Conway Institute | UCD Research.

Book

Professor Sabine Koelle
Björndahl, L., Flanagan, J., Holmberg, R., & Kvist, U. (2021). XIIIth International Symposium on Spermatology. Springer.
Dr Arun Kumar
Poduri, R. (2020). Drug Discovery and Development From Targets and Molecules to Medicine. Springer.

Chapter

Assoc Professor Marguerite Clyne
Clyne, M., Dunne, C., & Dolan, B. (2021). Investigating the Interaction of Helicobacter pylori with the Gastric Mucosa.. In S. Smith (Ed.), Helicobacter Pylori. Methods in Molecular Biology (pp. 153-173). New York: Humana Press. doi:10.1007/978-1-0716-1302-3_15
Professor Kenneth Dawson
Lynch, I., & Dawson, K. A. (2020). Protein–Nanoparticle Interactions. In Nano-Enabled Medical Applications (pp. 231-250). Jenny Stanford Publishing. doi:10.1201/9780429399039-8
Monopoli, M. P., Aberg, C., Salvati, A., & Dawson, K. A. (2020). Biomolecular Coronas Provide the Biological Identity of Nanosized Materials. In Nano-Enabled Medical Applications (pp. 205-229). Jenny Stanford Publishing. doi:10.1201/9780429399039-7
Dawson, K. A. (2021). The evolution of nanoscale research: Lessons learned and questions asked. In Ethics in Nanotechnology: Emerging Technologies Aspects (pp. 93-118). doi:10.1515/9783110701883-006
Dawson, K. A. (2021). 6 The evolution of nanoscale research: Lessons learned and questions asked. In Ethics in Nanotechnology (pp. 93-118). De Gruyter. doi:10.1515/9783110701883-006
De Gregorio, P., Lawlor, A., & Dawson, K. A. (2021). Bootstrap Percolation. In Complex Media and Percolation Theory (pp. 149-173). Springer US. doi:10.1007/978-1-0716-1457-0_41
Professor William Gallagher
Jordan, A. C., Prencipe, M., Silva, R., Gallagher, W. M., & Perry, A. S. (2021). Epigenetics and precision medicine in prostate cancer. In Epigenetics in Precision Medicine (pp. 69-108). doi:10.1016/B978-0-12-823008-4.00008-1
Dr Jeffrey Glennon
Glennon, J. (2021). Amitriptyline. In Encyclopedia of Autism Spectrum Disorders (pp. 187-190). Springer International Publishing. doi:10.1007/978-3-319-91280-6_1748
Glennon, J. (2021). Lithium. In Encyclopedia of Autism Spectrum Disorders (pp. 2727-2731). Springer International Publishing. doi:10.1007/978-3-319-91280-6_59
Glennon, J. (2021). Sedative Hypnotic Drugs. In Encyclopedia of Autism Spectrum Disorders (pp. 4117-4120). Springer International Publishing. doi:10.1007/978-3-319-91280-6_1754
Professor Catherine Godson
Doyle, R., & Godson, C. (2021). Endogenous antiinflammatory and proresolving lipid mediators in renal disease. In Regenerative Nephrology (pp. 55-67). doi:10.1016/B978-0-12-823318-4.00009-3
Professor Aoife Gowen
Ishikawa, D., Ishigaki, M., & Gowen, A. A. (2021). NIR Imaging. In Near-Infrared Spectroscopy (pp. 517-551). Springer Singapore. doi:10.1007/978-981-15-8648-4_22
Gowen, A. A. (2021). NIR Hyperspectral Imaging. In Handbook of Near-Infrared Analysis (pp. 125-144). CRC Press. doi:10.1201/b22513-9
Dr Rory Johnson
Carbonell Sala, S., Uszczynska-Ratajczak, B., Lagarde, J., Johnson, R., & Guigó, R. (2021). Annotation of Full-Length Long Noncoding RNAs with Capture Long-Read Sequencing (CLS). In Methods in Molecular Biology (Vol. 2254, pp. 133-159). doi:10.1007/978-1-0716-1158-6_9
Professor Walter Kolch
Heidecker, G., Cleveland, J. L., Beck, T., Huleihel, M., Kolch, W., Storm, S. M., & Rapp, U. R. (2020). Role of raf and myc Oncogenes in Signal Transduction. In Genes and Signal Transduction in Multistage Carcinogenesis (pp. 339-374). CRC Press. doi:10.1201/9781003066101-19
Dr Arun Kumar
Kumar, A. H. S. (2021). Discovery and Development of Stem Cells for Therapeutic Applications. In Drug Discovery and Development (pp. 267-296). Springer Singapore. doi:10.1007/978-981-15-5534-3_10
Professor Carel Le Roux
Sudlow, A. C., Pournaras, D. J., & le Roux, C. W. (2021). Other Potential Benefits of the Sleeve: Effects on Body Fat Setpoint. In Laparoscopic Sleeve Gastrectomy (pp. 393-401). Springer International Publishing. doi:10.1007/978-3-030-57373-7_38
Professor Grace Mulcahy
Donnelly, S., Flynn, R., Mulcahy, G., & O’Neill, S. (2021). Immunological Interaction Between Fasciola and its Host. In Fasciolosis II (pp. 278-307). doi:10.1079/9781789246162.0009
Assoc Professor David O'Connell
Lynch, C., Jordan, L., & J O’ Connell, D. (2021). Redesigning Spent Media from Cell Culture Bioprocess to Feed New Bacterial Fermentations. In Cell Engineering (pp. 129-146). Springer International Publishing. doi:10.1007/978-3-030-79871-0_5
Professor Kevin O'Connor
Rich, M. H., O'Connor, K. E., & Narancic, T. (2021). Non-canonical (unusual) amino acids as a toolbox for antimicrobial and anticancer peptide synthesis. In Unknown Book (Vol. 43, pp. 44-63). doi:10.1039/9781788017008-00044
Professor Stefan Oscarson
Oscarson, S., & Cheallaigh, A. N. (2021). Strategies in Oligosaccharide Synthesis. In Comprehensive Glycoscience: Second Edition (pp. 1-48). doi:10.1016/B978-0-12-819475-1.00075-4
Assoc Professor Antoinette Perry
Jordan, A. C., Prencipe, M., Silva, R., Gallagher, W. M., & Perry, A. S. (2021). Epigenetics and precision medicine in prostate cancer. In Epigenetics in Precision Medicine (pp. 69-108). doi:10.1016/B978-0-12-823008-4.00008-1
Dr Maria Prencipe
Jordan, A. C., Prencipe, M., Silva, R., Gallagher, W. M., & Perry, A. S. (2021). Epigenetics and precision medicine in prostate cancer. In Epigenetics in Precision Medicine (pp. 69-108). doi:10.1016/B978-0-12-823008-4.00008-1
Professor Prem Puri
Feng, X., Puri, P., & Lacher, M. (2021). Vesicoureteral Reflux (VUR). In Pearls and Tricks in Pediatric Surgery (pp. 331-338). Springer International Publishing. doi:10.1007/978-3-030-51067-1_48
Hajduk, P., Nakamura, H., Ryan, S., & Puri, P. (2021). Fetal and Birth Trauma. In Pediatric Surgery (pp. 453-471). Springer Berlin Heidelberg. doi:10.1007/978-3-662-43559-5_138
