Gargan, LM; Morato, T; Pham, CK; Finarelli, JA; Carlsson, JEL; Carlsson, J (2017) 'Development of a sensitive detection method to survey pelagic biodiversity using eDNA and quantitative PCR: a case study of devil ray at seamounts'. Marine Biology, 164 (5):112-112. | |
| Fernandes, D; Sirak, K; Novak, M; Finarelli, JA; Byrne, J; Connolly, E; Carlsson, JEL; Ferretti, E; Pinhasi, R; Carlsson, J (2017) 'The identification of a 1916 Irish rebel: New approach for estimating relatedness from low coverage homozygous genomes'. Scientific Reports, 7 :41529. | |
| Coates, MI; Gess, RW; Finarelli, JA; Criswell, KE; Tietjen, K (2017) 'A symmoriiform chondrichthyan braincase and the origin of chimaeroid fishes'. Nature, 541 (7636):208-211. | |
| Cheronet, O; Finarelli, JA; Pinhasi, R (2016) 'Morphological change in cranial shape following the transition to agriculture across western Eurasia'. Scientific Reports, 6 :33316. | |
| Dr Wieland Fricke | |
| Meng D, Fricke W. (2017) 'Changes in root hydraulic conductivity facilitate the overall hydraulic response of rice (Oryza sativa L.) cultivars to salt and osmotic stress'. Plant Physiology and Biochemistry - Society for Plant Physiology and Biochemistry, 113 :64-77. | |
| Fricke W. (2016) 'Water transport and energy'. Plant, Cell and Environment . | |
| Dr Ainhoa Gonzalez Del Campo | |
| González, A (2017) 'Mapping environmental sensitivity: A systematic online approach to support environmental assessment and planning'. Environmental Impact Assessment Review, 66 :86-98. | |
| Power, M; González, A; Spey, B (2017) 'Light pollution: Spatial analysis and potential ecological effects in rural Ireland'. Irish Geography, 50 (1). | |
| González, A (2017) 'A conceptualisation framework for building consensus on environmental sensitivity'. Journal of Environmental Management, 200 :114-122. | |
| Dr Tamara Hochstrasser | |
| Tietjen, B., D. R. Schlaepfer, J. B. Bradford, W. K. Lauenroth, S. A. Hall, M. C. Duniway, T. Hochstrasser, G. Jia, S. M. Munson, D. A. Pyke, and S. D. Wilson (2017) 'Climate change-induced vegetation shifts lead to more ecological droughts despite projected rainfall increases in many global temperate drylands'. Global Change Biology, :early view. |
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| Dr Andrew Jackson | |
| Jackson, ALR (2016) 'Environmental governance challenges in post-Brexit Europe: the case of water charging in Ireland'. Australian Environment Review, 31 (6):202-209. | |
| Assoc Professor Mary Kelly-Quinn | |
| Conroy, E., Turner, J.N., Rymszewicz, A., O¿Sullivan, J.J., Bruen, M., Lawler, D.M., Stafford, S., Kelly-Quinn, M. (2017) 'The responses of macroinvertebrate taxa to burial by sediment'. Hydrobiologia . | |
| Kelly-Quinn, M., Biggs, J. & von Fumetti, S. (2017) 'Preface: The importance of small water bodi'. Hydrobiologia, 793 (1):1-2. |
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| Rymszewicz A., O'Sullivan, J.J., Bruen, M., Turner, J.N., Lawler, D.M. E. Conroy, E. & Kelly-Quinn, M. (2017) 'Measurement differences between turbidity instruments, and their implications for suspended sediment concentration and load calculations: A sensor inter-comparison study'. Journal of Environmental Management, 199 (99):108. | |
| Conroy, E, Turner, J.N., Rymszewicz, A, Bruen, M, O'Sullivan, J, Kelly-Quinn, M (2016) 'An Evaluation of Visual and Measurement-Based Methods for Estimating Deposited Fine Sediment'. International Journal of Sediment Research, 31 :368-375. | |
| Ryan, D. & Kelly-Quinn, M. (2016) 'Riparian vegetation management for water temperature regulation: implications for the production of macroinvertebrate prey of salmonids'. Fisheries Management and Ecology, 23 (6):519-530. | |
| O'Callagha, P. & Kelly-Quinn, M. (2016) 'Distribution and structure of lotic macroinvertebrate communities and the influence of environmental factors in a tropical cloud forest, Cusuco National Park, Hondura'. Journal of Limnology . | |
| Hannigan, E., Feeley, H. & Kelly-Quinn, M. (2016) 'Should rare river types be given special consideration under the WFD? Biology and Environment'. Proceedings of the Royal Irish Academy. Section B: Biological, geological, and chemical science, 116B (3):167-177. |
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| Aschale,M., Sileshi,Y., Kelly-Quinn, M. & Hailu, D. (2016) 'Pollution Assessment of Toxic and Potentially Toxic Elements in Agricultural Soils of the City Addis Ababa, Ethiopia'.Bulletin of Environmental Contamination and Toxicology . | |
| Aschale,M., Sileshi,Y., Kelly-Quinn, M.& Hailu, D. (2016) 'Evaluation of potentially toxic element pollution in the benthic sediments of the water bodies of the city of Addis Ababa, Ethiopia'. Journal of Environmental Chemical Engineering, 4 :4173-4183. | |
| Juggins S, Kelly M, Allott T, Kelly-Quinn M, Monteith D (2016) 'A Water Framework Directive-compatible metric for assessing acidification in UK and Irish rivers using diatoms'. Science of the Total Environment, 568 :671-678. | |
| Conroy E., Turner J.N., Rymszewicz A., O'Sullivan J.J., Bruen M., Lawler D., Lally H., M. Kelly-Quinn M. (2016) 'Evaluating the relationship between biotic and sediment metrics using mesocosms and field studies'. Science of the Total Environment, 568 :1092-1101. | |
| Assoc Professor Paul McCabe | |
| Joanna Kacprzyk, Niall P. Brogan, Cara T. Daly, Siamsa M. Doyle, Mark Diamond, Elizabeth M. Molony, Paul F. McCabe (2017) 'The retraction of the protoplast during PCD is an active, and interruptible, calcium-flux driven process'. Plant Science, 260 :50-59. |
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| Dr Andrew McCullagh | |
| McCullagh, A; Black, K; Nieuwenhuis, M (2017) 'Evaluation of tree and stand-level growth models using national forest inventory data'. European Journal of Forest Research, 136 (2):251-28. | |
| Dr Rainer Melzer | |
| Di Stilio, VS; Melzer, R; Hall, JC (2017) 'A broader view for plant evodevo: novel approaches for diverse model systems'. Frontiers in Plant Science, 8 . |
