Below is the list of research publications for the UCD School of Chemical and Bioprocess Engineering in the academic year 2017/18
| Professor Niall Barron | |
Kellner K; Solanki A; Amann T; Lao N; Barron N (2018) 'Targeting miRNAs with CRISPR/Cas9 to improve recombinant protein production of CHO cells' In: Methods in Molecular Biology. , pp.221-235  |
|
| Mr Hisham Abourayana | |
| Abourayana H; Dobbyn P; Dowling D (2018) 'Enhancing the mechanical performance of additive manufactured polymer components using atmospheric plasma pre-treatments'. Plasma Processes and Polymers 15 (3). |
|
| Abourayana, H.M.; Dobbyn, P.; Dowling D.P. (2017) 'Investigation of the Performance of Barrel Atmospheric Plasma Source for the Deposition of Fluorocarbon Coating onto Silicone Polymer Particles'. Advances in Materials Science and Engineering 1 (1) :1-5. |
|
| Professor Niall Barron | |
| Griffith A; Kelly PS; Vencken S; Lao NT; Greene CM; Clynes M; Barron N (2018) 'miR-CATCH Identifies Biologically Active miRNA Regulators of the Pro-Survival Gene XIAP, in Chinese Hamster Ovary Cells'. Biotechnology Journal 13 (3). |
|
| O'Sullivan F; Keenan J; Aherne S; O'Neill F; Clarke C; Henry M; Meleady P; Breen L; Barron N; Clynes M (2017) 'Parallel mRNA, proteomics and miRNA expression analysis in cell line models of the intestine'. World Journal of Gastroenterology 23 (41) :7369-7386. |
|
| Costello A; Lao NT; Gallagher C; Capella Roca B; Julius LAN; Suda S; Ducrée J; King D; Wagner R; Barron N (2018) 'Leaky Expression of the TET-On System Hinders Control of Endogenous miRNA Abundance'. Biotechnology Journal . |
|
| Dr Samir Belhout | |
| Deeney C; Wang S; Belhout SA; Gowen A; Rodriguez BJ; Redmond G; Quinn SJ (2018) 'Templated microwave synthesis of luminescent carbon nanofibers'. RSC Advances 8 (23) :12907-12917. |
|
| Dr Jonathan Bones | |
| Farell A; Carillo S; Bones J (2018) 'Enhancing analysis'. EBR - European Biopharmaceutical Review 2018 (July) :26-28. | |
| Moore RE; Broster K; Cook K; D'Silva K; Niederkofler E; Bailey AO; Bones J; Dong MW (2018) 'Antibody–drug conjugates: Perspectives and characterization'. LC-GC North America 36 (6) :362-374. | |
| Moore RE; Broster K; Cook K; D’Silva K; Niederkofler E; Bailey AO; Bones J; Dong MW (2018) 'Antibody-drug conjugates: Perspectives and characterization'. LC-GC Europe 31 (6) :332-343. | |
| Albrecht S; Kaisermayer C; Gallagher C; Farrell A; Lindeberg A; Bones J (2018) 'Proteomics in biomanufacturing control: Protein dynamics of CHO-K1 cells and conditioned media during apoptosis and necrosis'. Biotechnology and Bioengineering 115 (6) :1509-1520. |
|
| Floris P; Curtin S; Kaisermayer C; Lindeberg A; Bones J (2018) 'Development of a versatile high-temperature short-time (HTST) pasteurization device for small-scale processing of cell culture medium formulations'. Applied Microbiology and Biotechnology 102 (13) :5495-5504. |
|
| Füssl F; Cook K; Scheffler K; Farrell A; Mittermayr S; Bones J (2018) 'Charge Variant Analysis of Monoclonal Antibodies Using Direct Coupled pH Gradient Cation Exchange Chromatography to High-Resolution Native Mass Spectrometry'. Analytical Chemistry 90 (7) :4669-4676. |
|
| Albrecht S; Kaisermayer C; Reinhart D; Ambrose M; Kunert R; Lindeberg A; Bones J (2018) 'Multiple reaction monitoring targeted LC-MS analysis of potential cell death marker proteins for increased bioprocess control'. Analytical and Bioanalytical Chemistry 410 (13) :3197-3207. |
|
| Tassi M; De Vos J; Chatterjee S; Sobott F; Bones J; Eeltink S (2018) 'Advances in native high-performance liquid chromatography and intact mass spectrometry for the characterization of biopharmaceutical products'. Journal of Separation Science 41 (1) :125-144. |
|
| McGillicuddy N; Floris P; Albrecht S; Bones J (2018) 'Examining the sources of variability in cell culture media used for biopharmaceutical production'. Biotechnology Letters 40 (1) :5-21. |
|