Dr Emmanuel Reynaud
Glaser, A., & Reynaud, E. G. (2022). Light sheet fluorescence microscopy. In Imaging Modalities for Biological and Preclinical Research: A Compendium, Volume 1: Part I: Ex vivo biological imaging. IOP Publishing. doi:10.1088/978-0-7503-3059-6ch7
Dr Clare Reynolds
Reynolds, C. M., Bridge-Comer, P. E., & Vickers, M. H. (2021). Chapter 2: Maternal Nutrition and the Risk of Obesity and Diabetes in the Offspring. In Food Chemistry, Function and Analysis (Vol. 2021-January). doi:10.1039/9781839160608-00024

Conference Paper

Dr Carol Aherne
O Connell, L., Olli, K., Wilkinson, C., Collins, C., Jedlicka, P., & Aherne, C. (2021). P060 A2B adenosine receptor deficiency ameliorates chronic murine Crohn’s-like-ileitis. In Journal of Crohn's and Colitis Vol. 15 (pp. S166-S167). Oxford University Press (OUP). doi:10.1093/ecco-jcc/jjab076.189
Assoc Professor John Baugh
McDonald, K., Glezeva, N., Collier, P., O’Reilly, J., O’Connell, E., Tea, I., et al. (2020). Tetranectin, a potential novel diagnostic biomarker of heart failure, is expressed within the myocardium and associates with cardiac fibrosis. In Scientific Reports Vol. 10. doi:10.1038/s41598-020-64558-4
Dr Gary Brennan
Brennan, G. P., Bauer, S., Engel, T., Jimenez-Mateos, E. M., Del Gallo, F., Hill, T. D. M., et al. (2020). Genome-wide microRNA profiling of plasma from three different animal models identifies biomarkers of temporal lobe epilepsy. In Neurobiology of Disease Vol. 144. doi:10.1016/j.nbd.2020.105048
Professor Lorraine Brennan
Yin, X., Prendiville, O., McNamara, A., & Brennan, L. (2021). A targeted metabolomic approach to assess the reproducibility of plasma metabolites over a four-month period. In Proceedings of the Nutrition Society Vol. 80. Cambridge University Press (CUP). doi:10.1017/s0029665121002275
Assoc Professor Marguerite Clyne
Carney, G., Clyne, M., & Ó'Cróinín, T. (2021). Assessing antibiotic resistance and survival under aerobic stress within a panel of freshly isolated strains of Campylobacter. In Annual Conference of Microbiology Society 2021.
Dr Derek Costello
BNA 2017 Festival of Neuroscience: Abstract Book (2017). In Brain and Neuroscience Advances Vol. 1 (pp. 239821281770527). SAGE Publications. doi:10.1177/2398212817705279
Professor Guenther Eissner
Smith, L., Gatault, S., Casals-Diaz, L., Metais, C., Kelly, P., Knaus, U., et al. (2021). MICE OVEREXPRESSING PROTEASE-ACTIVATED RECEPTOR-2 DEVELOP SPONTANEOUS ATOPIC DERMATITIS: IMMUNOTYPIC CHARACTERIZATION. In ACTA DERMATO-VENEREOLOGICA Vol. 101 (pp. 43-44). ACTA DERMATO-VENEREOLOGICA.
Dr Antonio Garzon Vico
Garzon-Vico, A., Krastev, D., & Rosier, J. A. (2021). Individuals and Absorptive Capacity: A Supervenient Model. In Academy of Management Proceedings Vol. 2021 (pp. 13177). Academy of Management. doi:10.5465/ambpp.2021.13177abstract
Dr Jeffrey Glennon
Cornila, I., & Glennon, J. C. (2021). PATHWAY ANALYSIS OF SPLICE VARIANTS SUGGEST A ROLE FOR INFLAMMATORY PROCESSES IN TYPE 1 MYOTONIC DYSTROPHY. In IRISH JOURNAL OF MEDICAL SCIENCE Vol. 190 (pp. S136).
Professor Aoife Gowen
Polder, G., & Gowen, A. (2022). The hype in spectral imaging. In Spectroscopy Europe (pp. 12). IM Publications Open LLP. doi:10.1255/sew.2021.a12
Dr Melinda Halasz
Regan, M., Aziz, A. A. A., & Halasz, M. (2021). DIFFERENTIAL (PHOSPHO-) PROTEOMICS TO STUDY THE MECHANISM - OF - ACTION OF DIPHENYLENIODONIUM CHLORIDE (DPI) IN MYCN-AMPLIFIED NEUROBLASTOMA. In IRISH JOURNAL OF MEDICAL SCIENCE Vol. 190 (pp. S126-S127). SPRINGER LONDON LTD.
Evans, S., Goh, C. Y., Halasz, M., Lindsay., Dowling, P., Howard, J., et al. (2021). EXTRACELLULAR VESICLES IDENTIFIED IN PATIENTS WITH TRIPLE NEGATIVE BREAST CANCER REVEAL POTENTIAL RECURRENCE RISK SURVIVAL SIGNATURES. In IRISH JOURNAL OF MEDICAL SCIENCE Vol. 190 (pp. S150). SPRINGER LONDON LTD.
Professor Breandán Kennedy
Moran, A., O'Brien, J., & Kennedy, B. (2021). UCD inherited blindness summer school 2021. In BRITISH JOURNAL OF PHARMACOLOGY Vol. 178 (pp. 4995).
Doherty, H., O'Brien, J., Clarke, L., Sundaramurthi, H., Campiani, G., & Kennedy, B. (2021). Identifying novel HDAC6 inhibitors as vision restoring drugs in atp6v0e1(ucd6) zebrafish models of inherited blindness. In BRITISH JOURNAL OF PHARMACOLOGY Vol. 178 (pp. 4987).
Messina, F., Perpetuini, A. C., Sundaramurthi, H., Moran, A., English, M., Brooks, M., et al. (2021). Evaluation of the neuroprotective mechanisms of 7,8-Dihydroxyflavone and generation of corresponding sustained release nano/microparticles for improved ocular drug delivery. In INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE Vol. 62.
Gomez Sanchez, A., Colligris, B., Teruel, Y. A., & Kennedy, B. N. (2021). Effects of cigarette smoke extract on the zebrafish visual system. In INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE Vol. 62.
Moran, A., Carter, S. P., Kaylor, J. J., Radu, R. A., Sanchez, A. G., Travis, G. H., et al. (2021). Deciphering the role of Rab28 in cone vision and outer segment phagocytosis. In INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE Vol. 62.
Sundaramurthi, H., Mulero, S., Buckley, M., Piulats, J., & Kennedy, B. (2021). Evaluation of Anti-Cancer Properties of Selective Histone Deacetylase 6 Inhibitors in Uveal Melanoma. In INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE Vol. 62.
O'Brien, J., Perpetuini, A. C., Scoffin, R., & Kennedy, B. (2021). Uncovering novel drugs that restore vision by combining biological and computational drug discovery processes. In BRITISH JOURNAL OF PHARMACOLOGY Vol. 178 (pp. 4985).
O'Brien, L., Perpetuini, A., Scoffin, R., & Kennedy, B. (2021). Uncovering novel drugs that restore vision by combining biological and computational drug discovery processes. In INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE Vol. 62.
