Biology & Environmental Science

Book

Assoc Professor Mary Kelly-Quinn
Kelly-Quinn, M., & Reynolds, J. D. (2020). Ireland's Rivers.

Chapter

Dr Nadia Al-Tamimi
Al-Tamimi, N., Oakey, H., Tester, M., & Negrão, S. (2021). Assessing Rice Salinity Tolerance: From Phenomics to Association Mapping. In Methods in Molecular Biology (Vol. 2238, pp. 339-375).
Dr Jan-Robert Baars
Baars, J. -R., Minchin, D., Caffrey, J. M., & Lucey, F. (2020). Aquatic Invasive Alien Species Past, Present and Future Threats to Irish Rivers. In M. Kelly-Quinn, & J. Reynolds (Eds.), Ireland's Rivers (pp. 303-327). Dublin: UCD Press.
Feeley, H. B., Giller, P. S., Baars, J. -R., & Kelly-Quinn, M. (2020). Benthic Macroinvertebrates Key Components of a Healthy River. In M. Kelly-Quinn, & J. Reynolds (Eds.), Ireland's Rivers (pp. 95-139). Dublin: UCD Press.
Dr Harriet Benbow
Hehir, J. G., Benbow, H. R., Singh Rathore, D., & Mullins, E. (2020). Improvements in Genomic Technologies: Applications to Crop Research. In Comprehensive Foodomics (pp. 113-126). Elsevier: Elsevier.
Dr Rory Johnson
Carbonell Sala, S., Uszczynska-Ratajczak, B., Lagarde, J., Johnson, R., & Guigó, R. (2021). Annotation of Full-Length Long Noncoding RNAs with Capture Long-Read Sequencing (CLS). In Methods in Molecular Biology (Vol. 2254, pp. 133-159).
Assoc Professor Mary Kelly-Quinn
Feeley, H. B., Giller, P. S., Baars, J. -R., & Kelly-Quinn, M. (2020). Benthic Macroinvertebrates Key Components of a Healthy River. In M. Kelly-Quinn, & J. Reynolds (Eds.), Ireland's Rivers (pp. 95-139). Dublin: UCD Press.
Dr Sonia Negrao
Al-Tamimi, N., Oakey, H., Tester, M., & Negrão, S. (2021). Assessing Rice Salinity Tolerance: From Phenomics to Association Mapping. In Methods in Molecular Biology (Vol. 2238, pp. 339-375).

Conference Paper

Dr Jan-Robert Baars
Baars, J. -R., Kassari, N., & Caplice, M. B. (2021). The influence of sampling effort on assessing small pond biodiversity. In SEFS. Dublin.
Baars, J. -R., & Normanly, R. (2021). Motorway attenuation ponds as new habitats for mobile aquatic insects in Ireland. In SEFS. Dublin.
Dr Florence Renou-Wilson
Renou-Wilson, F. (2020). The peatland research landscape - report from Ireland. In IUCN UK Peatland Programme Conference 2020 - Peatlands: From Strategy to Action. on-line.
Renou-Wilson, F., Premrov, A., Wilson, D., Saunders, M., & Yeluripati, J. (2021). Development of new drainage factor in ECOSSE model to improve water dynamics and prediction of CO2 fluxes from drained peatlands. In EGU21.

Edited Book

Dr Joanna Kacprzyk
Plant Programmed Cell Death Revisited (2021) . Frontiers Media SA.
Assoc Professor Paul McCabe
Plant Programmed Cell Death Revisited (2021) . Frontiers Media SA.

Internet publication

Dr Jan-Robert Baars
Baars, J. -R. (2021). Invasive Species: Quagga mussel. National Biodiversity Data Centre. Retrieved from https://www.biodiversityireland.ie/