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| Theißen, G., Melzer, R., Rümpler, F. (2016) 'MADS-domain transcription factors and the floral quartet model of flower development: linking plant development and evolution'.Development, 143 (18):3259-3271. |
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| Professor Christoph Mueller | |
| Brenzinger, K., K. Kujala, M. A. Horn, G. Moser, C. Guillet, C. Kammann, C. Müller, and G. Braker (2017) 'Soil conditions rather than long-term exposure to elevated CO2 affect soil microbial communities associated with N-cycling'. Frontiers in Microbiology . | |
| Wang, J., J. Zhang, C. Müller, and Z. Cai (2017) 'Temperature sensitivity of gross N transformation rates in an alpine meadow on the Qinghai-Tibetan Plateau'. Journal of Soils and Sediments, 17 :423-431. | |
| Wang, J., J. Zhang, C. Müller, and Z. Cai (2017) 'Nitrification is the key process determining N use efficiency in paddy soils'. Journal of Soil Science and Plant Nutrition,10.1002/jpln.201700130 . | |
| Liu, S., X. Zhang, J. Zhao, J. Zhang, C. Müller, and Z. Cai (2017) 'Effects of long-term no tillage treatment on gross soil N transformations in black soil in Northeast China'.Geoderma, 301 :42-46. | |
| Kellner, J., S. Multsch, P. Kraft, T. Houska, C. Müller, and L. Breuer (2017) 'A coupled hydrological-plant growth model for simulating the effect of elevated CO2 on a temperate grassland'. Agricultural and Forest Meteorology, 246 :42-50. | |
| Wang, J., Y. Cheng, Y. J. Jiang, B. Sun, J. B. Fan, J. B. Zhang, C. Müller, and Z. C. Cai (2017) 'Effects of 14 years of repeated pig manure applications on gross nitrogen transformations in an upland soil'. Plant and Soil, 415 :161-173. | |
| Kammann, C., S. Ratering, C.-M. Görres, C. Guillet, and C. Müller (2017) 'Stimulation of methane oxidation by CH4-emitting rose chafer larvae in well-aerated grassland soil'.Biology and Fertility of Soils, 53 :491-499. | |
| Houska, T., P. Kraft, R. Liebermann, S. Klatt, D. Kraus, E. Haas, I. Santabarbara, R. Kiese, K. Butterbach-Bahl, C. Müller, and L. Breuer (2017) 'Rejecting hydro-biogeochemical model structures by multi-criteria evaluation'. Environmental Modelling and Software, 93 :1-12. | |
| Senghor, A., R. M. N. Dioh, C. Müller, and I. Youm (2017) 'Cereal crops for biogas production: a review of possible impact of elevated CO2'. Renewable and Sustainable Energy Reviews, 71 :548-554. | |
| Jahangir, M. N. R., O. Fenton, C. Müller, R. Harrington, P. Johnston, and K. G. Richards (2017) 'In situ denitrification and DNRA rates in groundwater beneath an integrated constructed wetland'. Water Research, 111 :254-264. | |
| Harty, M. A., K. L. McGeough, R. Carolan, C. Müller, R. J. Laughlin, G. J. Lanigan, K. G. Richards, and C. J. Watson (2017) 'Effects of urea stabilisers on gross nitrogen transformations in grassland soil'. Soil Biology and Biochemistry, 109 :23-34. | |
| Haider, G., D. Steffens, C. Müller, and C. I. Kammann (2017) 'Biochar reduced nitrate leaching and improved soil moisture content without yield improvements in a four-year field study'. Agriculture, Ecosystems & Enviroment, 237 :80-94. | |
| Schimmelpfennig, S., C. Kammann, J. Mumme, S. Marhan, C. Bamminger, G. Moser, and C. Müller (2017) 'Degradation of Miscanthus X giganteus biochar, hydrochar and feedstock under the influence of disturbance events'. Applied Soil Ecology, 113 :135-150. | |
| Andresen, L. C., N. Yuan, R. Seibert, G. Moser, C. I. Kammann, J. Luterbacher, M. Erbs, and C. Müller (2017) 'Biomass responses in a temperate European grassland through 17 years of elevated CO2'. Global Change Biology, 23 . | |
| Obermeier, W., L. Lehnert, C. Kammann, C. Müller, L. Grünhage, J. Luterbacher, M. Erbs, G. Moser, R. Seibert, N. Yuan, and J. Bendix (2017) 'Reduced CO2 fertilization effect in temperate C3 grasslands under more extreme weather conditions'. Nature Climate Change, 7 :137-141. | |
| Aydogan, E. L., H.-J. Busse, G. Moser, C. Müller, P. Kämpfer, and S. P. Glaeser (2017) 'Proposal of Mucilaginibacter galii sp. nov. isolated from the phyllosphere of Galium album'. International Journal of Systematic and Evolutionary Microbiology, 67 :1318-1326. | |
| Aydogan, E. L., H.-J. Busse, G. Moser, C. Müller, P. Kämpfer, and S. P. Glaeser (2016) 'Proposal of Mucilaginibacter phyllosphaerae sp. nov. isolated from the phyllosphere of Galium album'. International Journal of Systematic and Evolutionary Microbiology, 66 :4138-4147. | |
| Wang, J., L. Wang, X. Feng, H. Hu, Z. Cai, C. Müller, and J. Zhang (2016) 'Soil N transformations and its controlling factors in temperate grasslands in China: A study from 15N tracing experiment to literature synthesis'. Journal of Geophysical Research, 121 :2949-2959. | |
| Khalil, M. I., M. Abdalla, G. Lanigan, B. Osborne, and C. Müller (2016) 'Evaluation of parametric limitations in simulating greenhouse gas fluxes from Irish arable soils using three process-based models'. Agricultural Sciences, 7 :503-520. | |
| Dr Fiachra O'Loughlin | |
| Yamazaki, Dai and Ikeshima, Daiki and Tawatari, Ryunosuke and Yamaguchi, Tomohiro and O'Loughlin, Fiachra and Neal, Jeffery C. and Sampson, Christopher C. and Kanae, Shinjiro and Bates, Paul D. (2017) 'A high-accuracy map of global terrain elevations'.Geophysical Research Letters, 44 (11):5844-5853. |
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| O'Loughlin, FE and Paiva, RCD and Durand, M and Alsdorf, DE and Bates, PD (2016) 'A multi-sensor approach towards a global vegetation corrected SRTM DEM product'. Remote Sensing of Environment, 182 :49-59. | |
| Dr Emmanuel Reynaud | |
| Laissue PP, Alghamdi RA, Tomancak P, Reynaud EG, Shroff H (2017) 'Assessing phototoxicity in live fluorescence imaging'. Nature Methods, 14 (7):657-661. | |
| Mier P, Pérez-Pulido AJ, Reynaud EG, Andrade-Navarro MA. (2017) 'Reading the Evolution of Compartmentalization in the Ribosome Assembly Toolbox: The YRG Protein Family'.PLoS ONE . | |