Pendino, M., Mulero, S. G., Pamplona, R. S., Marcone, S., Slater, K., Piulats, J., & Kennedy, B. N. (2021). Evaluating the cannabinoid receptor 1 (CB1) as a therapeutic target for uveal melanoma. In BRITISH JOURNAL OF PHARMACOLOGY Vol. 178 (pp. 4939).
Slater, K., Bosch, R., Villanueva, A., Coupland, S., Horgan, N., Piulats, J., & Kennedy, B. (2021). High expression of CysLT(1) is associated with poor survival in UM patients and antagonists alter the secretion of pro-inflammatory factors in patient samples. In BRITISH JOURNAL OF PHARMACOLOGY Vol. 178 (pp. 4984-4985).
Sundaramurthi, H., Mulero, S. G., Piulats, J., Watson, W., Tobin, D., & Kennedy, B. (2021). Selective histone deacetylase 6 inhibitors as a potential therapeutic option for metastatic uveal melanoma. In BRITISH JOURNAL OF PHARMACOLOGY Vol. 178 (pp. 4982-4983).
Professor Ulla Knaus
Peñuelas-Haro, I., Bertran, E., Crosas-Molist, E., Santacatterina, F., Sebastian, D., Marin, S., et al. (2021). The NADPH oxidase NOX4 regulates metabolism in hepatocellular carcinoma cells. In Free Radical Biology and Medicine Vol. 165 (pp. 24). Elsevier BV. doi:10.1016/j.freeradbiomed.2020.12.315
Knaus, U. G. (2021). NADPH oxidases in infection and inflammation. In FEBS OPEN BIO Vol. 11 (pp. 60). WILEY.
Professor Walter Kolch
Hambly, R., Gatault, S., Martinez, L. I., Kearns, S., Rea, H., Marasigan, V., et al. (2021). Identification of critical mediators and pathways in patients with hidradenitis suppurativa. In EXPERIMENTAL DERMATOLOGY Vol. 30 (pp. 59). WILEY.
Hambly, R., Gatault, S., Martinez, L. I., Kearns, S., Rea, H., Marasigan, V., et al. (2021). Use of omics technology for the identification of critical mediators and pathways in patients with hidradenitis suppurativa. In BRITISH JOURNAL OF DERMATOLOGY Vol. 185 (pp. 39-40). WILEY.
Dr Arun Kumar
LaManna, S., Kilroy, D., & Kumar, A. (2021). COMPARATIVE ANALYSIS OF RODENT AND PORCINE MODELS OF MYOCARDIAL INFARCTION. In IRISH JOURNAL OF MEDICAL SCIENCE Vol. 190 (pp. S147).
Zhang, H., Kilroy, D., & Kumar, A. H. (2021). DO DOGS GET OSTEOPOROSIS? A STUDY OF CT IMAGES OF THE CANINE PELVIS. In IRISH JOURNAL OF MEDICAL SCIENCE Vol. 190 (pp. S131-S132).
Sahyoun, F., Kilroy, D., & Kumar, A. H. (2021). ANALYSINGTHEMERIT OF IRIS-PUPPILARYRATIO AS A NON- INVASIVE INDEX FOR STRESS IN WILD POPULATION OF TIGERS (PANTHERA TIGRIS). In IRISH JOURNAL OF MEDICAL SCIENCE Vol. 190 (pp. S146).
Zhang, H., Kumar, A., & Kilroy, D. (2021). Do dogs get osteoporosis? A study of CT images of the canine pelvis. In JOURNAL OF ANATOMY Vol. 239 (pp. 967).
Al-Kabi, A., & Kumar, A. H. S. (2021). NETWORK ANALYSIS OF SIMVASTATIN TARGETS ON VASCULAR SMOOTH MUSCLE CELLS AND MYELOID CELLS. In IRISH JOURNAL OF MEDICAL SCIENCE Vol. 190 (pp. S130).
Khosravi, Z., & Kumar, A. (2021). A REVIEW OF PHYTOCHEMICALS FOUND IN VARIOUS PARTS OF CALOTROPIS GIGANTEA. In IRISH JOURNAL OF MEDICAL SCIENCE Vol. 190 (pp. S147-S148).
Kilroy, W., & Kumar, A. (2021). Comparative analysis of rodent and porcine models of myocardial infarction. In Journal of Anatomy Vol. 239 (pp. 35-36). Newcastle, UK: Wiley-Blackwell. doi:10.1111/joa.13460
Professor Fionnuala McAuliffe
Du, Y., Mehegan, J., McAuliffe, F. M., & Mooney, C. (2020). Prediction of Large for Gestational Age Infants in Overweight and Obese Women at Approximately 20 Gestational Weeks. In Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2020. doi:10.1145/3388440.3414906
Mensink-Bout, R., Van Meel, E. R., De Jongste, J. C., Annesi-Maesano, I., Aubert, A. M., Bernard, J. Y., et al. (2020). Pro-inflammatory and low quality maternal diet in pregnancy and the risk of childhood lower lung function and asthma: a meta-analysis of 18,000 children. In Paediatric respiratory epidemiology. European Respiratory Society. doi:10.1183/13993003.congress-2020.4984
Killeen, S. L., Byrne, D., O'Reilly, S. L., Geraghty, A. A., Yelverton, C., Saldova, R., et al. (2021). Priorities for Preconception Health and Obesity from the Perspective of Women: A Mixed Methods Study. In ANNALS OF NUTRITION AND METABOLISM Vol. 77 (pp. 363).
Forde, H., Crowley, R., McKenna, M., Kilbane, M., Conway, M., McDonnell, C., et al. (2021). No effect of calcium and vitamin D intake on maternal blood pressure in a healthy population.. In IRISH JOURNAL OF MEDICAL SCIENCE Vol. 190 (pp. 112).
Killeen, L. S., Byrne, D. F., Geraghty, A. A., Kilbane, M. T., Twoney, P. J., McKenna, M. J., et al. (2021). Association of inflammation with obesity phenotype and biochemical health markers in women. In BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY Vol. 128 (pp. 182).
Yelverton, C., Rafferty, A., Moore, R., Byrne, D., Mehegan, J., Cotter, P., et al. (2021). Nutrients of importance for well-being during pregnancy using large observational cohort data. In BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY Vol. 128 (pp. 176-177).
Kennelly, M. A., Killeen, S. L., Philips, C. M., Ainscough, K., Alberdi, G., Lindsay, K. L., et al. (2021). Maternal inflammation, maternal and fetal metabolism, pregnancy outcomes and an antenatal healthy lifestyle intervention. In AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY Vol. 224 (pp. S278).
Du, Y., Rafferty, A. R., McAuliffe, F. M., & Mooney, C. (2021). Explaining large-for-gestational-age births: A random forest classifier with a novel local interpretation method. In Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2021. doi:10.1145/3459930.3469493
Worrrall, A. P., Cunningham, O., Jackson, V., Lawless, M., Murphy, S., O'Connell, M. P., et al. (2021). Demographics and outcomes of syphilis seropositive pregnant women and infants in three Irish maternity hospitals. In AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY Vol. 224 (pp. S272). MOSBY-ELSEVIER.