Journal article

Dr Jan-Robert Baars
Feeley, H. B., & Baars, J. -R. (2020). Some records of adult stoneflies (Plecoptera), including observations on wing length, from Ireland, 2018-2020.. Bulletin of the Irish Biogeographical Society, 44, 236-241.
Baars, J. R., Minchin, D., Feeley, H. B., Brekkhus, S., & Mauvisseau, Q. (2021). The first record of the invasive alien freshwater amphipod crangonyx floridanus (Bousfield, 1963) (crustacea: Amphipoda) in two irish river systems. BioInvasions Records, 10(3), 629-635.
Dr Harriet Benbow
Benbow, H. R., Brennan, C. J., Zhou, B., Christodoulou, T., Berry, S., Uauy, C., et al. (2020). Insights into the resistance of a synthetically-derived wheat to Septoria tritici blotch disease: Less is more. BMC Plant Biology, 20(1).
Ajaz, S., Benbow, H. R., Christodoulou, T., Uauy, C., & Doohan, F. M. (2021). Evaluation of the susceptibility of modern, wild, ancestral, and mutational wheat lines to Septoria tritici blotch disease. Plant Pathology, 70(5), 1123-1137.
Professor Thomas Bolger
de Castro, F., Adl, S. M., Allesina, S., Bardgett, R. D., Bolger, T., Dalzell, J. J., et al. (2021). Local stability properties of complex, species-rich soil food webs with functional block structure. Ecology and Evolution.
Arroyo., Kenny., & Bolger. (2021). Chemical Fogging and Sampling Using Climbers Provide Complimentary Information on Species Composition and Biodiversity of Mite Assemblages in Forest Canopies. Biology and Environment: Proceedings of the Royal Irish Academy, 121B(3), 175.
Minogue, D., French, P., Bolger, T., & Murphy, P. N. C. (2021). Nitrogen fertilizer replacement value of dairy soiled water in grass swards as affected by timing and rate of application. Grass and Forage Science, 76(2), 270-281.
Seniczak, A., Seniczak, S., Starý, J., Kaczmarek, S., Jordal, B. H., Kowalski, J., et al. (2021). High diversity of mites (Acari: Oribatida, mesostigmata) supports the high conservation value of a broadleaf forest in Eastern Norway. Forests, 12(8).
Dr Ciarán Brennan
Benbow, H. R., Brennan, C. J., Zhou, B., Christodoulou, T., Berry, S., Uauy, C., et al. (2020). Insights into the resistance of a synthetically-derived wheat to Septoria tritici blotch disease: Less is more. BMC Plant Biology, 20(1).
Smith, L., Gibriel, H. A. Y., Brennan, C., del Pino de Elias, M., Twamley, A., Doohan, F., et al. (2020). First Report of Shot Hole Disease on Cherry Laurel (Prunus laurocerasus) Caused by Micrococcus aloeverae in Ireland. Plant disease, 104(10), 2722.
Dr Paul Brooks
Valdor, P. F., Gómez, A. G., Steinberg, P., Tanner, E., Knights, A. M., Seitz, R. D., et al. (2020). A global approach to mapping the environmental risk of harbours on aquatic systems. Marine Policy, 119.
Strain, E. M. A., Steinberg, P. D., Vozzo, M., Johnston, E. L., Abbiati, M., Aguilera, M. A., et al. (2021). A global analysis of complexity–biodiversity relationships on marine artificial structures. Global Ecology and Biogeography, 30(1), 140-153.
Gargan, L. M., Brooks, P. R., Vye, S. R., Ironside, J. E., Jenkins, S. R., Crowe, T. P., & Carlsson, J. (2021). The use of environmental DNA metabarcoding and quantitative PCR for molecular detection of marine invasive non-native species associated with artificial structures. Biological Invasions.
Natanzi, A. S., Thompson, B. J., Brooks, P. R., Crowe, T. P., & McNally, C. (2021). Influence of concrete properties on the initial biological colonisation of marine artificial structures. Ecological Engineering, 159.
Evans, A. J., Lawrence, P. J., Natanzi, A. S., Moore, P. J., Davies, A. J., Crowe, T. P., et al. (2021). Replicating natural topography on marine artificial structures – A novel approach to eco-engineering. Ecological Engineering, 160.
Lawrence, P. J., Evans, A. J., Jackson-Bué, T., Brooks, P. R., Crowe, T. P., Dozier, A. E., et al. (2021). Artificial shorelines lack natural structural complexity across scales. Proceedings of the Royal Society B: Biological Sciences, 288(1951).
Drakard, V. F., Brooks, P., Crowe, T. P., Earp, H. S., Thompson, B., Bourke, N., et al. (2021). Fucus vesiculosus populations on artificial structures have potentially reduced fecundity and are dislodged at greater rates than on natural shores. Marine Environmental Research, 168.
Assoc Professor Jens Carlsson
Collins, P. C., Hunter, W. R., Carlsson, J., & Carlsson, J. (2020). Fortuitous insights into the ecology of a recently charted deep-sea hydrothermal vent, using snails’ feet. Deep-Sea Research Part I: Oceanographic Research Papers, 163.
Yearsley, J. M., Salmanidou, D. M., Carlsson, J., Burns, D., & Van Dover, C. L. (2020). Biophysical models of persistent connectivity and barriers on the northern Mid-Atlantic Ridge. Deep-Sea Research Part II: Topical Studies in Oceanography, 180.
Van Dover, C. L., Colaço, A., Collins, P. C., Croot, P., Metaxas, A., Murton, B. J., et al. (2020). Research is needed to inform environmental management of hydrothermally inactive and extinct polymetallic sulfide (PMS) deposits. Marine Policy, 121.
Tighe, A. J., Gallagher, M. D., Carlsson, J., Matejusova, I., Swords, F., Macqueen, D. J., & Ruane, N. M. (2020). Nanopore whole genome sequencing and partitioned phylogenetic analysis supports a new salmonid alphavirus genotype (SAV7). Diseases of Aquatic Organisms, 142, 203-211.
Gargan, L. M., Mo, T. A., Carlsson, J. E. L., Ball, B., Fossøy, F., & Carlsson, J. (2021). Development of an environmental DNA assay and field validation for the detection of invasive pink salmon Oncorhynchus gorbuscha. Environmental DNA.
Gargan, L. M., Brooks, P. R., Vye, S. R., Ironside, J. E., Jenkins, S. R., Crowe, T. P., & Carlsson, J. (2021). The use of environmental DNA metabarcoding and quantitative PCR for molecular detection of marine invasive non-native species associated with artificial structures. Biological Invasions.
Rotter, A., Barbier, M., Bertoni, F., Bones, A. M., Cancela, M. L., Carlsson, J., et al. (2021). The Essentials of Marine Biotechnology. Frontiers in Marine Science, 8.
Dr Tancredi Caruso
White, H. J., León-Sánchez, L., Burton, V. J., Cameron, E. K., Caruso, T., Cunha, L., et al. (2020). Methods and approaches to advance soil macroecology. Global Ecology and Biogeography, 29(10), 1674-1690.
Montgomery, I., Caruso, T., & Reid, N. (2020). Hedgerows as Ecosystems: Service Delivery, Management, and Restoration. Annual Review of Ecology, Evolution, and Systematics, 51, 81-102.
van den Hoogen, J., Geisen, S., Wall, D. H., Wardle, D. A., Traunspurger, W., de Goede, R. G. M., et al. (2020). A global database of soil nematode abundance and functional group composition. Scientific Data, 7(1).
de Castro, F., Adl, S. M., Allesina, S., Bardgett, R. D., Bolger, T., Dalzell, J. J., et al. (2021). Local stability properties of complex, species-rich soil food webs with functional block structure. Ecology and Evolution.
Pecoraro, L., Caruso, T., Kumar Gupta, V., Borris, R. P., Zhang, Y. C., & Cai, L. (2021). Analysis of macrofungal communities reveals a complex reciprocal influence between Mediterranean montane calcareous grassland and surrounding forest habitats. Journal of Systematics and Evolution, 59(2), 278-288.
Meehan, M. L., Caruso, T., & Lindo, Z. (2021). Short-term intensive warming shifts predator communities (Parasitiformes: Mesostigmata) in boreal forest soils. Pedobiologia, 87-88.
Caruso, T., & Bardgett, R. D. (2021). Variance, locality and structure: Three experimental challenges in the study of the response of soil microbial communities to multiple perturbations. Pedobiologia, 87-88.
Dr Simone Ciuti
Banfield, J. E., Ciuti, S., Nielsen, C. C., & Boyce, M. S. (2020). Cougar roadside habitat selection: Incorporating topography and traffic. Global Ecology and Conservation, 23.
Hart, E. E., Fennessy, J., Hauenstein, S., & Ciuti, S. (2020). Intensity of giraffe locomotor activity is shaped by solar and lunar zeitgebers. Behavioural Processes, 178.
Murphy, K. J., Ciuti, S., & Kane, A. (2020). An introduction to agent-based models as an accessible surrogate to field-based research and teaching. Ecology and Evolution, 10(22), 12482-12498.
Hart, E. E., Fennessy, J., Wells, E., & Ciuti, S. (2021). Seasonal shifts in sociosexual behaviour and reproductive phenology in giraffe. Behavioral Ecology and Sociobiology, 75(1).
Smith, A. F., Bongi, P., & Ciuti, S. (2021). Remote, non-invasive photogrammetry for measuring physical traits in wildlife. Journal of Zoology, 313(4), 250-262.
Amin, B., Jennings, D. J., Smith, A. F., Quinn, M., Chari, S., Haigh, A., et al. (2021). In utero accumulated steroids predict neonate anti-predator response in a wild mammal. Functional Ecology, 35(6), 1255-1267.
Professor Tasman Crowe
Valdor, P. F., Gómez, A. G., Steinberg, P., Tanner, E., Knights, A. M., Seitz, R. D., et al. (2020). A global approach to mapping the environmental risk of harbours on aquatic systems. Marine Policy, 119.
Mayer-Pinto, M., Ledet, J., Crowe, T. P., & Johnston, E. L. (2020). Sublethal effects of contaminants on marine habitat-forming species: a review and meta-analysis. Biological Reviews, 95(6), 1554-1573.