| Dr Anna Rymszewicz | |
| Ballabio, C., Borrelli, P., Spinoni, J., Meusburger, K., Michaelides, S., Beguería, S., Klik, A., Petan, S., Janeček, M., Olsen, P., Aalto, J., Lakatos, M., Rymszewicz, A., Dumitrescu, A., Tadić, M. P., Diodato, N., Kostalova, J., Rousseva, S., Banasik, K., Alewell, C. & Panagos, P. (2017) 'Mapping monthly rainfall erosivity in Europe'. Science of the Total Environment,579 :1298-1315. | |
| Rymszewicz, A., O'Sullivan, J. J., Bruen, M., Turner, J. N., Lawler, D. M., Conroy, E. & Kelly-Quinn, M. (2017) 'Measurement differences between turbidity instruments, and their implications for suspended sediment concentration and load calculations: A sensor inter-comparison study'. Journal of Environmental Management, 199 :99-108. | |
| Conroy, E., Turner, J. N., Rymszewicz, A., Bruen, M., O׳Sullivan, J. & Kelly-Quinn, M (2016) 'An evaluation of visual and measurement-based methods for estimating deposited fine sediment'. International Journal of Sediment Research, 31 :368-375. | |
| Conroy, E., Turner, J. N., Rymszewicz, A., Bruen, M., O'Sullivan, J. J., Lawler, D. M., Lally, H. & Kelly-Quinn, M. (2016) 'Evaluating the relationship between biotic and sediment metrics using mesocosms and field studies'. Science of the Total Environment,(568):1092-1101. | |
| Professor Jeremy Simpson | |
| Long M, Simpson JC (2017) 'Rho GTPases operating at the Golgi complex: Implications for membrane traffic and cancer biology'. Tissue and Cell, 49 :163-169. | |
| Kranjc T, Dempsey E, Cagney G, Nakamura N, Shields DC, Simpson JC. (2017) 'Functional characterisation of the YIPF protein family in mammalian cells'. Histochemistry and Cell Biology, 147 :439-451. | |
| Caruso ME, Jenna S, Baillie DL, Bossé R, Simpson JC, Chevet E, Taouji S. (2017) 'Systematic functional analysis of the Ras GTPase family unveils a conserved network required for anterograde protein trafficking'. Proteomics, 17 . | |
| Bexiga MG, Simpson JC (2016) 'Genome-Wide siRNA Screening Using Forward Transfection: Identification of Modulators of Membrane Trafficking in Mammalian Cells'.Methods in molecular biology (Clifton, N.J.), 1470 :39-48. | |
| Dr Gavin Stewart | |
| Zhong, C., Kang, J., Stewart, G., Zhou, J., Huang, X., Mi, J., Liu, J., Yang, C., Zhang, Y., and Long, R. (2017) 'Comparison of aquaporin-1 expression between yak (Bos grunniens) and indigenous cattle (Bos taurus) in Qinghai-Tibetan Plateau'. Animal Production Science,57 (8):1618-1623. | |
| McGrane, A. and Stewart, G. (2016) 'Hyperosmolality regulates UT-A6 urea transporter expression in the Caco-2 cell line'. Physiological reports, 4 (17):e12984. | |
| Al-mousawi, H., Ryan, E., McGrane, A., Riveros-Beltran, S., Walpole, C., Dempsey, E., Courtney, D., Fearon, N., Winter, D., Baird, A. and Stewart G. (2016) 'Differential protein abundance of a basolateral MCT1 transporter in the human gastrointestinal tract'. Cell Biology International, 40 (12):1303-1312. | |
| Dr Jonathan Yearsley | |
| Prat-Guitart, N; Belcher, CB; Thompson, DK; Burns, P; Yearsley, JM (2017) 'Fine-scale distribution of moisture in the surface of a degraded blanket bog and its effects on the potential spread of smouldering fire'. Ecohydrology . |
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| Nally, JE; Arent, Z; Bayles, DO; Gilmore, C; Regan, S; McDevitt, A; Yearsley, J; Fanning, S; McMahon, BJ; (2016) 'Emerging infectious disease implications of invasive mammalian species: the greater white-toothed shrew (Crocidura russula) is associated with a novel serovar of pathogenic Leptospira in Ireland'. PLoS Neglected Tropical Diseases, 10 (12):e0005174. |
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| Eldon, B; Riquet, F; Yearsley, J; Jollivet, D; Broquet, T (2016) 'Current hypotheses to explain genetic chaos under the sea'. Current Zoology, 62 (6):551-556. |
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| Dr Charilaos Yiotis | |
| Amanda S. Porter, Charilaos Yiotis, Isabel P. Montañez, Jennifer C. McELwain (2017) 'Evolutionary differences in Δ13C detected between spore and seed bearing plants following exposure to a range of atmospheric O2:CO2 ratios; implications for paleoatmosphere reconstruction'. Geochimica et Cosmochimica Acta . |
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| Yiotis C., Evans-FitzGerald C. and McElwain J.C. (2017) 'Differences in the photosynthetic plasticity of ferns and Ginkgo grown in experimentally controlled low [O2]: high [CO2] atmospheres may explain their contrasting ecological fate across the Triassic-Jurassic mass extinction boundary'. Annals of Botany . | |
| McElwain J.C., Montanez I., White J.D., Wilson J. and Yiotis C. 2017 (2017) 'Reply to Comment on Was atmospheric CO2 capped at 1000 ppm over the past 300 million years? [Palaeogeography, Palaeoclimatology, Palaeoecology 441 (2016) 653¿658]'.Palaeogeography, Palaeoclimatology, Palaeoecology . | |
| Evans-FitzGerald, C; Porter, AS; Yiotis, C; Elliot-Kingston, C; McElwain, JC (2016) 'Co-ordination in morphological leaf traits of early diverging angiosperms is maintained following exposure to experimental palaeo-atmospheric conditions of sub-ambient O2 and elevated CO2'. Frontiers in Plant Science, 7 (1368):1-11. |
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Conference Publications
| Dr Emmanuel Reynaud | |
| Keaveney S.,Colin Keogh C., Gutierrez-Heredia L., and E. G. Reynaud (2016) Applications for advanced 3D imaging, modelling, and printing techniques for the biological sciencesVSMM 2016, | |
| Dr Hugh Feeley | |
| Feeley, HB; Bruen, M; Bullock, C; Christie, M; Kelly, F; Remoundou, K; Siwicka, E; Kelly-Quinn, M. (2016) Ecosystem Services in Freshwaters: ESManage Literature Review Report 187. Environmental Protection Agency, Johnstown Castle, Co Wexford. | |
| Assoc Professor Mary Kelly-Quinn | |
| Hannigan, M. & Kelly-Quinn, M. (2017) Characterising the Biological Communities of Rare River Types. Environmental Protection Agency, Ireland. |