Start, A. O., Ryan, G., McParland, P., Crimmins, D., Caird, J., & Mcauliffe, F. M. (2021). Severe ventriculomegaly: fetal morbidity and mortality and cesarean delivery rates. In AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY Vol. 224 (pp. S275). MOSBY-ELSEVIER.
Greene, E. M., O'Brien, E. C., Kennelly, M. A., O'Brien, O. A., Lindsay, K. L., & McAuliffe, F. M. (2021). Acceptability of the pregnancy, exercise, and nutrition research study with smartphone app support (PEARS) and the use of mobile health in a mixed lifestyle intervention by pregnant obese and overweight women: Secondary analysis of a randomized controlled trial. In JMIR mHealth and uHealth Vol. 9. doi:10.2196/17189
O'Reilly, S. L., O'Brien, E. C., McGuinness, D., Mehegan, J., Coughlan, B., O'Brien, D., et al. (2021). Latch On: A protocol for a multi-centre, randomised controlled trial of perinatal support to improve breastfeeding outcomes in women with a raised BMI. In Contemporary Clinical Trials Communications Vol. 22. doi:10.1016/j.conctc.2021.100767
Kovacs, Z., Adamczyk, B., Reidy, F., McAuliffe, F. M., Rudd, P. M., Wingfield, M., et al. (2021). Novel non-invasive diagnostic options for endometriosis based on glycome analysis. In HUMAN REPRODUCTION Vol. 36 (pp. 291). OXFORD UNIV PRESS.
Professor Amanda McCann
Bhardwaj, N., Fox, P., Frazer, K., McCann, A., Lyons, A., Doherty, K., & Fitzpatrick, P. (2021). Five-year trend of smoking prevalence among cancer patients in Ireland.. In Faculty of Public Health Medicine, RCPI Scientific Meeting.
Bhardwaj, N., Lyons, A., Frazer, K., Fox, P., McCann, A., Doherty, K., & Fitzpatrick, P. (2021). Prevalence of smoking among discharged cancer patients in Ireland: 5-year trend analysis.. In Smoking Cessation and Health Conference, UK June 2021.
Gordon, A., Hope, T., She, E. N., Staunton, M., McCann, A., & Quinn, E. (2021). DESIGNING AN E-HEALTH PORTAL FOR THE PATIENT VOICE IN CANCER RESEARCH TO PROMOTE PUBLIC AND PATIENT INVOLVEMENT IN RESEARCH ACROSS ACADEMIC AND PATIENT COMMUNITIES. In IRISH JOURNAL OF MEDICAL SCIENCE Vol. 190 (pp. S150). SPRINGER LONDON LTD.
Evans, S., Goh, C. Y., Halasz, M., Lindsay., Dowling, P., Howard, J., et al. (2021). EXTRACELLULAR VESICLES IDENTIFIED IN PATIENTS WITH TRIPLE NEGATIVE BREAST CANCER REVEAL POTENTIAL RECURRENCE RISK SURVIVAL SIGNATURES. In IRISH JOURNAL OF MEDICAL SCIENCE Vol. 190 (pp. S150). SPRINGER LONDON LTD.
Professor Paul McLoughlin
Mccormack, E. E., Curley, G. F., Redmond, K., & McLoughlin, P. (2021). A Novel High Viscosity Perfusion Solution Protects Against Oedema Formation in Ex Vivo Lung Perfusion for Lung Transplant; a Preclinical Study. In TP23. TP023 LUNG TRANSPLANT: OUTCOME PREDICTORS AND THERAPEUTIC OPTIONS. American Thoracic Society. doi:10.1164/ajrccm-conference.2021.203.1_meetingabstracts.a1784
Walsh, D., Boylan, J. F., & McLoughlin, P. (2021). Impact of the Viscosity of Intravenous Fluid on Endothelial Integrity and Edema Formation in an Isolated Mouse Lung Model of Endothelial Injury. In TP56. TP056 NONPULMONARY CRITICAL CARE AND LUNG INFECTION. American Thoracic Society. doi:10.1164/ajrccm-conference.2021.203.1_meetingabstracts.a2875
Kostyunina, D., Dillon, E., Rochfort, K. D., Cummins, P. M., & McLoughlin, P. (2021). Proteomic Analysis Reveals Different Responses to Hypoxia in Male and Female Human Pulmonary Microvascular Endothelial Cells. In TP83. TP083 HEY JUDE - NOVEL FINDINGS FROM OMIC AND BIOINFORMATIC APPROACHES IN PULMONARY HYPERTENSION. American Thoracic Society. doi:10.1164/ajrccm-conference.2021.203.1_meetingabstracts.a3622
Professor Niamh Nowlan
Ghosh, A. K., Balasubramanian, S., Devasahayam, S., Vaidyanathan, R., Cherian, A., Prasad, J., & Nowlan, N. C. (2020). Detection and Analysis of Fetal Movements Using an Acoustic Sensor-based Wearable Monitor. In Proceedings - 2020 7th International Conference on Information Science and Control Engineering, ICISCE 2020 (pp. 512-516). doi:10.1109/ICISCE50968.2020.00113
Assoc Professor Eoin O'Cearbhaill
Karam, A., Conroy, E., Rainford, L., & O'Cearbhaill, E. (2021). DEVELOPMENT OF A 3D PRINTABLE HOLDER FOR DIGITAL RADIOGRAPHY DETECTORS. In IRISH JOURNAL OF MEDICAL SCIENCE Vol. 190 (pp. S141).
Le Chevillier, A., Marques, D. R., Mooney, N., Walsh, E., O'Cearbhaill, E. D., Black, A., et al. (2021). A combined electrospinning and melt electrowriting approach to fabricate stented paediatric tissue-engineered heart valves. In JOURNAL OF ANATOMY Vol. 239 (pp. 953-954).
Levey, R. E., Coulter, F. B., Robinson, S. T., Ghersi, G., Dockery, P., O'Cearbhaill, E. D., & Duffy, G. P. (2021). Additive Manufactured Macroencapsulation Devices for Islet Cell Replacement Therapy. In TRANSPLANTATION Vol. 105 (pp. S45).
Professor John O'Connor
O'Connor, J., Puzio, M., & Moreton, N. (2020). The prolyl hydroxylase inhibitor, dimethyloxalylglycine (DMOG), attenuates the effects of 15 min oxygen glucose deprivation (OGD) and 20 min hypoxia on synaptic transmission in isolated rat hippocampal slices.. In Neuroscience Ireland Young Symposium. On line: Neuroscience Ireland.
O'Connor, J., & Puzio, M. (2021). The nonspecific prolyl hydroxylase inhibitor, dimethyloxaloylglycine (DMOG), rescues synaptic transmission in an in vitro OGD model in rat hippocampus.. In Irish Journal of Medical Science Vol. 190 (pp. 1-2). on line: Springer.
O'Connor, J., & Moreton, N. (2021). The effects of dimethyloxalylglycine, MnTMPyP and hypoxia on synaptic transmission in isolated rat hippocampal slices.. In Irish Journal of Medical Science Vol. 190 (pp. 1-2). Online: Springer.
O'Connor, J., & Puzio, M. (2021). The effects of the nonspecific prolyl hydroxylase inhibitor, dimethyloxaloylglycine (DMOG) on synaptic transmission and plasticity in rat hippocampal slices. In The BRAIN Conference.