Strain, E. M. A., Steinberg, P. D., Vozzo, M., Johnston, E. L., Abbiati, M., Aguilera, M. A., et al. (2021). A global analysis of complexity–biodiversity relationships on marine artificial structures. Global Ecology and Biogeography, 30(1), 140-153.
Natanzi, A. S., Thompson, B. J., Brooks, P. R., Crowe, T. P., & McNally, C. (2021). Influence of concrete properties on the initial biological colonisation of marine artificial structures. Ecological Engineering, 159.
Evans, A. J., Lawrence, P. J., Natanzi, A. S., Moore, P. J., Davies, A. J., Crowe, T. P., et al. (2021). Replicating natural topography on marine artificial structures – A novel approach to eco-engineering. Ecological Engineering, 160.
Lawrence, P. J., Evans, A. J., Jackson-Bué, T., Brooks, P. R., Crowe, T. P., Dozier, A. E., et al. (2021). Artificial shorelines lack natural structural complexity across scales. Proceedings of the Royal Society B: Biological Sciences, 288(1951).
Drakard, V. F., Brooks, P., Crowe, T. P., Earp, H. S., Thompson, B., Bourke, N., et al. (2021). Fucus vesiculosus populations on artificial structures have potentially reduced fecundity and are dislodged at greater rates than on natural shores. Marine Environmental Research, 168.
Professor Fiona Doohan
Benbow, H. R., Brennan, C. J., Zhou, B., Christodoulou, T., Berry, S., Uauy, C., et al. (2020). Insights into the resistance of a synthetically-derived wheat to Septoria tritici blotch disease: Less is more. BMC Plant Biology, 20(1).
Smith, L., Gibriel, H. A. Y., Brennan, C., del Pino de Elias, M., Twamley, A., Doohan, F., et al. (2020). First Report of Shot Hole Disease on Cherry Laurel (Prunus laurocerasus) Caused by Micrococcus aloeverae in Ireland. Plant disease, 104(10), 2722.
Karki, S. J., Reilly, A., Zhou, B., Mascarello, M., Burke, J., Doohan, F., et al. (2021). A small secreted protein from Zymoseptoria tritici interacts with a wheat E3 ubiquitin ligase to promote disease. Journal of Experimental Botany, 72(2), 733-746.
Ajaz, S., Benbow, H. R., Christodoulou, T., Uauy, C., & Doohan, F. M. (2021). Evaluation of the susceptibility of modern, wild, ancestral, and mutational wheat lines to Septoria tritici blotch disease. Plant Pathology, 70(5), 1123-1137.
Assoc Professor Evelyn Doyle
Lyons, T., Jahns, H., Brady, J., O’Hara, E., Waters, S. M., Kenny, D., et al. (2020). Integrated analyses of the microbiological, immunological and ontological transitions in the calf ileum during early life. Scientific Reports, 10(1).
Dr Elke Eichelmann
Ma, S., Eichelmann, E., Wolf, S., Rey-Sanchez, C., & Baldocchi, D. D. (2020). Transpiration and evaporation in a Californian oak-grass savanna: Field measurements and partitioning model results. Agricultural and Forest Meteorology, 295.
Moran, C. A., Eichelmann, E., & Buggy, C. J. (2021). The challenge of “Depeche Mode” in the fashion industry – Does the industry have the capacity to become sustainable through circular economic principles, a scoping review. Sustainable Environment, 7(1).
Delwiche, K. B., Knox, S. H., Malhotra, A., Fluet-Chouinard, E., McNicol, G., Feron, S., et al. (2021). FLUXNET-CH4: A global, multi-ecosystem dataset and analysis of methane seasonality from freshwater wetlands. Earth System Science Data, 13(7), 3607-3689.
Dr Wieland Fricke
Saini, G., & Fricke, W. (2020). Photosynthetically active radiation impacts significantly on root and cell hydraulics in barley (Hordeum vulgare L.). Physiologia Plantarum, 170(3), 357-372.
Knipfer, T., Danjou, M., Vionne, C., & Fricke, W. (2021). Salt stress reduces root water uptake in barley (Hordeum vulgare L.) through modification of the transcellular transport path. Plant Cell and Environment, 44(2), 458-475.
Burke, S., Sadaune, E., Rognon, L., Fontana, A., Jourdrin, M., & Fricke, W. (2021). A redundant hydraulic function of root hairs in barley plants grown in hydroponics. Functional Plant Biology, 48(4), 448-459.
Mr CARL FRISK
Apangu, G. P., Frisk, C. A., Adams-Groom, B., Satchwell, J., Pashley, C. H., & Skjøth, C. A. (2020). Air mass trajectories and land cover map reveal cereals and oilseed rape as major local sources of Alternaria spores in the Midlands, UK. Atmospheric Pollution Research, 11(9), 1668-1679.
Kurganskiy, A., Creer, S., de Vere, N., Griffith, G. W., Osborne, N. J., Wheeler, B. W., et al. (2021). Predicting the severity of the grass pollen season and the effect of climate change in Northwest Europe.. Science advances, 7(13).
Rowney, F. M., Brennan, G. L., Skjøth, C. A., Griffith, G. W., McInnes, R. N., Clewlow, Y., et al. (2021). Environmental DNA reveals links between abundance and composition of airborne grass pollen and respiratory health.. Current biology : CB, 31(9), 1995-2003.e4.
Hylander, K., Frisk, C. A., Nemomissa, S., & Johansson, M. U. (2021). Rapid post-fire re-assembly of species-rich bryophyte communities in Afroalpine heathlands. Journal of Vegetation Science, 32(3).
Frisk, C. A., Adams-Groom, B., & Skjøth, C. A. (2021). Stochastic flowering phenology in Dactylis glomerata populations described by Markov chain modelling. Aerobiologia, 37(2), 293-308.
Dr Andrea Fuchs
Li, L., Fuchs, A., Ortega, S. H., Xue, B., & Casper, P. (2021). Spatial methane pattern in a deep freshwater lake: Relation to water depth and topography. Science of the Total Environment, 764.
Dr Hugo Armando Guillen Ramirez
Aguilera-Mendoza, L., Marrero-Ponce, Y., García-Jacas, C. R., Chavez, E., Beltran, J. A., Guillen-Ramirez, H. A., & Brizuela, C. A. (2020). Automatic construction of molecular similarity networks for visual graph mining in chemical space of bioactive peptides: an unsupervised learning approach. Scientific Reports, 10(1).
Bosch-Guiteras, N., Uroda, T., Guillen-Ramirez, H. A., Riedo, R., Gazdhar, A., Esposito, R., et al. (2021). Enhancing CRISPR deletion via pharmacological delay of DNA-PKcs. Genome Research, 31(3), 461-471.
Mr Zixia Huang
Moreno Santillán, D. D., Lama, T. M., Gutierrez Guerrero, Y. T., Brown, A. M., Donat, P., Zhao, H., et al. (2021). Large-scale genome sampling reveals unique immunity and metabolic adaptations in bats. Molecular Ecology.
Huang, Z., & Teeling, E. C. (2021) Bat genomes: unveiling the secrets of their superpowers. TheScienceBreaker, 07(02).
Kacprzyk, J., Locatelli, A. G., Hughes, G. M., Huang, Z., Clarke, M., Gorbunova, V., et al. (2021). Evolution of mammalian longevity: age-related increase in autophagy in bats compared to other mammals. Aging, 13(6), 7998-8025.
Dr Graham Hughes
Damas, J., Hughes, G. M., Keough, K. C., Painter, C. A., Persky, N. S., Corbo, M., et al. (2020). Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates. Proceedings of the National Academy of Sciences of the United States of America, 117(36), 22311-22322.
Gordon, D. E., Hiatt, J., Bouhaddou, M., Rezelj, V. V., Ulferts, S., Braberg, H., et al. (2020). Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.. Science (New York, N.Y.), 370(6521).
Kacprzyk, J., Locatelli, A. G., Hughes, G. M., Huang, Z., Clarke, M., Gorbunova, V., et al. (2021). Evolution of mammalian longevity: age-related increase in autophagy in bats compared to other mammals. Aging, 13(6), 7998-8025.
Moreno Santillán, D. D., Lama, T. M., Gutierrez Guerrero, Y. T., Brown, A. M., Donat, P., Zhao, H., et al. (2021). Large-scale genome sampling reveals unique immunity and metabolic adaptations in bats. Molecular Ecology.
Narancic, T., Salvador, M., Hughes, G. M., Beagan, N., Abdulmutalib, U., Kenny, S. T., et al. (2021). Genome analysis of the metabolically versatile Pseudomonas umsongensis GO16: the genetic basis for PET monomer upcycling into polyhydroxyalkanoates. Microbial Biotechnology.
Dr Darrin Hulsey
Fraser, G. J., & Hulsey, C. D. (2020). Biology at the Cusp: Teeth as a Model Phenotype for Integrating Developmental Genomics, Biomechanics, and Ecology. Integrative and Comparative Biology, 60(3), 559-562.
Hulsey, C. D., Meyer, A., & Streelman, J. T. (2020). Convergent Evolution of Cichlid Fish Pharyngeal Jaw Dentitions in Mollusk-Crushing Predators: Comparative X-Ray Computed Tomography of Tooth Sizes, Numbers, and Replacement.. Integrative and comparative biology, 60(3), 656-664.
Gorman, C. E., & Hulsey, C. D. (2020). Non-trophic Functional Ecology of Vertebrate Teeth: A Review.. Integrative and comparative biology, 60(3), 665-675.
Hulsey, C. D., Cohen, K. E., Johanson, Z., Karagic, N., Meyer, A., Miller, C. T., et al. (2020). Grand Challenges in Comparative Tooth Biology.. Integrative and comparative biology, 60(3), 563-580.
Karagic, N., Meyer, A., & Hulsey, C. D. (2020). Phenotypic Plasticity in Vertebrate Dentitions.. Integrative and comparative biology, 60(3), 608-618.
Karagic, N., Schneider, R. F., Meyer, A., & Hulsey, C. D. (2020). A Genomic Cluster Containing Novel and Conserved Genes is Associated with Cichlid Fish Dental Developmental Convergence.. Molecular biology and evolution, 37(11), 3165-3174.
Kautt, A. F., Kratochwil, C. F., Nater, A., Machado-Schiaffino, G., Olave, M., Henning, F., et al. (2020). Contrasting signatures of genomic divergence during sympatric speciation.. Nature, 588(7836), 106-111.
Xiong, P., Hulsey, C. D., Fruciano, C., Wong, W. Y., Nater, A., Kautt, A. F., et al. (2021). The comparative genomic landscape of adaptive radiation in crater lake cichlid fishes. Molecular Ecology, 30(4), 955-972.