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| Feeley, H.B., Bruen, M., Bullock, C., Christie, M., Kelly, F. & Kelly-Quinn, M. (2017) Irish Freshwater Resources and Assessment of Ecosystem Services Provision. Environmental Protection Agency, Dublin. | |
| Feeley, H. B., Bruen, M., Bullock, C., Christie, M., Kelly, F., Kelly-Quinn, M. (2017) ESManage Project: Irish Freshwater Resources and Assessment of Ecosystem Services Provision. Environmental Protection Agency, Ireland. |
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| Feeley, H.B., Bruen, M., Bullock, C., Christie, M., Kelly, F., Remoundou, K., Siwicka, E. and Kelly-Quinn, M. (2017) ESManage Project: Freshwaters Ecosystem Services. An Introduction for stakeholders. Environmental Protection Agency, Ireland. |
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| Feeley, H.B., Bruen, M., Bullock, C., Christie, M., Kelly, F., Remoundou, K., Siwicka, E. and Kelly-Quinn, M. (2016) ESManage Literature Review: Ecosystem Services in Freshwaters. Environmental Protection Agency, Ireland. |
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| Dr Anna Rymszewicz | |
| Lawler, D., Rymszewicz, A., Conroy, E., O¿Sullivan, J., Bruen, M., Turner, J. & Kelly-Quinn, M. (2017) SILTFLUX Literature Review (2010-W-LS-4). EPA Research Report. Environmental Protection Agency, Wexford, Ireland. | |
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Other Publications
| Dr Wieland Fricke | |
| Fricke (2017) Xylem: Differentiation, Water Transport and Ecology. Chichester, UK: Encyclopedia Entry. | |
| Fricke (2017) Turgor Pressure. Chichester, UK: Encyclopedia Entry. | |
| Dr Emmanuel Reynaud | |
| JM Perkel (2017) Pocket laboratories. Interview. | |
| A. Colonna-Cesari (2017) Leopold et Rudolf Blaschka, Maitres Verriers, Pere et Fils. Paris: Interview. | |
| Dr Wieland Fricke | |
| Fricke W, Knipfer T (2017) 'Plant aquaporins and cell elongation' In: F. Chaumont, S Tyerman (eds). Plant Aquaporins. Berlin Heidelberg: Springer Verlag Berlin Heidelberg. , pp.107-131 | |
| Gambetta G, Knipfer T, Fricke W, McElrone AJ (2017) 'Aquaporins and root water uptake' In: F. Chaumont, S Tyerman (eds). Plant Aquaporins. Berlin Heidelberg: Springer Verlag Berlin Heidelberg. , pp.133-153 | |
| Assoc Professor Paul McCabe | |
| Ansari, K.I., Doyle, S.M., Kacprzyk, J., Khan, M.R., Walter, S., Brennan, J.M., Arunachalam, C.S., McCabe, P.F., and F.M. Doohan (2017) 'Light influences how the fungal toxin deoxynivalenol affects plant cell death and defense responses' In: M. Maresca (eds).Recent Advances and Prespectives in Deoxynivalenol Research. Switzerland: MDPI AG. | |
| McCabe, P. (2017) 'Senesence in Plants' In: eLS (eds). Encyclopedia of Life Science. Chichester: John Wiley and Sons. | |
| Assoc Professor Mary Kelly-Quinn | |
| Kelly-Quinn, M., Biggs, J. & von Fumetti, S (Ed.). (2017) The Importance of Small Water Bodies: Insights from Research. United States: Springer (Hydrobiologia Special Issue). | |
| Dr Emmanuel Reynaud | |
| P. Tomancak and E.G. Reynaud (Ed.). (2017) Light Sheet Microscopy. Germany: Wiley VCH. | |
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Peer Reviewed Journals
| Professor Thomas Bolger | |
| Griffiths BS, Römbke J, Schmelz RM, Scheffczyk A, Faber JH, Bloem J, Pérès P, Cluzeau D, Chabbi A, Suhadolc M, Sousa JP, Martins da Silva P, Carvalho F, Mendes S, Morais P, Francisco R, Pereira C, Bonkowski M, Geisen S, Bardgett RD, de Vries FT, Bolger T, Dirilgen T, Schmidt O, Winding A, Hendriksen NB, Johansen A, Philippot L, Plassart P, Bru D, Thomson B, Griffiths RI, Bailey MJ, Keith A, Rutgers M, Mulder C, Hannula SE, Creamer R, Stone D (2016) 'Selecting cost effective and policy-relevant biological indicators for European monitoring of soil biodiversity and ecosystem function'. Ecological Indicators, 69 :213-223. |
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| Dr Jens Carlsson | |
| Thaler AD, Saleu W, Carlsson J, Schultz TF, Van Dover CL (2017) 'Population structure of Bathymodiolus manusensis, a deep-sea hydrothermal vent-dependent mussel from Manus Basin, Papua New Guinea'. PeerJ, 5 :e3655. | |
| Carlsson JEL, Egan D, Collins PC#, Farrell ED#, Igoe F & Carlsson J (2017) 'A qPCR MGB probe based eDNA assay for European freshwater pearl mussel (Margaritifera margaritifera L.)'. Aquatic Conservation: Marine and Freshwater Ecosystems . | |
| Gargan, LM; Morato, T; Pham, CK; Finarelli, JA; Carlsson, JEL; Carlsson, J (2017) 'Development of a sensitive detection method to survey pelagic biodiversity using eDNA and quantitative PCR: a case study of devil ray at seamounts'. Marine Biology, 164 (5):112-112. | |
| Fernandes, D; Sirak, K; Novak, M; Finarelli, JA; Byrne, J; Connolly, E; Carlsson, JEL; Ferretti, E; Pinhasi, R; Carlsson, J (2017) 'The identification of a 1916 Irish rebel: New approach for estimating relatedness from low coverage homozygous genomes'. Scientific Reports, 7 :41529. | |
| Manuel Vera, Jens Carlsson, Jeanette EL Carlsson, Tom Cross, Sharon Lynch, Pauline Kamermans, Antonio Villalba, Sarah Culloty, Paulino Martinez (2016) 'Current genetic status, temporal stability and structure of the remnant wild European flat oyster populations: conservation and restoring implications'. Marine Biology, 163 . | |
| Dr Benjamin Charlton | |
| Charlton, BD; Taylor, AM; Reby, D (2017) 'Function and evolution of vibrato-like frequency modulation in mammals'. Current Biology . | |
| Charlton, BD; Watchhorn, DJ.; Whisson, DA (2017) 'Subharmonics increase the auditory impact of female koala rejection calls'. Ethology . | |
| Charlton, BD; Reby, D (2016) 'The evolution of acoustic size exaggeration in terrestrial mammals'. Nature Communications, 7 :12739. | |
| Assoc Professor Tasman Crowe | |
| Firth, L. B. Grant, L. M., Crowe, T. P., Ellis, J. S., Wiler, C., Convery, C., O¿Connor, N. E. (2017) 'Factors affecting the prevalence of the trematode parasite Echinostephilla patellae (Lebour, 1911) in the limpet Patella vulgata (L.)'. Journal of Experimental Marine Biology and Ecology . | |