O'Connor, J., & Moreton, N. (2021). The modulatory effects of dimethyloxalylglycine and MnTMPyP on synaptic transmission post hypoxia in isolated rat hippocampal slices.. In The BRAIN Conference. Online.
Dr Tadhg Ó'Cróinín
Carney, G., Clyne, M., & Ó'Cróinín, T. (2021). Assessing antibiotic resistance and survival under aerobic stress within a panel of freshly isolated strains of Campylobacter. In Annual Conference of Microbiology Society 2021.
Dr Alison Reynolds
Reynolds, A., & Obaseki, S. (2021). In populations who use Hydroxychloroquine and Chloroquine what is the prevalence and risk of adverse effects such as retinopathies? A systematic Review.. In BRITISH JOURNAL OF PHARMACOLOGY Vol. 178 (pp. 392).
Messina, F., Perpetuini, A. C., Sundaramurthi, H., Moran, A., English, M., Brooks, M., et al. (2021). Evaluation of the neuroprotective mechanisms of 7,8-Dihydroxyflavone and generation of corresponding sustained release nano/microparticles for improved ocular drug delivery. In INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE Vol. 62.
Dr Clare Reynolds
Bridge-Comer, P. E., Vickers, M. H., & Reynolds, C. M. (2021). Supplementation of a high-fat diet with acesulfame-k results in sex-specific effects on insulin concentrations and adipose tissue morphology and gene expression in C57BL6 mice. In Proceedings of the Nutrition Society Vol. 80. Cambridge University Press (CUP). doi:10.1017/s0029665121002226
Dr Stephen Thorpe
Glynn, C., & Thorpe, S. D. (2021). DIFFERENTIATION LINEAGE ALTERS THE CYTOSKELETAL AND EPIGENETIC RESPONSE OF MESENCHYMAL STEM CELLS TO TENSILE STRAIN. In IRISH JOURNAL OF MEDICAL SCIENCE Vol. 190 (pp. S141-S142).
Chiam, K. N., Krstic, A., & Thorpe, S. D. (2021). ANALYSIS OF RETINOIC ACID RECEPTOR GENE REGULATION IN A METASTATIC PANCREATIC CANCER CELL LINE. In IRISH JOURNAL OF MEDICAL SCIENCE Vol. 190 (pp. S137-S138).
Quirke, N., MacCurtain, B., Gallagher, T., & Thorpe, S. (2021). PDAC MECHANOBIOLOGY; INFLUENCE ON DISEASE PROGRESSION AND MECHANOTHERAPEUTICS. In IRISH JOURNAL OF MEDICAL SCIENCE Vol. 190 (pp. S137).
Professor Douglas Veale
Floudas, A., Neto, N., Orr, C., Canavan, M., Gallagher, P., Hurson, C., et al. (2021). Loss of Balance Between Protective and Pro-inflammatory Synovial Tissue T Cell Polyfunctionality Predates Clinical Onset of Rheumatoid Arthritis. In ARTHRITIS & RHEUMATOLOGY Vol. 73 (pp. 2024-2026).
Marzaioli, V., Canavan, M., Floudas, A., Flynn, K., Mullan, R., Veale, D., & Fearon, U. (2021). CD209/CD14(+) Dendritic Cells Characterization in Rheumatoid and Psoriatic Arthritis Patients: Activation, Synovial Infiltration and Therapeutic Targeting. In ARTHRITIS & RHEUMATOLOGY Vol. 73 (pp. 2097-2098).
Floudas, A., Neto, N., Orr, C., Canavan, M., Gallagher, P., Hurson, C., et al. (2021). Loss of balance between protective and pro-inflammatory synovial tissue T-cell polyfunctionality predates clinical onset of Rheumatoid Arthritis. In EUROPEAN JOURNAL OF IMMUNOLOGY Vol. 51 (pp. 133).

Internet publication

Dr Emmanuel Reynaud
Reynaud, E., & Kugler, E. (2020). LSFM series – Surfing on the data freak wave! PART I: Knowing your turf, knowing your surf!. The Company of Biologists. Retrieved from https://focalplane.biologists.com/2020/09/05/lsfm-series-part1/
Reynaud, E., & Kugler, E. (2020). LSFM series – Surfing on the data freak wave! Part II: Before imaging: Know your sample (geometry).
Reynaud, E., & Kugler, E. (2020). LSFM series – Part III: Image acquisition: Calibration and acquisition.
Reynaud, E., & Kugler, E. (2021). LSFM series – Part IV: Data post-processing: Cropping, tailoring, and trimming. Retrieved from https://focalplane.biologists.com/
Reynaud, E., & Kugler, E. (2021). LSFM series – Part V: Part V The future: The hope of smart microscopes and phantoms. The company of biologists - Focal Plane. Retrieved from https://focalplane.biologists.com/2021/04/24/lsfm-series-partv-the-future/

Journal article

Dr Carol Aherne
Olli, K. E., Rapp, C., Connell, L. O., Collins, C. B., McNamee, E. N., Jensen, O., et al. (2020). Muc5ac expression protects the colonic barrier in experimental colitis. Inflammatory Bowel Diseases, 26(9), 1353-1367. doi:10.1093/ibd/izaa064
O'Connell, L., Winter, D. C., & Aherne, C. M. (2021). The Role of Organoids as a Novel Platform for Modeling of Inflammatory Bowel Disease. Frontiers in Pediatrics, 9. doi:10.3389/fped.2021.624045
Professor Pietro Ballone
Gobbo, D., Ballone, P., & Garabato, B. D. (2020). Coarse-Grained Model of Entropy-Driven Demixing. Journal of Physical Chemistry B, 124(41), 9267-9274. doi:10.1021/acs.jpcb.0c07575
Kumari, P., Pillai, V. V. S., Gobbo, D., Ballone, P., & Benedetto, A. (2021). The transition from salt-in-water to water-in-salt nanostructures in water solutions of organic ionic liquids relevant for biological applications. Physical Chemistry Chemical Physics, 23(2), 944-959. doi:10.1039/d0cp04959j
Gobbo, D., Cavalli, A., Ballone, P., & Benedetto, A. (2021). Computational analysis of the effect of [Tea][Ms] and [Tea][H<inf>2</inf>PO<inf>4</inf>] ionic liquids on the structure and stability of Aß(17-42) amyloid fibrils. Physical Chemistry Chemical Physics, 23(11), 6695-6709. doi:10.1039/d0cp06434c
Assoc Professor John Baugh
Tonry, C., McDonald, K., Ledwidge, M., Herandez, B., Glezeva, N., Rooney, C., et al. (2020). 40 A protein biomarker model for detection of cardiac arrhythmia and prediction of associated heart failure. General poster session. doi:10.1136/heartjnl-2020-ics.40
Pakhomov, N., & Baugh, J. A. (2021). The role of diet-derived short-chain fatty acids in regulating cardiac pressure overload. American Journal of Physiology - Heart and Circulatory Physiology, 320(2), H475-H486. doi:10.1152/AJPHEART.00573.2020
Tonry, C., McDonald, K., Ledwidge, M., Hernandez, B., Glezeva, N., Rooney, C., et al. (2021). Multiplexed measurement of candidate blood protein biomarkers of heart failure. ESC Heart Failure, 8(3), 2248-2258. doi:10.1002/ehf2.13320