Dr Rory Johnson
Borsari, B., Abad, A., Klein, C., Nurtdinov, R., Esteban, A., Palumbo, E., et al. (2020). Dynamics of gene expression and chromatin marking during cell state transition.
Shuai, S., Abascal, F., Amin, S. B., Bader, G. D., Bandopadhayay, P., Barenboim, J., et al. (2020). Combined burden and functional impact tests for cancer driver discovery using DriverPower. Nature Communications, 11(1).
Carlevaro-Fita, J., Lanzós, A., Feuerbach, L., Hong, C., Mas-Ponte, D., Pedersen, J. S., et al. (2020). Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis. Communications Biology, 3(1).
Paczkowska, M., Barenboim, J., Sintupisut, N., Fox, N. S., Zhu, H., Abd-Rabbo, D., et al. (2020). Integrative pathway enrichment analysis of multivariate omics data. Nature Communications, 11(1).
Reyna, M. A., Haan, D., Paczkowska, M., Verbeke, L. P. C., Vazquez, M., Kahraman, A., et al. (2020). Pathway and network analysis of more than 2500 whole cancer genomes. Nature Communications, 11(1).
Li, C. H., Prokopec, S. D., Sun, R. X., Yousif, F., Schmitz, N., Al-Shahrour, F., et al. (2020). Sex differences in oncogenic mutational processes. Nature Communications, 11(1).
Bailey, M. H., Meyerson, W. U., Dursi, L. J., Wang, L. B., Dong, G., Liang, W. W., et al. (2020). Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications, 11(1).
Pulido-Quetglas, C., & Johnson, R. (2021). Designing libraries for pooled CRISPR functional screens of long noncoding RNAs. Mammalian Genome.
Carbonell Sala, S., Uszczynska-Ratajczak, B., Lagarde, J., Johnson, R., & Guigó, R. (2021). Annotation of Full-Length Long Noncoding RNAs with Capture Long-Read Sequencing (CLS).. Methods in molecular biology (Clifton, N.J.), 2254, 133-159.
Bosch-Guiteras, N., Uroda, T., Guillen-Ramirez, H. A., Riedo, R., Gazdhar, A., Esposito, R., et al. (2021). Enhancing CRISPR deletion via pharmacological delay of DNA-PKcs. Genome Research, 31(3), 461-471.
Frankish, A., Diekhans, M., Jungreis, I., Lagarde, J., Loveland, J. E., Mudge, J. M., et al. (2021). GENCODE 2021. Nucleic Acids Research, 49(D1), D916-D923.
Vancura, A., Lanzós, A., Bosch-Guiteras, N., Esteban, M. T., Gutierrez, A. H., Haefliger, S., & Johnson, R. (2021). Cancer LncRNA Census 2 (CLC2): an enhanced resource reveals clinical features of cancer lncRNAs.. NAR cancer, 3(2), zcab013.
Dr Julia Jones
Botías, C., Jones, J. C., Pamminger, T., Bartomeus, I., Hughes, W. O. H., & Goulson, D. (2021). Multiple stressors interact to impair the performance of bumblebee Bombus terrestris colonies. Journal of Animal Ecology, 90(2), 415-431.
Fruciano, C., Franchini, P., & Jones, J. C. (2021). Capturing the rapidly evolving study of adaptation. Journal of Evolutionary Biology, 34(6), 856-865.
Christmas, M. J., Jones, J. C., Olsson, A., Wallerman, O., Bunikis, I., Kierczak, M., et al. (2021). Genetic Barriers to Historical Gene Flow between Cryptic Species of Alpine Bumblebees Revealed by Comparative Population Genomics. Molecular Biology and Evolution, 38(8), 3126-3143.
Dr Joanna Kacprzyk
Kacprzyk, J., Locatelli, A. G., Hughes, G. M., Huang, Z., Clarke, M., Gorbunova, V., et al. (2021). Evolution of mammalian longevity: age-related increase in autophagy in bats compared to other mammals. Aging, 13(6), 7998-8025.
Kacprzyk, J., Burke, R., Schwarze, J., & McCabe, P. F. (2021). Plant programmed cell death meets auxin signalling. FEBS Journal.
Kacprzyk, J., Gunawardena, A. H. L. A. N., Bouteau, F., & McCabe, P. F. (2021). Editorial: Plant Programmed Cell Death Revisited. Frontiers in Plant Science, 12.
Dr Adam Kane
Murphy, K. J., Ciuti, S., & Kane, A. (2020). An introduction to agent-based models as an accessible surrogate to field-based research and teaching. Ecology and Evolution, 10(22), 12482-12498.
Fernández-Bellon, D., & Kane, A. (2020). Unpaid ‘CV-boosting’ opportunities undermine efforts to reduce pressure and increase diversity of early-career researchers. Nature Ecology and Evolution, 4(12), 1570.
Doyle, S., Cabot, D., Griffin, L., Kane, A., Colhoun, K., Bearhop, S., & McMahon, B. J. (2021). Spring and autumn movements of an Arctic bird in relation to temperature and primary production. Journal of Avian Biology.
Assoc Professor Mary Kelly-Quinn
Farrell, C. A., Coleman, L., Kelly-Quinn, M., Obst, C. G., Eigenraam, M., Norton, D., et al. (2021). Applying the system of environmental economic accounting-ecosystem accounting (Seea-ea) framework at catchment scale to develop ecosystem extent and condition accounts. One Ecosystem, 6.
Getachew, M., Mulat, W. L., Mereta, S. T., Gebrie, G. S., & Kelly-Quinn, M. (2021). Challenges for water quality protection in the greater metropolitan area of Addis Ababa and the upper awash basin, Ethiopia-time to take stock. Environmental Reviews, 29(1), 87-99.
Casserly, C. M., Turner, J. N., O’ Sullivan, J. J., Bruen, M., Bullock, C., Atkinson, S., & Kelly-Quinn, M. (2021). Effect of low-head dams on reach-scale suspended sediment dynamics in coarse-bedded streams. Journal of Environmental Management, 277.
Farrell, C., Coleman, L., Kelly-Quinn, M., Obst, C., Eigenraam, M., Norton, D., et al. (2021). Supplementary material 4 from: Farrell CA, Coleman L, Kelly-Quinn M, Obst CG, Eigenraam M, Norton D, O`Donoghue C, Kinsella S, Delargy O, Stout JC (2021) Applying the System of Environmental Economic Accounting-Ecosystem Accounting (SEEA-EA) framework at catchment scale to develop ecosystem extent and condition accounts. One Ecosystem 6: e65582. https://doi.org/10.3897/oneeco.6.e65582.
Farrell, C., Coleman, L., Kelly-Quinn, M., Obst, C., Eigenraam, M., Norton, D., et al. (2021). Supplementary material 2 from: Farrell CA, Coleman L, Kelly-Quinn M, Obst CG, Eigenraam M, Norton D, O`Donoghue C, Kinsella S, Delargy O, Stout JC (2021) Applying the System of Environmental Economic Accounting-Ecosystem Accounting (SEEA-EA) framework at catchment scale to develop ecosystem extent and condition accounts. One Ecosystem 6: e65582. https://doi.org/10.3897/oneeco.6.e65582.