| Janes, H., Kotta, J., Parnojaa, M., Crowe, T. P., Rindi, F., Orav-Kotta, H. (2017) 'Functional traits of macrophytes predict primary production'. Functional Ecology, In press . | |
| Puente A., Guinda X., Juanes J.A., Echavarri-Erasun B., Ramos E., F. de la Hoz C., Degraer S., Kerckhof F., Bojanic N., Rousou M., Orav-Kotta H., Kotta J., Jourde J., Pedrotti M.L., Leclerc J.C., Simon N., Bachelet G., Lavesque N., Arvanitidis C., Pavloudi C., Faulwetter S., Crowe T., Coughlan J., Benedetti-Cecchi L., Dal Bello M., Magni P., Como S., Coppa S., de Lucia A., Ruginis T., Jankowska E., Wes awski J.M., Warzocha J., Silva T., Ribeiro P., Kirienko Fernandes de Matos V., Sousa-Pinto I., Troncoso J., Peleg O., Rilov G., Espinosa F., Pérez-Ruzafa A., Frost M., Hummel H., and van Avesaath P. (2016) 'The role of physical variables in biodiversity patterns of intertidal macroalgae along European coasts'. Journal of the Marine Biological Association of the UK, Published online . | |
| Herbert, R. J. H, Humphreys, J., Davies, C. J., Roberts, C., Fletcher, S., Crowe, T. P. (2016) 'Ecological impacts of non-native Pacific oysters (Crassostrea gigas) and management measures for protected areas in Europe'. Biodiversity and Conservation, 25 :2835-2865. | |
| Dal Bello M, Leclerc J-C, Benedetti-Cecchi L, Arvanitidis C, van Avesaath P, Bachelet G, Bojanic N, Como S, Coppa S, Coughlan J, Crowe T, Degraer S, Espinosa F, Faulwetter S, Frost M, Guinda X, Jankowska E, Jourde J, Kerckhof F, Kotta J, Lavesque N, Andrea de Lucia GA, Magni P, de Matos V, Orav-Kotta H, Pavloudi C, Pedrotti ML, Peleg O, Juanes de la Pena JA, Puente A, Ribeiro P, Rigaut-Jalabert J, Rilov G, Rousou M, Rubal M, Ruginis T, Pérez-Ruzafa A, Silva T, Simon N, Sousa-Pinto I, Troncoso J, Warzocha J, Weslawski JM andHummel H (2016) 'Consistent patterns of spatial variability between NE Atlantic and Mediterranean rocky shores'. Journal of the Marine Biological Association of the UK,Published online . | |
| Brooks, P. R., Nairn, R., Harris, M., Jeffrey, D., Crowe, T. P. (2016) 'Dublin Port and Dublin Bay: reconnecting with nature and people'. Regional Studies in Marine Science, 8 :234-251. | |
| Kotta, J., H. Orav-Kotta, H. Jänes, H. Hummel, C. Arvanitidis, P. Van Avesaath, G. Bachelet, L. Benedetti-Cecchi, N. Bojanic, S. Como, S. Coppa, J. Coughlan, T. Crowe, M. dal Bello, S. Degraer, J. A. Juanes de la Pena, V. Kirienko, F. de Matos, F. Espinosa, S. Faulwetter, M. Frost, X. Guinda, E. Jankowska, J. Jourde, F. Kerckhof, N. Lavesque, J.-C. Leclerc, P. Magni, C. Pavloudi, M. L. Pedrotti, O. Peleg, A. Perez-Ruzafa, A. Puente, P. Ribeiro, G. Rilov, M. Rousou, T. Ruginis, T. Silva, N. Simon, I. Sousa-Pinto, J. Troncoso, J. Warzocha, and J. M. Weslawski (2016) 'Essence of the patterns of cover and richness of intertidal hard bottom communities: a pan-European study'. Journal of the Marine Biological Association of the UK, Published online . | |
| Hummel H., van Avesaath P., Wijnhoven S., Kleine-Schaars L., Degraer S., Kerckhof F., Bojanic N., Skejic S., Vidjak O., Rousou M., Orav-Kotta H., Kotta J., Jourde J., Pedrotti, M.L., Leclerc J., Simon N., Rigaut-Jalabert F., Bachelet G., Lavesque N., Arvanitidis C., Pavloudi C., Faulwetter S., Crowe T., Coughlan J., Benedetti-Cecchi L., Dal Bello M., Magni P., Como S., Coppa S., Ikauniece A., Ruginis T., Jankowska E., Weslawski J.M., Warzocha J., Gromisz S., Witalis B., Silva T., Ribeiro P., Fernandes de Matos V.K., Sousa-Pinto I., Veiga P., Troncoso J., Guinda X., Juanes de la Pena J.A., Puente A., Espinosa F., Pérez-Ruzafa A., Frost M., McNeill C.L., Peleg O. and Rilov, G. (2016) 'Geographic patterns of biodiversity in European coastal marine benthos'. Journal of the Marine Biological Association of the UK, Published online . | |
| Dr Caroline Elliott-Kingston | |
| Steinthorsdottir, M; Elliott-Kingston, C; Bacon, KL (2017) 'Cuticle surfaces of fossil plants as a potential proxy for volcanic SO2 emissions: observations from the Triassic-Jurassic transition of East Greenland'. Palaeobiodiversity and Palaeoenvironments . | |
| Dr John Finarelli | |
| Gargan, LM; Morato, T; Pham, CK; Finarelli, JA; Carlsson, JEL; Carlsson, J (2017) 'Development of a sensitive detection method to survey pelagic biodiversity using eDNA and quantitative PCR: a case study of devil ray at seamounts'. Marine Biology, 164 (5):112-112. | |
| Fernandes, D; Sirak, K; Novak, M; Finarelli, JA; Byrne, J; Connolly, E; Carlsson, JEL; Ferretti, E; Pinhasi, R; Carlsson, J (2017) 'The identification of a 1916 Irish rebel: New approach for estimating relatedness from low coverage homozygous genomes'. Scientific Reports, 7 :41529. | |
| Coates, MI; Gess, RW; Finarelli, JA; Criswell, KE; Tietjen, K (2017) 'A symmoriiform chondrichthyan braincase and the origin of chimaeroid fishes'. Nature, 541 (7636):208-211. | |
| Cheronet, O; Finarelli, JA; Pinhasi, R (2016) 'Morphological change in cranial shape following the transition to agriculture across western Eurasia'. Scientific Reports, 6 :33316. | |
| Dr Wieland Fricke | |
| Meng D, Fricke W. (2017) 'Changes in root hydraulic conductivity facilitate the overall hydraulic response of rice (Oryza sativa L.) cultivars to salt and osmotic stress'. Plant Physiology and Biochemistry - Society for Plant Physiology and Biochemistry, 113 :64-77. | |
| Fricke W. (2016) 'Water transport and energy'. Plant, Cell and Environment . | |
| Dr Ainhoa Gonzalez Del Campo | |
| González, A (2017) 'Mapping environmental sensitivity: A systematic online approach to support environmental assessment and planning'. Environmental Impact Assessment Review, 66 :86-98. | |
| Power, M; González, A; Spey, B (2017) 'Light pollution: Spatial analysis and potential ecological effects in rural Ireland'. Irish Geography, 50 (1). | |
| González, A (2017) 'A conceptualisation framework for building consensus on environmental sensitivity'. Journal of Environmental Management, 200 :114-122. | |