| Floris P; McGillicuddy N; Albrecht S; Morrissey B; Kaisermayer C; Lindeberg A; Bones J (2017) 'Untargeted LC-MS/MS Profiling of Cell Culture Media Formulations for Evaluation of High Temperature Short Time Treatment Effects'. Analytical Chemistry 89 (18) :9953-9960. |
|
| O'Mara P; Farrell A; Bones J; Twomey K (2018) 'Staying alive! Sensors used for monitoring cell health in bioreactors'. Talanta 176 :130-139. |
|
| Dorival-García N; Bones J (2017) 'Evaluation of solvent systems for optimized extractables studies of single use bioprocessing solutions'. Journal of Chromatography A 1513 :69-77. |
|
| Farrell A; Carillo S; Scheffler K; Cook K; Bones J (2018) 'Monoclonal antibody sequence assessment using a hybrid quadrupole-Orbitrap mass spectrometer'. Analytical Methods 10 (25) :3100-3109. |
|
| Dorival-García N; Carillo S; Ta C; Roberts D; Comstock K; Lofthouse S; Ciceri E; D'Silva K; Kierans G; Kaisermayer C (2018) 'Large-Scale Assessment of Extractables and Leachables in Single-Use Bags for Biomanufacturing'. Analytical Chemistry 90 (15) :9006-9015. |
|
| Professor Eoin Casey | |
| McDonnell CK; Allen P; Duane G; Morin C; Casey E; Lyng JG (2018) 'One-directional modelling to assess the mechanistic actions of power ultrasound on NaCl diffusion in pork'. Ultrasonics Sonochemistry 40 :206-212. |
|
| Hussain S; Quinn L; Li J; Casey E; Murphy CD (2017) 'Simultaneous removal of malachite green and hexavalent chromium by Cunninghamella elegans biofilm in a semi-continuous system'. International Biodeterioration and Biodegradation 125 :142-149. |
|
| Allen A; Habimana O; Casey E (2018) 'The effects of extrinsic factors on the structural and mechanical properties of Pseudomonas fluorescens biofilms: A combined study of nutrient concentrations and shear conditions'. Colloids and Surfaces B: Biointerfaces 165 :127-134. |
|
| Habimana O; Casey E (2018) 'Biofilm recruitment under nanofiltration conditions: the influence of resident biofilm structural parameters on planktonic cell invasion'. Microbial Biotechnology 11 (1) :264-267. |
|
| Çelik A; Casey E; Hasar H (2018) 'Degradation of oxytetracycline under autotrophic nitrifying conditions in a membrane aerated biofilm reactor and community fingerprinting'. Journal of Hazardous Materials 356 :26-33. |
|
| Dr Philip Donnellan | |
| Simon M; Donnellan P; Glennon B; Jones RC (2018) 'Resolution via Diastereomeric Salt Crystallization of Ibuprofen Lysine: Ternary Phase Diagram Studies'. Chemical Engineering and Technology 41 (5) :921-927. |
|
| Gao Y; Glennon B; Kamaraju VK; Hou G; Donnellan P (2018) 'Dissolution Kinetics of a BCS Class II Active Pharmaceutical Ingredient'. Organic Process Research and Development 22 (3) :328-336. |
|
| O'Mahony RM; Lynch D; Hayes HLD; Ní Thuama E; Donnellan P; Jones RC; Glennon B; Collins SG; Maguire AR (2017) 'Exploiting the Continuous in situ Generation of Mesyl Azide for Use in a Telescoped Process'. European Journal of Organic Chemistry 2017 (44) :6533-6539. |
|
| Pascual GK; Donnellan P; Glennon B; Kamaraju VK; Jones RC (2017) 'Experimental and Modeling Studies on the Solubility of 2-Chloro-N-(4-methylphenyl)propanamide (S1) in Binary Ethyl Acetate + Hexane, Toluene + Hexane, Acetone + Hexane, and Butanone + Hexane Solvent Mixtures Using Polythermal Method'. Journal of Chemical and Engineering Data 62 (10) :3193-3205. |
|
| Professor Niall English | |
| Martinez-Gonzalez JA; English NJ; Gowen AA (2017) 'Understanding the interface between silicon-based materials and water: Molecular-dynamics exploration of infrared spectra'. AIP Advances 7 (11). |
|
| Ghaani MR; English NJ (2018) 'Molecular Dynamics Study of Propane Hydrate Dissociation: Nonequilibrium Analysis in Externally Applied Electric Fields'. Journal of Physical Chemistry C 122 (13) :7504-7515. |
|
| Nandi PK; Burnham CJ; English NJ (2018) 'Electro-nucleation of water nano-droplets in No Man's Land to fault-free ice I<inf>c</inf>'. Physical Chemistry Chemical Physics 20 (12) :8042-8053. |
|
| Ghaani MR; English NJ (2018) 'Molecular-dynamics study of propane-hydrate dissociation: Fluctuation-dissipation and non-equilibrium analysis'. Journal of Chemical Physics 148 (11). |