Farrell, C., Coleman, L., Kelly-Quinn, M., Obst, C., Eigenraam, M., Norton, D., et al. (2021). Supplementary material 1 from: Farrell CA, Coleman L, Kelly-Quinn M, Obst CG, Eigenraam M, Norton D, O`Donoghue C, Kinsella S, Delargy O, Stout JC (2021) Applying the System of Environmental Economic Accounting-Ecosystem Accounting (SEEA-EA) framework at catchment scale to develop ecosystem extent and condition accounts. One Ecosystem 6: e65582. https://doi.org/10.3897/oneeco.6.e65582.
Farrell, C., Coleman, L., Kelly-Quinn, M., Obst, C., Eigenraam, M., Norton, D., et al. (2021). Supplementary material 3 from: Farrell CA, Coleman L, Kelly-Quinn M, Obst CG, Eigenraam M, Norton D, O`Donoghue C, Kinsella S, Delargy O, Stout JC (2021) Applying the System of Environmental Economic Accounting-Ecosystem Accounting (SEEA-EA) framework at catchment scale to develop ecosystem extent and condition accounts. One Ecosystem 6: e65582. https://doi.org/10.3897/oneeco.6.e65582.
Aschale, M., Sileshi, Y., Kelly-Quinn, M., & Hailu, D. (2021). Multivariate analysis of potentially toxic elements in surface waters in Ethiopia. Applied Water Science, 11(5).
Weekes, L., FitzPatrick, Ú., & Kelly-Quinn, M. (2021). Assessment of the efficiency of river macrophytes to detect water-column nutrient levels and other environmental conditions in Irish rivers. Hydrobiologia, 848(11), 2797-2814.
Dr Ibrahim Khalil
Walkiewicz, A., Bulak, P., Brzezinska, M., Khalil, M. I., & Osborne, B. (2021). Variations in soil properties and co<inf>2</inf> emissions of a temperate forest gully soil along a topographical gradient. Forests, 12(2), 1-15.
Grosz, B., Well, R., Dechow, J. R., Köster., Khalil, M. I., & et al.. (2021). Evaluation of denitrification from three biogeochemical models using laboratory measurements of N2, N2O and CO2.. Biogeosciences.
Ms Tamsin Lyons
Lyons, T., Jahns, H., Brady, J., O’Hara, E., Waters, S. M., Kenny, D., et al. (2020). Integrated analyses of the microbiological, immunological and ontological transitions in the calf ileum during early life. Scientific Reports, 10(1).
Mr Stephen Mahony
JEFFREY W., S., Mahony, S., RACHUNLIU G., K., TSHERING, N., PHILLIP, J., & MATTHEW C., F. (2020). "Preliminary Survey Reveals No Evidence of Batrachochytrium dendrobatidis in the Kingdom of Bhutan". Herpetological Review, 51(3), 494-497.
Assoc Professor Paul McCabe
Chua, A., Sherwood, O. L., Fitzhenry, L., Ng, C. K. Y., McCabe, P. F., & Daly, C. T. (2020). Cyanobacteria-Derived Proline Increases Stress Tolerance in Arabidopsis thaliana Root Hairs by Suppressing Programmed Cell Death. Frontiers in Plant Science, 11.
Schilling, S., Dowling, C. A., Shi, J., Ryan, L., Hunt, D. J. L., O’Reilly, E., et al. (2021). The cream of the crop: Biology, breeding, and applications of Cannabis sativa. Annual Plant Reviews Online, 4(2), 471-528.
Kacprzyk, J., Burke, R., Schwarze, J., & McCabe, P. F. (2021). Plant programmed cell death meets auxin signalling. FEBS Journal.
Belton, S., McCabe, P. F., & Ng, C. K. Y. (2021). The cyanobacterium, Nostoc punctiforme can protect against programmed cell death and induce defence genes in Arabidopsis thaliana. Journal of Plant Interactions, 16(1), 64-74.
Kacprzyk, J., Gunawardena, A. H. L. A. N., Bouteau, F., & McCabe, P. F. (2021). Editorial: Plant Programmed Cell Death Revisited. Frontiers in Plant Science, 12.
Dr Rainer Melzer
Schilling, S., Dowling, C. A., Shi, J., Ryan, L., Hunt, D. J. L., O’Reilly, E., et al. (2021). The cream of the crop: Biology, breeding, and applications of Cannabis sativa. Annual Plant Reviews Online, 4(2), 471-528.
Käppel, S., Eggeling, R., Rümpler, F., Groth, M., Melzer, R., & Theißen, G. (2021). DNA-binding properties of the MADS-domain transcription factor SEPALLATA3 and mutant variants characterized by SELEX-seq. Plant Molecular Biology, 105(4-5), 543-557.
Dowling, C. A., Melzer, R., & Schilling, S. (2021). Timing is Everything: the Genetics of Flowering Time in Cannabis Sativa. Biochemist, 43(3), 34-38.
Dr Virginia Morera-Pujol
Davies, T. E., Carneiro, A. P. B., Tarzia, M., Wakefield, E., Hennicke, J. C., Frederiksen, M., et al. (2021). Multispecies tracking reveals a major seabird hotspot in the North Atlantic. Conservation Letters.
Beal, M., Oppel, S., Handley, J., Pearmain, E. J., Morera-Pujol, V., Carneiro, A. P. B., et al. (2021). track2KBA: An R package for identifying important sites for biodiversity from tracking data. Methods in Ecology and Evolution.
Halpin, L. R., Ross, J. D., Ramos, R., Mott, R., Carlile, N., Golding, N., et al. (2021). Double-tagging scores of seabirds reveals that light-level geolocator accuracy is limited by species idiosyncrasies and equatorial solar profiles. Methods in Ecology and Evolution.
Beal, M., Dias, M. P., Phillips, R. A., Oppel, S., Hazin, C., Pearmain, E. J., et al. (2021). Global political responsibility for the conservation of albatrosses and large petrels. Science Advances, 7(10).
Reyes-González, J. M., De Felipe, F., Morera-Pujol, V., Soriano-Redondo, A., Navarro-Herrero, L., Zango, L., et al. (2021). Sexual segregation in the foraging behaviour of a slightly dimorphic seabird: Influence of the environment and fishery activity. Journal of Animal Ecology, 90(5), 1109-1121.
Professor Christoph Mueller
Jahangir, M. M. R., Fenton, O., Carolan, R., Harrington, R., Johnston, P., Zaman, M., et al. (2020). Application of <sup>15</sup>N tracing for estimating nitrogen cycle processes in soils of a constructed wetland. Water Research, 183.
Hao, T., Zhang, Y., Zhang, J., Müller, C., Li, K., Zhang, K., et al. (2020). Chronic nitrogen addition differentially affects gross nitrogen transformations in alpine and temperate grassland soils. Soil Biology and Biochemistry, 149.
Lama, S., Kuhn, T., Lehmann, M. F., Müller, C., Gonzalez, O., Eisenhauer, N., et al. (2020). The biodiversity - N cycle relationship: a <sup>15</sup>N tracer experiment with soil from plant mixtures of varying diversity to model N pool sizes and transformation rates. Biology and Fertility of Soils, 56(7), 1047-1061.