| Dr Tamara Hochstrasser | |
| Tietjen, B., D. R. Schlaepfer, J. B. Bradford, W. K. Lauenroth, S. A. Hall, M. C. Duniway, T. Hochstrasser, G. Jia, S. M. Munson, D. A. Pyke, and S. D. Wilson (2017) 'Climate change-induced vegetation shifts lead to more ecological droughts despite projected rainfall increases in many global temperate drylands'. Global Change Biology, :early view. |
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| Dr Andrew Jackson | |
| Jackson, ALR (2016) 'Environmental governance challenges in post-Brexit Europe: the case of water charging in Ireland'. Australian Environment Review, 31 (6):202-209. | |
| Assoc Professor Mary Kelly-Quinn | |
| Conroy, E., Turner, J.N., Rymszewicz, A., O¿Sullivan, J.J., Bruen, M., Lawler, D.M., Stafford, S., Kelly-Quinn, M. (2017) 'The responses of macroinvertebrate taxa to burial by sediment'. Hydrobiologia . | |
| Kelly-Quinn, M., Biggs, J. & von Fumetti, S. (2017) 'Preface: The importance of small water bodi'. Hydrobiologia, 793 (1):1-2. |
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| Rymszewicz A., O'Sullivan, J.J., Bruen, M., Turner, J.N., Lawler, D.M. E. Conroy, E. & Kelly-Quinn, M. (2017) 'Measurement differences between turbidity instruments, and their implications for suspended sediment concentration and load calculations: A sensor inter-comparison study'. Journal of Environmental Management, 199 (99):108. | |
| Conroy, E, Turner, J.N., Rymszewicz, A, Bruen, M, O'Sullivan, J, Kelly-Quinn, M (2016) 'An Evaluation of Visual and Measurement-Based Methods for Estimating Deposited Fine Sediment'. International Journal of Sediment Research, 31 :368-375. | |
| Ryan, D. & Kelly-Quinn, M. (2016) 'Riparian vegetation management for water temperature regulation: implications for the production of macroinvertebrate prey of salmonids'. Fisheries Management and Ecology, 23 (6):519-530. | |
| O'Callagha, P. & Kelly-Quinn, M. (2016) 'Distribution and structure of lotic macroinvertebrate communities and the influence of environmental factors in a tropical cloud forest, Cusuco National Park, Hondura'. Journal of Limnology . | |
| Hannigan, E., Feeley, H. & Kelly-Quinn, M. (2016) 'Should rare river types be given special consideration under the WFD? Biology and Environment'. Proceedings of the Royal Irish Academy. Section B: Biological, geological, and chemical science, 116B (3):167-177. |
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| Aschale,M., Sileshi,Y., Kelly-Quinn, M. & Hailu, D. (2016) 'Pollution Assessment of Toxic and Potentially Toxic Elements in Agricultural Soils of the City Addis Ababa, Ethiopia'.Bulletin of Environmental Contamination and Toxicology . | |
| Aschale,M., Sileshi,Y., Kelly-Quinn, M.& Hailu, D. (2016) 'Evaluation of potentially toxic element pollution in the benthic sediments of the water bodies of the city of Addis Ababa, Ethiopia'. Journal of Environmental Chemical Engineering, 4 :4173-4183. | |
| Juggins S, Kelly M, Allott T, Kelly-Quinn M, Monteith D (2016) 'A Water Framework Directive-compatible metric for assessing acidification in UK and Irish rivers using diatoms'. Science of the Total Environment, 568 :671-678. | |
| Conroy E., Turner J.N., Rymszewicz A., O'Sullivan J.J., Bruen M., Lawler D., Lally H., M. Kelly-Quinn M. (2016) 'Evaluating the relationship between biotic and sediment metrics using mesocosms and field studies'. Science of the Total Environment, 568 :1092-1101. | |
| Assoc Professor Paul McCabe | |
| Joanna Kacprzyk, Niall P. Brogan, Cara T. Daly, Siamsa M. Doyle, Mark Diamond, Elizabeth M. Molony, Paul F. McCabe (2017) 'The retraction of the protoplast during PCD is an active, and interruptible, calcium-flux driven process'. Plant Science, 260 :50-59. |
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| Dr Andrew McCullagh | |
| McCullagh, A; Black, K; Nieuwenhuis, M (2017) 'Evaluation of tree and stand-level growth models using national forest inventory data'. European Journal of Forest Research, 136 (2):251-28. | |
| Dr Rainer Melzer | |
| Di Stilio, VS; Melzer, R; Hall, JC (2017) 'A broader view for plant evodevo: novel approaches for diverse model systems'. Frontiers in Plant Science, 8 . |
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| Theißen, G., Melzer, R., Rümpler, F. (2016) 'MADS-domain transcription factors and the floral quartet model of flower development: linking plant development and evolution'.Development, 143 (18):3259-3271. |
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| Professor Christoph Mueller | |
| Brenzinger, K., K. Kujala, M. A. Horn, G. Moser, C. Guillet, C. Kammann, C. Müller, and G. Braker (2017) 'Soil conditions rather than long-term exposure to elevated CO2 affect soil microbial communities associated with N-cycling'. Frontiers in Microbiology . | |
| Wang, J., J. Zhang, C. Müller, and Z. Cai (2017) 'Temperature sensitivity of gross N transformation rates in an alpine meadow on the Qinghai-Tibetan Plateau'. Journal of Soils and Sediments, 17 :423-431. | |
| Wang, J., J. Zhang, C. Müller, and Z. Cai (2017) 'Nitrification is the key process determining N use efficiency in paddy soils'. Journal of Soil Science and Plant Nutrition,10.1002/jpln.201700130 . | |
| Liu, S., X. Zhang, J. Zhao, J. Zhang, C. Müller, and Z. Cai (2017) 'Effects of long-term no tillage treatment on gross soil N transformations in black soil in Northeast China'.Geoderma, 301 :42-46. | |
| Kellner, J., S. Multsch, P. Kraft, T. Houska, C. Müller, and L. Breuer (2017) 'A coupled hydrological-plant growth model for simulating the effect of elevated CO2 on a temperate grassland'. Agricultural and Forest Meteorology, 246 :42-50. | |
| Wang, J., Y. Cheng, Y. J. Jiang, B. Sun, J. B. Fan, J. B. Zhang, C. Müller, and Z. C. Cai (2017) 'Effects of 14 years of repeated pig manure applications on gross nitrogen transformations in an upland soil'. Plant and Soil, 415 :161-173. | |