Russell-Hallinan, A., Neary, R., Watson, C. J., & Baugh, J. A. (2021). Repurposing From Oncology to Cardiology: Low-Dose 5-Azacytidine Attenuates Pathological Cardiac Remodeling in Response to Pressure Overload Injury. Journal of Cardiovascular Pharmacology and Therapeutics, 26(4), 375-385. doi:10.1177/1074248420979235
Professor Orina Belton
Fitzsimons, S., Oggero, S., Bruen, R., McCarthy, C., Strowitzki, M. J., Mahon, N. G., et al. (2020). microRNA-155 Is Decreased During Atherosclerosis Regression and Is Increased in Urinary Extracellular Vesicles During Atherosclerosis Progression. Frontiers in Immunology, 11. doi:10.3389/fimmu.2020.576516
Oggero, S., de Gaetano, M., Marcone, S., Fitzsimons, S., Pinto, A. L., Ikramova, D., et al. (2021). Extracellular vesicles from monocyte/platelet aggregates modulate human atherosclerotic plaque reactivity. Journal of Extracellular Vesicles, 10(6). doi:10.1002/jev2.12084

Dr Antonio Benedetto
Kumari, P., Pillai, V. V. S., Rodriguez, B. J., Prencipe, M., & Benedetto, A. (2020). Sub-toxic concentrations of ionic liquids enhance cell migration by reducing the elasticity of the cellular lipid membrane. Journal of Physical Chemistry Letters, 11(17), 7327-7333. doi:10.1021/acs.jpclett.0c02149
Benedetto, A. (2020). From protein and its hydration water dynamics to controlling mechano-elasticity of cellular lipid membranes and cell migration via ionic liquids. Biophysical Reviews, 12(5), 1111-1115. doi:10.1007/s12551-020-00755-9
Kumari, P., Pillai, V. V. S., & Benedetto, A. (2020). Mechanisms of action of ionic liquids on living cells: the state of the art. Biophysical Reviews, 12(5), 1187-1215. doi:10.1007/s12551-020-00754-w
Benedetto, A. (2020). From just physics to biophysics of biological systems. Biophysical Reviews, 12(6), 1277-1278. doi:10.1007/s12551-020-00756-8
Benedetto, A., & Kearley, G. J. (2020). A Quantitative Comparison of the Counting Significance of van Hove Integral Spectroscopy and Quasielastic Neutron Scattering. Scientific Reports, 10(1). doi:10.1038/s41598-020-63193-3
Kumari, P., Pillai, V. V. S., Gobbo, D., Ballone, P., & Benedetto, A. (2021). The transition from salt-in-water to water-in-salt nanostructures in water solutions of organic ionic liquids relevant for biological applications. Physical Chemistry Chemical Physics, 23(2), 944-959. doi:10.1039/d0cp04959j
Gobbo, D., Cavalli, A., Ballone, P., & Benedetto, A. (2021). Computational analysis of the effect of [Tea][Ms] and [Tea][H<inf>2</inf>PO<inf>4</inf>] ionic liquids on the structure and stability of Aß(17-42) amyloid fibrils. Physical Chemistry Chemical Physics, 23(11), 6695-6709. doi:10.1039/d0cp06434c
Kumari, P., Faraone, A., Kelley, E. G., & Benedetto, A. (2021). Stiffening Effect of the [Bmim][Cl] Ionic Liquid on the Bending Dynamics of DMPC Lipid Vesicles. Journal of Physical Chemistry B, 125(26), 7241-7250. doi:10.1021/acs.jpcb.1c01347
Assoc Professor Oliver Blacque
Lange, K. I., Tsiropoulou, S., Kucharska, K., & Blacque, O. E. (2021). Interpreting the pathogenicity of joubert syndrome missense variants in caenorhabditis elegans. DMM Disease Models and Mechanisms, 14(1). doi:10.1242/DMM.046631
Acker, N., Smith, H., Devine, C., Oltjen, S. L., Tsiropoulou, S., Smit-McBride, Z., et al. (2021). A complement factor H homolog, heparan sulfation, and syndecan maintain inversin compartment boundaries in C. elegans cilia. Proceedings of the National Academy of Sciences of the United States of America, 118(16). doi:10.1073/pnas.2016698118
Park, K., Li, C., Tsiropoulou, S., Gonçalves, J., Kondratev, C., Pelletier, L., et al. (2021). CDKL kinase regulates the length of the ciliary proximal segment. Current Biology, 31(11), 2359-2373.e7. doi:10.1016/j.cub.2021.03.068
Lange, K. I., Best, S., Tsiropoulou, S., Berry, I., Johnson, C. A., & Blacque, O. E. (2021). Interpreting ciliopathy-associated missense variants of uncertain significance (VUS) in an animal model. doi:10.1101/2021.06.17.448799
Professor David Brayden
Fattah, S., Ismaiel, M., Murphy, B., Rulikowska, A., Frias, J. M., Winter, D. C., & Brayden, D. J. (2020). Salcaprozate sodium (SNAC) enhances permeability of octreotide across isolated rat and human intestinal epithelial mucosae in Ussing chambers. European Journal of Pharmaceutical Sciences, 154. doi:10.1016/j.ejps.2020.105509
Bhattacharjee, S., & Brayden, D. J. (2021). Addressing the challenges to increase the efficiency of translating nanomedicine formulations to patients. Expert Opinion on Drug Discovery, 16(3), 235-254. doi:10.1080/17460441.2021.1826434
Maher, S., Geoghegan, C., & Brayden, D. J. (2021). Intestinal permeation enhancers to improve oral bioavailability of macromolecules: reasons for low efficacy in humans. Expert Opinion on Drug Delivery, 18(2), 273-300. doi:10.1080/17425247.2021.1825375
Brayden, D. J., & Maher, S. (2021). Transient Permeation Enhancer® (TPE®) technology for oral delivery of octreotide: a technological evaluation. Expert Opinion on Drug Delivery, 18(10), 1501-1512. doi:10.1080/17425247.2021.1942838
Brayden, D. J. (2021). Per Artursson's Major Contributions to the Caco-2 Cell Literature in Pharmaceutical Sciences. Journal of Pharmaceutical Sciences, 110(1), 12-16. doi:10.1016/j.xphs.2020.08.016
Twarog, C., McCartney, F., Harrison, S. M., Illel, B., Fattal, E., & Brayden, D. J. (2021). Comparison of the effects of the intestinal permeation enhancers, SNAC and sodium caprate (C<inf>10</inf>): Isolated rat intestinal mucosae and sacs. European Journal of Pharmaceutical Sciences, 158. doi:10.1016/j.ejps.2020.105685
Brayden, D. J., & Stuettgen, V. (2021). Sodium glycodeoxycholate and sodium deoxycholate as epithelial permeation enhancers: in vitro and ex vivo intestinal and buccal bioassays. European Journal of Pharmaceutical Sciences, 159. doi:10.1016/j.ejps.2021.105737
Heade, J., McCartney, F., Chenlo, M., Marro, O. M., Severic, M., Kent, R., et al. (2021). Synthesis and in vivo evaluation of insulin-loaded whey beads as an oral peptide delivery system. Pharmaceutics, 13(5). doi:10.3390/pharmaceutics13050656