Xie, Y., Yang, C., Ma, E., Tan, H., Zhu, T., & Müller, C. (2020). Biochar stimulates NH<inf>4</inf><sup>+</sup> turnover while decreasing NO<inf>3</inf><sup>-</sup> production and N<inf>2</inf>O emissions in soils under long-term vegetable cultivation. Science of the Total Environment, 737.
Yu, L., Harris, E., Lewicka-Szczebak, D., Barthel, M., Blomberg, M. R. A., Harris, S. J., et al. (2020). What can we learn from N<inf>2</inf>O isotope data? – Analytics, processes and modelling. Rapid Communications in Mass Spectrometry, 34(20).
Friedl, J., Scheer, C., Rowlings, D. W., Deltedesco, E., Gorfer, M., De Rosa, D., et al. (2020). Effect of the nitrification inhibitor 3,4-dimethylpyrazole phosphate (DMPP) on N-turnover, the N<inf>2</inf>O reductase-gene nosZ and N<inf>2</inf>O:N<inf>2</inf> partitioning from agricultural soils. Scientific Reports, 10(1).
Haider, G., Joseph, S., Steffens, D., Müller, C., Taherymoosavi, S., Mitchell, D., & Kammann, C. I. (2020). Mineral nitrogen captured in field-aged biochar is plant-available. Scientific Reports, 10(1).
Garousi, F., Shan, Z., Ni, K., Yang, H., Shan, J., Cao, J., et al. (2021). Decreased inorganic N supply capacity and turnover in calcareous soil under degraded rubber plantation in the tropical karst region. Geoderma, 381.
Zhang, Y., Zhang, J., Chapman, S. J., Yao, H., Zheng, N., & Müller, C. (2021). Tea plantation affects soil nitrogen transformations in subtropical China. Journal of Soils and Sediments, 21(1), 441-451.
Dawar, K., Khan, H., Zaman, M., Muller, C., Alam, S. S., Fahad, S., et al. (2021). The Effect of Biochar and Nitrogen Inhibitor on Ammonia and Nitrous Oxide Emissions and Wheat Productivity. Journal of Plant Growth Regulation.
O'Neill, R. M., Krol, D. J., Wall, D., Lanigan, G. J., Renou-Wilson, F., Richards, K. G., et al. (2021). Assessing the impact of long-term soil phosphorus on N-transformation pathways using <sup>15</sup>N tracing. Soil Biology and Biochemistry, 152.
Cheng, Y., Zhang, H., Chen, Z., Wang, J., Cai, Z., Sun, N., et al. (2021). Contrasting effects of different pH-raising materials on N<inf>2</inf>O emissions in acidic upland soils. European Journal of Soil Science, 72(1), 432-445.
Jahangir, M. M. R., Begum, R., Jahiruddin, M., Dawar, K., Zaman, M., Bell, R. W., et al. (2021). Reduced tillage with residue retention and nitrogen application rate increase N<inf>2</inf>O fluxes from irrigated wheat in a subtropical floodplain soil. Agriculture, Ecosystems and Environment, 306.
Lu, M., Cheng, S., Fang, H., Xu, M., Yang, Y., Li, Y., et al. (2021). Organic nitrogen addition causes decoupling of microbial nitrogen cycles by stimulating gross nitrogen transformation in a temperate forest soil. Geoderma, 385.
Loick, N., Dixon, E., Matthews, G. P., Müller, C., Ciganda, V. S., López-Aizpún, M., et al. (2021). Application of a triple <sup>15</sup>N tracing technique to elucidate N transformations in a UK grassland soil. Geoderma, 385.
Rex, D., Clough, T. J., Lanigan, G. J., Jansen-Willems, A. B., Condron, L. M., Richards, K. G., & Müller, C. (2021). Gross N transformations vary with soil moisture and time following urea deposition to a pasture soil. Geoderma, 386.
DAWAR, K., SARDAR, K., ZAMAN, M., MÜLLER, C., SANZ-COBENA, A., KHAN, A., et al. (2021). Effects of the nitrification inhibitor nitrapyrin and the plant growth regulator gibberellic acid on yield-scale nitrous oxide emission in maize fields under hot climatic conditions. Pedosphere, 31(2), 323-331.
MONGE-MUÑOZ, M., URQUIAGA, S., MÜLLER, C., CAMBRONERO-HEINRICHS, J. C., ZAMAN, M., CHINCHILLA-SOTO, C., et al. (2021). Nitrapyrin effectiveness in reducing nitrous oxide emissions decreases at low doses of urea in an Andosol. Pedosphere, 31(2), 303-313.
SANZ-COBENA, A., DING, W., MÜLLER, C., ZAMAN, M., & HENG, L. (2021). Mitigating greenhouse gas emissions from croplands and pasturelands — climate-smart agriculture. Pedosphere, 31(2), 227-230.
BORZOUEI, A., MANDER, U., TEEMUSK, A., SANZ-COBENA, A., ZAMAN, M., KIM, D. G., et al. (2021). Effects of the nitrification inhibitor nitrapyrin and tillage practices on yield-scaled nitrous oxide emission from a maize field in Iran. Pedosphere, 31(2), 314-322.
PÉREZ-CASTILLO, A. G., CHINCHILLA-SOTO, C., ELIZONDO-SALAZAR, J. A., BARBOZA, R., KIM, D. G., MÜLLER, C., et al. (2021). Nitrification inhibitor nitrapyrin does not affect yield-scaled nitrous oxide emissions in a tropical grassland. Pedosphere, 31(2), 265-278.
Liao, X., Müller, C., Jansen-Willems, A., Luo, J., Lindsey, S., Liu, D., et al. (2021). Field-aged biochar decreased N<inf>2</inf>O emissions by reducing autotrophic nitrification in a sandy loam soil. Biology and Fertility of Soils, 57(4), 471-483.
Dr Declan Murray
Murray, D., O'Connor, J. P., Langton, P. H., & Ashe, P. J. (2020). Amendments and clarification of details for some sites in "Distribution records of Irish Chironomidae (Diptera) Parts 1-3".. Bulletin of the Irish Biogeographical Society, 44, 167-177.
Ms Margaritha Mysior
Mysior, M. M., & Simpson, J. C. (2021). Emerging roles for Rho GTPases operating at the Golgi complex. Small GTPases, 12(5-6), 311-322.
Dr Sonia Negrao
Awlia, M., Alshareef, N., Saber, N., Korte, A., Oakey, H., Panzarová, K., et al. (2021). Genetic mapping of the early responses to salt stress in Arabidopsis thaliana. Plant Journal, 107(2), 544-563.
Assoc Professor Carl Ng
Chua, A., Sherwood, O. L., Fitzhenry, L., Ng, C. K. Y., McCabe, P. F., & Daly, C. T. (2020). Cyanobacteria-Derived Proline Increases Stress Tolerance in Arabidopsis thaliana Root Hairs by Suppressing Programmed Cell Death. Frontiers in Plant Science, 11.
Brett, S., & Ng, C. K. Y. (2021). A simple method for the isolation of leaf epidermis from graminaceous species for studying stomatal physiology. Cereal Research Communications.
Belton, S., McCabe, P. F., & Ng, C. K. Y. (2021). The cyanobacterium, Nostoc punctiforme can protect against programmed cell death and induce defence genes in Arabidopsis thaliana. Journal of Plant Interactions, 16(1), 64-74.