|
| Melgar D; Lauricella M; O'Brien GS; English NJ (2018) 'Elastic Characterization of S- and P-Wave Velocities in Marinelike Silica: The Role of Nonequilibrium Molecular Dynamics'. Journal of Physical Chemistry C 122 (5) :3006-3013. |
|
| Nandi PK; Burnham CJ; English NJ (2018) 'Electro-suppression of water nano-droplets' solidification in no man's land: Electromagnetic fields' entropic trapping of supercooled water'. Journal of Chemical Physics 148 (4). |
|
| Lyons C; Dev P; Maji P; Rathi N; Surolia PK; Byrne O; Xiao X; English NJ; Magner E; MacElroy JMD (2018) 'Silicon-bridged triphenylamine-based organic dyes for efficient dye-sensitised solar cells'. Solar Energy 160 :64-75. |
|
| Burnham CJ; Futera Z; English NJ (2018) 'Study of hydrogen-molecule guests in type II clathrate hydrates using a force-matched potential model parameterised from ab initio molecular dynamics'. Journal of Chemical Physics 148 (10). |
|
| Byrne A; English NJ (2018) 'A systematic study via ab-initio MD of the effect solvation by room temperature ionic liquid has on the structure of a chromophore-titania interface'. Computational Materials Science 141 :193-206. |
|
| Waldron CJ; English NJ (2018) 'System-density fluctuations and electro-dissociation of methane clathrate hydrates in externally-applied static electric fields'. Journal of Chemical Thermodynamics 117 :68-80. |
|
| Tse JS; English NJ; Yin K; Iitaka T (2018) 'Thermal Conductivity of Solids from First-Principles Molecular Dynamics Calculations'. Journal of Physical Chemistry C 122 (20) :10682-10690. |
|
| Futera Z; English NJ (2018) 'Pressure dependence of structural properties of ice VII: An ab initio molecular-dynamics study'. Journal of Chemical Physics 148 (20). |
|
| López Martí JM; English NJ; Del Pópolo MG (2018) 'Elucidating mysteries of phase-segregated membranes: Mobile-lipid recruitment facilitates pores' passage to the fluid phase'. Physical Chemistry Chemical Physics 20 (28) :19234-19239. |
|
| Dr Mohammad Reza Ghaani | |
| Ghaani MR; English NJ (2018) 'Molecular Dynamics Study of Propane Hydrate Dissociation: Nonequilibrium Analysis in Externally Applied Electric Fields'. Journal of Physical Chemistry C 122 (13) :7504-7515. |
|
| Ghaani MR; English NJ (2018) 'Molecular-dynamics study of propane-hydrate dissociation: Fluctuation-dissipation and non-equilibrium analysis'. Journal of Chemical Physics 148 (11). |
|
| Aghamolaei R; Ghaani MR; Tahsildoost M; Zandi M (2018) 'A comprehensive energy-oriented approach for optimization of solar potential in urban contexts: an application study for residential districts'. Advances in Building Energy Research :1-16. |
|
| Professor Brian Glennon | |
| Simon M; Donnellan P; Glennon B; Jones RC (2018) 'Resolution via Diastereomeric Salt Crystallization of Ibuprofen Lysine: Ternary Phase Diagram Studies'. Chemical Engineering and Technology 41 (5) :921-927. |
|
| Gao Y; Glennon B; Kamaraju VK; Hou G; Donnellan P (2018) 'Dissolution Kinetics of a BCS Class II Active Pharmaceutical Ingredient'. Organic Process Research and Development 22 (3) :328-336. |
|
| O'Mahony RM; Lynch D; Hayes HLD; Ní Thuama E; Donnellan P; Jones RC; Glennon B; Collins SG; Maguire AR (2017) 'Exploiting the Continuous in situ Generation of Mesyl Azide for Use in a Telescoped Process'. European Journal of Organic Chemistry 2017 (44) :6533-6539. |
|
| Pascual GK; Donnellan P; Glennon B; Kamaraju VK; Jones RC (2017) 'Experimental and Modeling Studies on the Solubility of 2-Chloro-N-(4-methylphenyl)propanamide (S1) in Binary Ethyl Acetate + Hexane, Toluene + Hexane, Acetone + Hexane, and Butanone + Hexane Solvent Mixtures Using Polythermal Method'. Journal of Chemical and Engineering Data 62 (10) :3193-3205. |
|
| Worku ZA; Kumar D; Gomes JV; He Y; Glennon B; Ramisetty KA; Rasmuson ÅC; O'Connell P; Gallagher KH; Woods T (2017) 'Modelling and understanding powder flow properties and compactability of selected active pharmaceutical ingredients, excipients and physical mixtures from critical material properties'. International Journal of Pharmaceutics 531 (1) :191-204. |