| Kammann, C., S. Ratering, C.-M. Görres, C. Guillet, and C. Müller (2017) 'Stimulation of methane oxidation by CH4-emitting rose chafer larvae in well-aerated grassland soil'.Biology and Fertility of Soils, 53 :491-499. | |
| Houska, T., P. Kraft, R. Liebermann, S. Klatt, D. Kraus, E. Haas, I. Santabarbara, R. Kiese, K. Butterbach-Bahl, C. Müller, and L. Breuer (2017) 'Rejecting hydro-biogeochemical model structures by multi-criteria evaluation'. Environmental Modelling and Software, 93 :1-12. | |
| Senghor, A., R. M. N. Dioh, C. Müller, and I. Youm (2017) 'Cereal crops for biogas production: a review of possible impact of elevated CO2'. Renewable and Sustainable Energy Reviews, 71 :548-554. | |
| Jahangir, M. N. R., O. Fenton, C. Müller, R. Harrington, P. Johnston, and K. G. Richards (2017) 'In situ denitrification and DNRA rates in groundwater beneath an integrated constructed wetland'. Water Research, 111 :254-264. | |
| Harty, M. A., K. L. McGeough, R. Carolan, C. Müller, R. J. Laughlin, G. J. Lanigan, K. G. Richards, and C. J. Watson (2017) 'Effects of urea stabilisers on gross nitrogen transformations in grassland soil'. Soil Biology and Biochemistry, 109 :23-34. | |
| Haider, G., D. Steffens, C. Müller, and C. I. Kammann (2017) 'Biochar reduced nitrate leaching and improved soil moisture content without yield improvements in a four-year field study'. Agriculture, Ecosystems & Enviroment, 237 :80-94. | |
| Schimmelpfennig, S., C. Kammann, J. Mumme, S. Marhan, C. Bamminger, G. Moser, and C. Müller (2017) 'Degradation of Miscanthus X giganteus biochar, hydrochar and feedstock under the influence of disturbance events'. Applied Soil Ecology, 113 :135-150. | |
| Andresen, L. C., N. Yuan, R. Seibert, G. Moser, C. I. Kammann, J. Luterbacher, M. Erbs, and C. Müller (2017) 'Biomass responses in a temperate European grassland through 17 years of elevated CO2'. Global Change Biology, 23 . | |
| Obermeier, W., L. Lehnert, C. Kammann, C. Müller, L. Grünhage, J. Luterbacher, M. Erbs, G. Moser, R. Seibert, N. Yuan, and J. Bendix (2017) 'Reduced CO2 fertilization effect in temperate C3 grasslands under more extreme weather conditions'. Nature Climate Change, 7 :137-141. | |
| Aydogan, E. L., H.-J. Busse, G. Moser, C. Müller, P. Kämpfer, and S. P. Glaeser (2017) 'Proposal of Mucilaginibacter galii sp. nov. isolated from the phyllosphere of Galium album'. International Journal of Systematic and Evolutionary Microbiology, 67 :1318-1326. | |
| Aydogan, E. L., H.-J. Busse, G. Moser, C. Müller, P. Kämpfer, and S. P. Glaeser (2016) 'Proposal of Mucilaginibacter phyllosphaerae sp. nov. isolated from the phyllosphere of Galium album'. International Journal of Systematic and Evolutionary Microbiology, 66 :4138-4147. | |
| Wang, J., L. Wang, X. Feng, H. Hu, Z. Cai, C. Müller, and J. Zhang (2016) 'Soil N transformations and its controlling factors in temperate grasslands in China: A study from 15N tracing experiment to literature synthesis'. Journal of Geophysical Research, 121 :2949-2959. | |
| Khalil, M. I., M. Abdalla, G. Lanigan, B. Osborne, and C. Müller (2016) 'Evaluation of parametric limitations in simulating greenhouse gas fluxes from Irish arable soils using three process-based models'. Agricultural Sciences, 7 :503-520. | |
| Dr Fiachra O'Loughlin | |
| Yamazaki, Dai and Ikeshima, Daiki and Tawatari, Ryunosuke and Yamaguchi, Tomohiro and O'Loughlin, Fiachra and Neal, Jeffery C. and Sampson, Christopher C. and Kanae, Shinjiro and Bates, Paul D. (2017) 'A high-accuracy map of global terrain elevations'.Geophysical Research Letters, 44 (11):5844-5853. |
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| O'Loughlin, FE and Paiva, RCD and Durand, M and Alsdorf, DE and Bates, PD (2016) 'A multi-sensor approach towards a global vegetation corrected SRTM DEM product'. Remote Sensing of Environment, 182 :49-59. | |
| Dr Emmanuel Reynaud | |
| Laissue PP, Alghamdi RA, Tomancak P, Reynaud EG, Shroff H (2017) 'Assessing phototoxicity in live fluorescence imaging'. Nature Methods, 14 (7):657-661. | |
| Mier P, Pérez-Pulido AJ, Reynaud EG, Andrade-Navarro MA. (2017) 'Reading the Evolution of Compartmentalization in the Ribosome Assembly Toolbox: The YRG Protein Family'.PLoS ONE . | |
| Dr Anna Rymszewicz | |
| Ballabio, C., Borrelli, P., Spinoni, J., Meusburger, K., Michaelides, S., Beguería, S., Klik, A., Petan, S., Janeček, M., Olsen, P., Aalto, J., Lakatos, M., Rymszewicz, A., Dumitrescu, A., Tadić, M. P., Diodato, N., Kostalova, J., Rousseva, S., Banasik, K., Alewell, C. & Panagos, P. (2017) 'Mapping monthly rainfall erosivity in Europe'. Science of the Total Environment,579 :1298-1315. | |
| Rymszewicz, A., O'Sullivan, J. J., Bruen, M., Turner, J. N., Lawler, D. M., Conroy, E. & Kelly-Quinn, M. (2017) 'Measurement differences between turbidity instruments, and their implications for suspended sediment concentration and load calculations: A sensor inter-comparison study'. Journal of Environmental Management, 199 :99-108. | |
| Conroy, E., Turner, J. N., Rymszewicz, A., Bruen, M., O׳Sullivan, J. & Kelly-Quinn, M (2016) 'An evaluation of visual and measurement-based methods for estimating deposited fine sediment'. International Journal of Sediment Research, 31 :368-375. | |
| Conroy, E., Turner, J. N., Rymszewicz, A., Bruen, M., O'Sullivan, J. J., Lawler, D. M., Lally, H. & Kelly-Quinn, M. (2016) 'Evaluating the relationship between biotic and sediment metrics using mesocosms and field studies'. Science of the Total Environment,(568):1092-1101. | |
| Professor Jeremy Simpson | |
| Long M, Simpson JC (2017) 'Rho GTPases operating at the Golgi complex: Implications for membrane traffic and cancer biology'. Tissue and Cell, 49 :163-169. | |
| Kranjc T, Dempsey E, Cagney G, Nakamura N, Shields DC, Simpson JC. (2017) 'Functional characterisation of the YIPF protein family in mammalian cells'. Histochemistry and Cell Biology, 147 :439-451. | |
| Caruso ME, Jenna S, Baillie DL, Bossé R, Simpson JC, Chevet E, Taouji S. (2017) 'Systematic functional analysis of the Ras GTPase family unveils a conserved network required for anterograde protein trafficking'. Proteomics, 17 . | |