Assoc Professor Kay Nolan
Jahns, H., Vernau, K. M., Nolan, C. M., O’Neill, E. J., Shiel, R. E., & Shelton, G. D. (2020). Polyneuropathy in Young Siberian Huskies Caused by Degenerative and Inflammatory Diseases. Veterinary Pathology, 57(5), 666-674.
Brabazon, D. C., Callanan, J. J., & Nolan, C. M. (2021). Imprinting of canine IGF2 and H19. Animal Genetics.
Shiel, R. E., Nolan, C. M., Nally, J. E., Refsal, K. R., & Mooney, C. T. (2021). Qualitative and semiquantitative assessment of thyroid hormone binding proteins in greyhounds and other dog breeds. Domestic Animal Endocrinology, 76.
Dr Darren O'Connell
O'Connell, D. P., Kelly, D. J., Analuddin, K., Karya, A., Marples, N. M., & Martin, T. E. (2020). Adapt taxonomy to conservation goals. Science, 369(6508), 1172.
O'Connell, D. P., Martin, T. E., Kelly, D. J., Marples, N. M., Analuddin, K., & Karya, A. (2021). Threats to an undescribed songbird species in Indonesia. Oryx, 55(1), 10.
Ó Marcaigh, F., Kelly, D. J., O'Connell, D. P., Dunleavy, D., Clark, A., Lawless, N., et al. (2021). Evolution in the understorey: The Sulawesi babbler Pellorneum celebense (Passeriformes: Pellorneidae) has diverged rapidly on land-bridge islands in the Wallacean biodiversity hotspot. Zoologischer Anzeiger, 293, 314-325.
Professor Bruce Osborne
Thioune, E. H., Strickler, S., Gallagher, T., Charpagne, A., Decombes, P., Osborne, B., & McCarthy, J. (2020). Temperature Impacts the Response of Coffea canephora to Decreasing Soil Water Availability. Tropical Plant Biology, 13(3), 236-250.
Mantoani, M. C., González, A. B., Sancho, L. G., & Osborne, B. A. (2020). Growth, phenology and N-utilization by invasive populations of Gunnera tinctoria. Journal of Plant Ecology, 13(5), 589-600.
Zhang, Y., Zou, J., Meng, D., Dang, S., Zhou, J., Osborne, B., et al. (2020). Effect of soil microorganisms and labile C availability on soil respiration in response to litter inputs in forest ecosystems: A meta-analysis. Ecology and Evolution, 10(24), 13602-13612.
Bond-Lamberty, B., Christianson, D. S., Malhotra, A., Pennington, S. C., Sihi, D., AghaKouchak, A., et al. (2020). COSORE: A community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data. Global Change Biology, 26(12), 7268-7283.
Zou, J., Li, Q., Osborne, B., & Luo, Y. (2020). Dominant role of nitrogen stoichiometric flexibility in ecosystem carbon storage under elevated CO<inf>2</inf>. Science of the Total Environment, 747.
Zou, J., & Osborne, B. (2020). No effect of warming and watering on soil nitrous oxide fluxes in a temperate sitka spruce forest ecosystem. Journal of Integrative Environmental Sciences, 17(3), 83-96.
Walkiewicz, A., Bulak, P., Brzezinska, M., Khalil, M. I., & Osborne, B. (2021). Variations in soil properties and co<inf>2</inf> emissions of a temperate forest gully soil along a topographical gradient. Forests, 12(2), 1-15.
Zou, J., Wu, J., Osborne, B., Tobin, B., & Luo, Y. (2021). Nitrogen accumulation, rather than carbon: Nitrogen stoichiometric variation, underlies carbon storage during forest succession. Environmental Research Letters, 16(2).
Yiotis, C., Mcelwain, J. C., & Osborne, B. A. (2021). Enhancing the productivity of ryegrass at elevated CO<inf>2</inf>is dependent on tillering and leaf area development rather than leaf-level photosynthesis. Journal of Experimental Botany, 72(5), 1962-1977.
Zou, J., & Osborne, B. (2021). Spatially related sampling uncertainty in the assessment of labile soil carbon and nitrogen in an irish forest plantation. Applied Sciences (Switzerland), 11(5), 1-13.
Mantoani, M. C., & Osborne, B. A. (2021). Alien plant introductions and greenhouse gas emissions: Insights from Gunnera tinctoria invasions. Science of the Total Environment, 775.
Abbasi, A. Z., Bilal, M., Khurshid, G., Yiotis, C., Zeb, I., Hussain, J., et al. (2021). Expression of cyanobacterial genes enhanced CO<inf>2</inf> assimilation and biomass production in transgenic Arabidopsis thaliana. PeerJ, 9.
Assoc Professor Antoinette Perry
Schilling, S., Dowling, C. A., Shi, J., Ryan, L., Hunt, D. J. L., O’Reilly, E., et al. (2021). The cream of the crop: Biology, breeding, and applications of Cannabis sativa. Annual Plant Reviews Online, 4(2), 471-528.
Dr Florence Renou-Wilson
O'Neill, R. M., Krol, D. J., Wall, D., Lanigan, G. J., Renou-Wilson, F., Richards, K. G., et al. (2021). Assessing the impact of long-term soil phosphorus on N-transformation pathways using <sup>15</sup>N tracing. Soil Biology and Biochemistry, 152.
Premrov, A., Wilson, D., Saunders, M., Yeluripati, J., & Renou-Wilson, F. (2021). CO<inf>2</inf> fluxes from drained and rewetted peatlands using a new ECOSSE model water table simulation approach. Science of the Total Environment, 754.
Dr Susanne Schilling
Schilling, S., Dowling, C. A., Shi, J., Ryan, L., Hunt, D. J. L., O’Reilly, E., et al. (2021). The cream of the crop: Biology, breeding, and applications of Cannabis sativa. Annual Plant Reviews Online, 4(2), 471-528.
Dowling, C. A., Melzer, R., & Schilling, S. (2021). Timing is Everything: the Genetics of Flowering Time in Cannabis Sativa. Biochemist, 43(3), 34-38.
Professor Jeremy Simpson
Hifni, B., Khan, M., Devereux, S. J., Byrne, M. H., Quinn, S. J., & Simpson, J. C. (2020). Investigation of the Cellular Destination of Fluorescently Labeled Carbon Nanohorns in Cultured Cells. ACS Applied Bio Materials, 3(10), 6790-6801.
Yaothak, J., Simpson, J., Heffernan, L., Tsai, Y. -S., & Lin, C. -C. (2020). A Semi-Automated 2D Segmentation and Classification System to Quantify and Characterize Morphological Features of Golgi-Derived Membrane Structures. American Journal of Biomedical Engineering, 10(2), 29-43.
Charoux, C. M. G., Patange, A. D., Hinds, L. M., Simpson, J. C., O’Donnell, C. P., & Tiwari, B. K. (2020). Antimicrobial effects of airborne acoustic ultrasound and plasma activated water from cold and thermal plasma systems on biofilms. Scientific Reports, 10(1).
Yaothak, J., Simpson, J. C., Heffernan, L. F., Tsai, Y. S., & Lin, C. C. (2021). Development of a 2D Automated Tracking System to Characterize Golgi-Derived Membrane Tubule Fission and Fusion Dynamics. Journal of Medical and Biological Engineering.
Mysior, M. M., & Simpson, J. C. (2021). Emerging roles for Rho GTPases operating at the Golgi complex. Small GTPases, 12(5-6), 311-322.
Dr Gavin Stewart
Kacprzyk, J., Locatelli, A. G., Hughes, G. M., Huang, Z., Clarke, M., Gorbunova, V., et al. (2021). Evolution of mammalian longevity: age-related increase in autophagy in bats compared to other mammals. Aging, 13(6), 7998-8025.
Jones, A. C., Pinki, F., Stewart, G. S., & Costello, D. A. (2021). Inhibition of Urea Transporter (UT)-B Modulates LPS-Induced Inflammatory Responses in BV2 Microglia and N2a Neuroblastoma Cells. Neurochemical Research, 46(6), 1322-1329.
Professor Emma Teeling
Damas, J., Hughes, G. M., Keough, K. C., Painter, C. A., Persky, N. S., Corbo, M., et al. (2020). Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates. Proceedings of the National Academy of Sciences of the United States of America, 117(36), 22311-22322.
Genereux, D. P., Serres, A., Armstrong, J., Johnson, J., Marinescu, V. D., Murén, E., et al. (2020). A comparative genomics multitool for scientific discovery and conservation. Nature, 587(7833), 240-245.
Gordon, D. E., Hiatt, J., Bouhaddou, M., Rezelj, V. V., Ulferts, S., Braberg, H., et al. (2020). Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.. Science (New York, N.Y.), 370(6521).
Moreno Santillán, D. D., Lama, T. M., Gutierrez Guerrero, Y. T., Brown, A. M., Donat, P., Zhao, H., et al. (2021). Large-scale genome sampling reveals unique immunity and metabolic adaptations in bats. Molecular Ecology.
Kacprzyk, J., Locatelli, A. G., Hughes, G. M., Huang, Z., Clarke, M., Gorbunova, V., et al. (2021). Evolution of mammalian longevity: age-related increase in autophagy in bats compared to other mammals. Aging, 13(6), 7998-8025.
Power, M. L., Foley, N. M., Jones, G., & Teeling, E. C. (2021). Taking flight: An ecological, evolutionary and genomic perspective on bat telomeres. Molecular Ecology.
Huang, Z., & Teeling, E. C. (2021) Bat genomes: unveiling the secrets of their superpowers. TheScienceBreaker, 07(02).
Power, M. L., Power, S., Bertelsen, M. F., Jones, G., & Teeling, E. C. (2021). Wing: A suitable nonlethal tissue type for repeatable and rapid telomere length estimates in bats. Molecular Ecology Resources, 21(2), 421-432.
Rhie, A., McCarthy, S. A., Fedrigo, O., Damas, J., Formenti, G., Koren, S., et al. (2021). Towards complete and error-free genome assemblies of all vertebrate species. Nature, 592(7856), 737-746.
Wang, L. F., Gamage, A. M., Chan, W. O. Y., Hiller, M., & Teeling, E. C. (2021). Decoding bat immunity: the need for a coordinated research approach. Nature Reviews Immunology, 21(5), 269-271.
Vine, C., Teeling, E. C., Smith, M., Corton, C., Oliver, K., Skelton, J., et al. (2021). The genome sequence of the common pipistrelle, Pipistrellus pipistrellus Schreber 1774. Wellcome Open Research, 6, 117.
Rocha, R., Aziz, S. A., Brook, C. E., Carvalho, W. D., Cooper-Bohannon, R., Frick, W. F., et al. (2021). Bat conservation and zoonotic disease risk: a research agenda to prevent misguided persecution in the aftermath of COVID-19. Animal Conservation, 24(3), 303-307.
Dr Hannah White
White, H. J., Gaul, W., Sadykova, D., León-Sánchez, L., Caplat, P., Emmerson, M. C., & Yearsley, J. M. (2020). Quantifying large-scale ecosystem stability with remote sensing data. Remote Sensing in Ecology and Conservation, 6(3), 354-365.
White, H. J., León-Sánchez, L., Burton, V. J., Cameron, E. K., Caruso, T., Cunha, L., et al. (2020). Methods and approaches to advance soil macroecology. Global Ecology and Biogeography, 29(10), 1674-1690.
Assoc Professor Tom Wilkinson
Ellis, E. E., & Wilkinson, T. L. (2021). Moth assemblages within urban domestic gardens respond positively to habitat complexity, but only at a scale that extends beyond the garden boundary. Urban Ecosystems, 24(3), 469-479.
Dr Jonathan Yearsley
White, H. J., Gaul, W., Sadykova, D., León-Sánchez, L., Caplat, P., Emmerson, M. C., & Yearsley, J. M. (2020). Quantifying large-scale ecosystem stability with remote sensing data. Remote Sensing in Ecology and Conservation, 6(3), 354-365.
Yearsley, J. M., Salmanidou, D. M., Carlsson, J., Burns, D., & Van Dover, C. L. (2020). Biophysical models of persistent connectivity and barriers on the northern Mid-Atlantic Ridge. Deep-Sea Research Part II: Topical Studies in Oceanography, 180.
Gaul, W., Sadykova, D., White, H. J., Leon-Sanchez, L., Caplat, P., Emmerson, M. C., & Yearsley, J. M. (2020). Data quantity is more important than its spatial bias for predictive species distribution modelling. PeerJ, 8.
White, H. J., Gaul, W., León-Sánchez, L., Sadykova, D., Emmerson, M. C., Caplat, P., & Yearsley, J. M. (2021). Ecosystem stability at the landscape scale is primarily associated with climatic history. Functional Ecology.