|
| Kumar D; Worku ZA; Gao Y; Kamaraju VK; Glennon B; Babu RP; Healy AM (2018) 'Comparison of wet milling and dry milling routes for ibuprofen pharmaceutical crystals and their impact on pharmaceutical and biopharmaceutical properties'. Powder Technology 330 :228-238. |
|
| Assoc Professor Susan McDonnell | |
| Borah N; Gunawardana S; Torres H; McDonnell S; Van Slambrouck S (2017) '5,6,7,3',4',5'-Hexamethoxyflavone inhibits growth of triplenegative breast cancer cells via suppression of MAPK and Akt signaling pathways and arresting cell cycle'. International Journal of Oncology 51 (6) :1685-1693. |
|
| Dr Dolores Melgar Freire | |
| Melgar D; Lauricella M; O'Brien GS; English NJ (2018) 'Elastic Characterization of S- and P-Wave Velocities in Marinelike Silica: The Role of Nonequilibrium Molecular Dynamics'. Journal of Physical Chemistry C 122 (5) :3006-3013. |
|
| Dr Laura Quinn | |
| Rodil A; Bosisio S; Ayoup MS; Quinn L; Cordes DB; Slawin AMZ; Murphy CD; Michel J; O'Hagan D (2018) 'Metabolism and hydrophilicity of the polarised 'Janus face' all-: Cis tetrafluorocyclohexyl ring, a candidate motif for drug discovery'. Chemical Science 9 (11) :3023-3028. |
|
| Hussain S; Quinn L; Li J; Casey E; Murphy CD (2017) 'Simultaneous removal of malachite green and hexavalent chromium by Cunninghamella elegans biofilm in a semi-continuous system'. International Biodeterioration and Biodegradation 125 :142-149. |
|
| Dr Pralok Samanta | |
| Samanta PK; Pati SK (2017) 'Understanding the unfolding mechanism of human telomeric G-quadruplex using steered molecular dynamics simulation'. Indian Journal of Chemistry - Section A Inorganic, Physical, Theoretical and Analytical Chemistry 56A (9) :907-912. | |
| Navamani K; Samanta PK; Pati SK (2018) 'Theoretical modeling of charge transport in triphenylamine-benzimidazole based organic solids for their application as host-materials in phosphorescent OLEDs'. RSC Advances 8 (52) :30021-30039. |
|
| Dr Charlie Stallard | |
| Ekoi EJ; Stallard C; Reid I; Dowling DP (2017) 'Tailoring oxide-layer formation on titanium substrates using microwave plasma treatments'. Surface and Coatings Technology 325 :299-307. |
|
| Zhang N; Zhang H; Stallard C; Fang F; Gilchrist MD (2018) 'Replication integrity of micro features using variotherm and vacuum assisted microinjection moulding'. CIRP Journal of Manufacturing Science and Technology . |
|
| Professor Ravindranathan Thampi | |
| Lyons C; Dev P; Maji P; Rathi N; Surolia PK; Byrne O; Xiao X; English NJ; Magner E; MacElroy JMD (2018) 'Silicon-bridged triphenylamine-based organic dyes for efficient dye-sensitised solar cells'. Solar Energy 160 :64-75. |
|
| Natarajan TS; Thampi KR; Tayade RJ (2018) 'Visible light driven redox-mediator-free dual semiconductor photocatalytic systems for pollutant degradation and the ambiguity in applying Z-scheme concept'. Applied Catalysis B: Environmental 227 :296-311. |
|
Back to Top
Conference Publications
| Professor Niall English | |
| J.A. Martinez-Gonzalez, P.K. Nandi, N.J. English and A.A. Gowen (2017) Infrared Spectra at the interface between water and protein: A molecular dynamics study In: 5th Annual CCP-BioSim Conference: Frontiers of Biomolecular Simulation | |
| Professor Ravindranathan Thampi | |
| Newell A; Thampi KR (2017) Novel amorphous aluminum hydroxide catalysts for aluminum–water reactions to produce H<inf>2</inf>on demand In: International Journal of Hydrogen Energy |
|
| Professor Eoin Casey | |
| Casey E (2018) Chemical Engineering Education and Industrial Develeopments. : Engineers Ireland Yearbook 2018 |
|
| Dr Eoin Syron | |
| Ekthari, M., Syron E., May 2018 Ireland’s future natural gas supply: How well connected is the island?, Engineers Journal, Engineers Ireland |
|
| Syron, E, August 2018. Use of power-to-gas for the reduction of renewable energy curtailment, Gas for Energy, Vulkan Verlag, Germany |
|