| Bexiga MG, Simpson JC (2016) 'Genome-Wide siRNA Screening Using Forward Transfection: Identification of Modulators of Membrane Trafficking in Mammalian Cells'.Methods in molecular biology (Clifton, N.J.), 1470 :39-48. | |
| Dr Gavin Stewart | |
| Zhong, C., Kang, J., Stewart, G., Zhou, J., Huang, X., Mi, J., Liu, J., Yang, C., Zhang, Y., and Long, R. (2017) 'Comparison of aquaporin-1 expression between yak (Bos grunniens) and indigenous cattle (Bos taurus) in Qinghai-Tibetan Plateau'. Animal Production Science,57 (8):1618-1623. | |
| McGrane, A. and Stewart, G. (2016) 'Hyperosmolality regulates UT-A6 urea transporter expression in the Caco-2 cell line'. Physiological reports, 4 (17):e12984. | |
| Al-mousawi, H., Ryan, E., McGrane, A., Riveros-Beltran, S., Walpole, C., Dempsey, E., Courtney, D., Fearon, N., Winter, D., Baird, A. and Stewart G. (2016) 'Differential protein abundance of a basolateral MCT1 transporter in the human gastrointestinal tract'. Cell Biology International, 40 (12):1303-1312. | |
| Dr Jonathan Yearsley | |
| Prat-Guitart, N; Belcher, CB; Thompson, DK; Burns, P; Yearsley, JM (2017) 'Fine-scale distribution of moisture in the surface of a degraded blanket bog and its effects on the potential spread of smouldering fire'. Ecohydrology . |
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| Nally, JE; Arent, Z; Bayles, DO; Gilmore, C; Regan, S; McDevitt, A; Yearsley, J; Fanning, S; McMahon, BJ; (2016) 'Emerging infectious disease implications of invasive mammalian species: the greater white-toothed shrew (Crocidura russula) is associated with a novel serovar of pathogenic Leptospira in Ireland'. PLoS Neglected Tropical Diseases, 10 (12):e0005174. |
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| Eldon, B; Riquet, F; Yearsley, J; Jollivet, D; Broquet, T (2016) 'Current hypotheses to explain genetic chaos under the sea'. Current Zoology, 62 (6):551-556. |
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| Dr Charilaos Yiotis | |
| Amanda S. Porter, Charilaos Yiotis, Isabel P. Montañez, Jennifer C. McELwain (2017) 'Evolutionary differences in Δ13C detected between spore and seed bearing plants following exposure to a range of atmospheric O2:CO2 ratios; implications for paleoatmosphere reconstruction'. Geochimica et Cosmochimica Acta . |
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| Yiotis C., Evans-FitzGerald C. and McElwain J.C. (2017) 'Differences in the photosynthetic plasticity of ferns and Ginkgo grown in experimentally controlled low [O2]: high [CO2] atmospheres may explain their contrasting ecological fate across the Triassic-Jurassic mass extinction boundary'. Annals of Botany . | |
| McElwain J.C., Montanez I., White J.D., Wilson J. and Yiotis C. 2017 (2017) 'Reply to Comment on Was atmospheric CO2 capped at 1000 ppm over the past 300 million years? [Palaeogeography, Palaeoclimatology, Palaeoecology 441 (2016) 653¿658]'.Palaeogeography, Palaeoclimatology, Palaeoecology . | |
| Evans-FitzGerald, C; Porter, AS; Yiotis, C; Elliot-Kingston, C; McElwain, JC (2016) 'Co-ordination in morphological leaf traits of early diverging angiosperms is maintained following exposure to experimental palaeo-atmospheric conditions of sub-ambient O2 and elevated CO2'. Frontiers in Plant Science, 7 (1368):1-11. |
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Conference Publications
| Dr Emmanuel Reynaud | |
| Keaveney S.,Colin Keogh C., Gutierrez-Heredia L., and E. G. Reynaud (2016) Applications for advanced 3D imaging, modelling, and printing techniques for the biological sciencesVSMM 2016, | |
| Dr Hugh Feeley | |
| Feeley, HB; Bruen, M; Bullock, C; Christie, M; Kelly, F; Remoundou, K; Siwicka, E; Kelly-Quinn, M. (2016) Ecosystem Services in Freshwaters: ESManage Literature Review Report 187. Environmental Protection Agency, Johnstown Castle, Co Wexford. | |
| Assoc Professor Mary Kelly-Quinn | |
| Hannigan, M. & Kelly-Quinn, M. (2017) Characterising the Biological Communities of Rare River Types. Environmental Protection Agency, Ireland. |
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| Feeley, H.B., Bruen, M., Bullock, C., Christie, M., Kelly, F. & Kelly-Quinn, M. (2017) Irish Freshwater Resources and Assessment of Ecosystem Services Provision. Environmental Protection Agency, Dublin. | |
| Feeley, H. B., Bruen, M., Bullock, C., Christie, M., Kelly, F., Kelly-Quinn, M. (2017) ESManage Project: Irish Freshwater Resources and Assessment of Ecosystem Services Provision. Environmental Protection Agency, Ireland. |
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| Feeley, H.B., Bruen, M., Bullock, C., Christie, M., Kelly, F., Remoundou, K., Siwicka, E. and Kelly-Quinn, M. (2017) ESManage Project: Freshwaters Ecosystem Services. An Introduction for stakeholders. Environmental Protection Agency, Ireland. |
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| Feeley, H.B., Bruen, M., Bullock, C., Christie, M., Kelly, F., Remoundou, K., Siwicka, E. and Kelly-Quinn, M. (2016) ESManage Literature Review: Ecosystem Services in Freshwaters. Environmental Protection Agency, Ireland. |
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| Dr Anna Rymszewicz | |
| Lawler, D., Rymszewicz, A., Conroy, E., O¿Sullivan, J., Bruen, M., Turner, J. & Kelly-Quinn, M. (2017) SILTFLUX Literature Review (2010-W-LS-4). EPA Research Report. Environmental Protection Agency, Wexford, Ireland. | |
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Other Publications
| Dr Wieland Fricke | |
| Fricke (2017) Xylem: Differentiation, Water Transport and Ecology. Chichester, UK: Encyclopedia Entry. | |
| Fricke (2017) Turgor Pressure. Chichester, UK: Encyclopedia Entry. | |
| Dr Emmanuel Reynaud | |
| JM Perkel (2017) Pocket laboratories. Interview. | |
| A. Colonna-Cesari (2017) Leopold et Rudolf Blaschka, Maitres Verriers, Pere et Fils. Paris: Interview. | |