Presentation

Dr Jonathan Yearsley
Yearsley, J., White, H., Leon-Sanchez, L., Gaul, W., Ilic, M., Magilton, M., et al. (2020). The resilience of plant productivity at a landscape scale using remotely-sensed data. Zoom Conference.

Report

Dr Jan-Robert Baars
Kelly-Quinn, M., Baars, J. -R., Kennedy, B., & Igoe, F. (2021). Handbook for Citizen Science Freshwater Biomonitoring in Ireland (Small Stream Impact Score). Private: LAWPRO, EPA.
Dr Grace Cott
Cott, G., Beca-Carretero, P., & Stengel, D. (2021). Blue Carbon and Marine Carbon Sequestration in Irish Waters and Coastal Habitats. https://oar.marine.ie/handle/10793/1685#:~:text=Ireland%20is%20estimated%20to%20store,extent%2C%20productivity%20and%20actual%20contribution.: Marine Institute.
Professor Tasman Crowe
Crowe, T., Giesler, R., Allcock, L., Johnson, M., White, M., Doyle, T., et al. (2020). Expanding Ireland's Marine Protected Area Network. Dublin, Ireland: Department of Housing, Local Government and Heritage.
Assoc Professor Mary Kelly-Quinn
Christie, M., Kenter, J., Bullock, C., Bruen, M., Penk, M., Feld, C., & Kelly-Quinn, M. (2021). ESDecide: from an Ecosystem Services Framework to Application for Integrated Freshwater Resources Management (389). Wexford, Ireland: Environmental Protection Agency.
Dr Shane Mc Guinness
Lusby, J., O'Clery, M., Mc Guinness, S., Tosh, D., & Crowe, O. (2021). The interactions between Barn Owls and major roads: informing management and mitigation. TII Publications reference RE-ENV-07004.. Dublin: Transport Infrastructure Ireland.
Dr Florence Renou-Wilson
Renou-Wilson, F., Pschenyckyj, C., Riondato, E., Wilson, D., Flood, K., & O'Driscoll, C. (2021). Optimising Water Quality Returns from Peatland Management while Delivering Co-Benefits for Climate and Biodiversity. http://scholar.google.com/scholar_url?url=https://www.thewaterforum.ie/app/uploads/2021/03/Peatlands_Full_Report_Final_Feb2021.pdf&hl=en&sa=X&d=13468442653136931872&ei=KspMYK3SBs-KywSQ8IWYBg&scisig=AAGBfm3bXeuAjCB_rj8CrZl6n3UJBN5I4w&nossl=1&oi=scholaralrt&hist=HF8yhZwAAAAJ:11586748973533029188:AAGBfm1lryzrXzoyTbiEN8CYzCDq2d-Nyg&html=&folt=cit&fols=: National Water Forum.

UCD Biology & Environmental Science

UCD School of Biology and Environmental Science - Research Publications 2020/2021

UCD Biology & Environmental Science

UCD School of Biology and Environmental Science - Research Publications 2020/2021

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