McCartney, F., Perinelli, D. R., Tiboni, M., Cavanagh, R., Lucarini, S., Filippo Palmieri, G., et al. (2021). Permeability-enhancing effects of three laurate-disaccharide monoesters across isolated rat intestinal mucosae. International Journal of Pharmaceutics, 601. doi:10.1016/j.ijpharm.2021.120593
Giffney, H. E., Cummins, E. P., Murphy, E. P., Brayden, D. J., & Crean, D. (2021). Protein kinase D, ubiquitin and proteasome pathways are involved in adenosine receptor-stimulated NR4A expression in myeloid cells. Biochemical and Biophysical Research Communications, 555, 19-25. doi:10.1016/j.bbrc.2021.03.082
Heade, J., Kent, R., Bleiel, S. B., & Brayden, D. J. (2021). Entrapment of hydrophilic and hydrophobic molecules in beads prepared from isolated denatured whey protein. Pharmaceutics, 13(7). doi:10.3390/pharmaceutics13071001
Professor Donal Brennan
McSharry, V., Mullee, A., McCann, L., Rogers, A. C., McKiernan, M., & Brennan, D. J. (2020). The Impact of Sarcopenia and Low Muscle Attenuation on Overall Survival in Epithelial Ovarian Cancer: A Systematic Review and Meta-analysis. Annals of Surgical Oncology, 27(9), 3553-3564. doi:10.1245/s10434-020-08382-0
Wilkinson, M., Sinclair, P., Dellatorre-Teixeira, L., Swan, P., Brennan, E., Moran, B., et al. (2020). The molecular effects of a high fat diet on endometrial tumour biology. Life, 10(9), 1-17. doi:10.3390/life10090188
Baxter, E., Brennan, D. J., McAlpine, J. N., Mueller, J. J., Amant, F., Van Gent, M. D. J. M., et al. (2020). Improving response to progestin treatment of low-grade endometrial cancer. International Journal of Gynecological Cancer, 30(11), 1811-1823. doi:10.1136/ijgc-2020-001309
Bartels, H. C., Mulligan, K. M., Lalor, J. G., Higgins, M. F., & Brennan, D. J. (2020). A life changing experience: An interpretative phenomenological analysis of women's experiences of placenta accreta spectrum. European Journal of Obstetrics and Gynecology and Reproductive Biology, 254, 102-108. doi:10.1016/j.ejogrb.2020.09.014
McSharry, V., Glennon, K., Mullee, A., & Brennan, D. (2021). The impact of body composition on treatment in ovarian cancer: a current insight. Expert Review of Clinical Pharmacology, 14(9), 1065-1074. doi:10.1080/17512433.2021.1937125
Crosby, D. A., Glover, L. E., Downey, P., Mooney, E. E., McAuliffe, F. M., O'Farrelly, C., et al. (2021). Mid-luteal uterine artery Doppler indices in the prediction of pregnancy outcome in nulliparous women undergoing assisted reproduction. Human Fertility. doi:10.1080/14647273.2021.1872111
Gultekin, M., Ak, S., Ayhan, A., Strojna, A., Pletnev, A., Fagotti, A., et al. (2021). Perspectives, fears and expectations of patients with gynaecological cancers during the COVID-19 pandemic: A Pan-European study of the European Network of Gynaecological Cancer Advocacy Groups (ENGAGe). Cancer Medicine, 10(1), 208-219. doi:10.1002/cam4.3605
Crotty, T., Sehgal, R., Grundy, J., Cahill, R., Brennan, D., Conneely, J., et al. (2021). Cytoreductive surgery (Crs) and hyperthermic intraperitoneal chemotherapy (hipec) for peritoneal malignancy during the covid-19 pandemic. Irish Medical Journal, 114(5).
Olaru, A., Khan, M. F., Brennan, D., Walsh, T., & Cahill, R. A. (2021). In Vitro User Assessment of a Novel Wound Protection and Specimen Extraction System for Laparoscopic Procedures Involving Morcellation. Surgical Technology International, 39. doi:10.52198/21.STI.39.SO1480
Kreileder, M., Barrett, I., Bendtsen, C., Brennan, D., & Kolch, W. (2021). Signaling Dynamics Regulating Crosstalks between T-Cell Activation and Immune Checkpoints. Trends in Cell Biology, 31(3), 224-235. doi:10.1016/j.tcb.2020.12.001
Brennan, A., Brennan, D., Rees, M., & Hickey, M. (2021). Management of menopausal symptoms and ovarian function preservation in women with gynecological cancer. International Journal of Gynecological Cancer, 31(3), 352-359. doi:10.1136/ijgc-2020-002032
Moloney, K., Janda, M., Frumovitz, M., Leitao, M., Abu-Rustum, N. R., Rossi, E., et al. (2021). Development of a surgical competency assessment tool for sentinel lymph node dissection by minimally invasive surgery for endometrial cancer. International Journal of Gynecological Cancer, 31(5), 647-655. doi:10.1136/ijgc-2020-002315
Crosby, D. A., Glover, L. E., Downey, P., Mooney, E. E., McAuliffe, F. M., O’Farrelly, C., et al. (2021). The impact of accurately timed mid-luteal endometrial injury in nulligravid women undergoing their first or second embryo transfer. Irish Journal of Medical Science, 190(3), 1071-1077. doi:10.1007/s11845-020-02414-0
Mulligan, K. M., Glennon, K., Donohoe, F., O’Brien, Y., Mc Donnell, B. C., Bartels, H. C., et al. (2021). Multidisciplinary Surgical Approach to Increase Complete Cytoreduction Rates for Advanced Ovarian Cancer in a Tertiary Gynecologic Oncology Center. Annals of Surgical Oncology, 28(8), 4553-4560. doi:10.1245/s10434-020-09494-3
Janda, M., Robledo, K. P., Gebski, V., Armes, J. E., Alizart, M., Brennan, D., et al. (2021). Corrigendum to “Complete pathological response following levonorgestrel intrauterine device in clinically stage 1 endometrial adenocarcinoma: Results of a randomized clinical trial” [Gynecologic Oncology 161 (2021) 143–151] (Gynecologic Oncology (2021) 161(1) (143–151), (S0090825821000895), (10.1016/j.ygyno.2021.01.029)). Gynecologic Oncology, 162(2), 526. doi:10.1016/j.ygyno.2021.05.016
Dr Eoin Brennan
Wilkinson, M., Sinclair, P., Dellatorre-Teixeira, L., Swan, P., Brennan, E., Moran, B., et al. (2020). The molecular effects of a high fat diet on endometrial tumour biology. Life, 10(9), 1-17. doi:10.3390/life10090188
Serhan, C. N., Gupta, S. K., Perretti, M., Godson, C., Brennan, E., Li, Y., et al. (2020). The Atlas of Inflammation Resolution (AIR).. Molecular aspects of medicine, 74, 100894. doi:10.1016/j.mam.2020.100894
Benson, K. A., Murray, S. L., Doyle, R., Doyle, B., Dorman, A. M., Sadlier, D., et al. (2020). Diagnostic utility of genetic testing in patients undergoing renal biopsy. Cold Spring Harbor Molecular Case Studies, 6(5). doi:10.1101/MCS.A005462
Wilkinson, M., Moran, B., Sinclair, P., Swan, P., Brennan, E., Docherty, N., et al. (2020). A2m – a novel diet related endometrial cancer biomarker. Gynecologic Oncology, 159, 38-39. doi:10.1016/j.ygyno.2020.06.082
Fitzsimons, S., Oggero, S., Bruen, R., McCarthy, C., Strowitzki, M. J., Mahon, N. G., et al. (2020). microRNA-155 Is Decreased During Atherosclerosis Regression and Is Increased in Urinary Extracellular Vesicles During Atherosclerosis Progression. Frontiers in Immunology, 11. doi:10.3389/fimmu.2020.576516
Galvão, I., Melo, E. M., de Oliveira, V. L. S., Vago, J. P., Queiroz-Junior, C., de Gaetano, M., et al. (2021). Therapeutic potential of the FPR2/ALX agonist AT-01-KG in the resolution of articular inflammation. Pharmacological Research, 165. doi:10.1016/j.phrs.2021.105445
Maciuszek, M., Cacace, A., Brennan, E., Godson, C., & Chapman, T. M. (2021). Recent advances in the design and development of formyl peptide receptor 2 (FPR2/ALX) agonists as pro-resolving agents with diverse therapeutic potential. European Journal of Medicinal Chemistry, 213. doi:10.1016/j.ejmech.2021.113167
Oggero, S., de Gaetano, M., Marcone, S., Fitzsimons, S., Pinto, A. L., Ikramova, D., et al. (2021). Extracellular vesicles from monocyte/platelet aggregates modulate human atherosclerotic plaque reactivity. Journal of Extracellular Vesicles, 10(6). doi:10.1002/jev2.12084
De Gaetano, M., Tighe, C., Gahan, K., Zanetti, A., Chen, J., Newson, J., et al. (2021). Asymmetric Synthesis and Biological Screening of Quinoxaline-Containing Synthetic Lipoxin A<inf>4</inf>Mimetics (QNX-sLXms). Journal of Medicinal Chemistry, 64(13), 9193-9216. doi:10.1021/acs.jmedchem.1c00403
Dr Gary Brennan
Brennan, G. P., & Henshall, D. C. (2020). MicroRNAs as regulators of brain function and targets for treatment of epilepsy. Nature Reviews Neurology, 16(9), 506-519. doi:10.1038/s41582-020-0369-8
Brennan, G. P., Bauer, S., Engel, T., Jimenez-Mateos, E. M., Del Gallo, F., Hill, T. D. M., et al. (2020). Genome-wide microRNA profiling of plasma from three different animal models identifies biomarkers of temporal lobe epilepsy.. Neurobiology of disease, 144, 105048. doi:10.1016/j.nbd.2020.105048
Casey, S., Goasdoue, K., Miller, S. M., Brennan, G. P., Cowin, G., O’Mahony, A. G., et al. (2020). Temporally Altered miRNA Expression in a Piglet Model of Hypoxic Ischemic Brain Injury. Molecular Neurobiology, 57(10), 4322-4344. doi:10.1007/s12035-020-02018-w
Conboy, K., Henshall, D. C., & Brennan, G. P. (2021). Epigenetic principles underlying epileptogenesis and epilepsy syndromes. Neurobiology of Disease, 148. doi:10.1016/j.nbd.2020.105179
Wilson, M. M., Henshall, D. C., Byrne, S. M., & Brennan, G. P. (2021). Chd2-related cns pathologies. International Journal of Molecular Sciences, 22(2), 1-20. doi:10.3390/ijms22020588
Brennan, G. P., Garcia-Curran, M. M., Patterson, K. P., Luo, R., & Baram, T. Z. (2021). Multiple Disruptions of Glial-Neuronal Networks in Epileptogenesis That Follows Prolonged Febrile Seizures. Frontiers in Neurology, 12. doi:10.3389/fneur.2021.615802
Mathoux, J., Henshall, D. C., & Brennan, G. P. (2021). Regulatory Mechanisms of the RNA Modification m<sup>6</sup>A and Significance in Brain Function in Health and Disease. Frontiers in Cellular Neuroscience, 15. doi:10.3389/fncel.2021.671932
Reschke, C. R., Silva, L. F. A., Vangoor, V. R., Rosso, M., David, B., Cavanagh, B. L., et al. (2021). Systemic delivery of antagomirs during blood-brain barrier disruption is disease-modifying in experimental epilepsy. Molecular Therapy, 29(6), 2041-2052. doi:10.1016/j.ymthe.2021.02.021
Professor Lorraine Brennan
Flanagan, E., Lamport, D., Brennan, L., Burnet, P., Calabrese, V., Cunnane, S. C., et al. (2020). Nutrition and the ageing brain: Moving towards clinical applications. Ageing Research Reviews, 62. doi:10.1016/j.arr.2020.101079
Feskens, E., Brennan, L., Dussort, P., Flourakis, M., Lindner, L. M. E., Mela, D., et al. (2020). Potential Markers of Dietary Glycemic Exposures for Sustained Dietary Interventions in Populations without Diabetes. Advances in Nutrition, 11(5), 1221-1236. doi:10.1093/advances/nmaa058
Hillesheim, E., Ryan, M. F., Gibney, E., Roche, H. M., & Brennan, L. (2020). Optimisation of a metabotype approach to deliver targeted dietary advice. Nutrition and Metabolism, 17(1). doi:10.1186/s12986-020-00499-z
McNamara, A. E., & Brennan, L. (2020). Potential of food intake biomarkers in nutrition research. Proceedings of the Nutrition Society, 79(4), 487-497. doi:10.1017/S0029665120007053
Horner, K., Hopkins, M., Finlayson, G., Gibbons, C., & Brennan, L. (2020). Biomarkers of appetite: Is there a potential role for metabolomics?. Nutrition Research Reviews, 33(2), 271-286. doi:10.1017/S0954422420000062
Zare Jeddi, M., Hopf, N. B., Viegas, S., Price, A. B., Paini, A., van Thriel, C., et al. (2021). Towards a systematic use of effect biomarkers in population and occupational biomonitoring. Environment International, 146. doi:10.1016/j.envint.2020.106257
Heeran, A. B., Berrigan, H. P., Buckley, C. E., Bottu, H. M., Prendiville, O., Buckley, A. M., et al. (2021). Radiation-induced Bystander Effect (RIBE) alters mitochondrial metabolism using a human rectal cancer ex vivo explant model. Translational Oncology, 14(1). doi:10.1016/j.tranon.2020.100882
McNamara, A. E., Walton, J., Flynn, A., Nugent, A. P., McNulty, B. A., & Brennan, L. (2021). The Potential of Multi-Biomarker Panels in Nutrition Research: Total Fruit Intake as an Example. Frontiers in Nutrition, 7. doi:10.3389/fnut.2020.577720
Burton-Pimentel, K. J., Pimentel, G., Hughes, M., Michielsen, C. C. J. R., Fatima, A., Vionnet, N., et al. (2021). Discriminating Dietary Responses by Combining Transcriptomics and Metabolomics Data in Nutrition Intervention Studies. Molecular Nutrition and Food Research, 65(4). doi:10.1002/mnfr.202000647
Mongan, D., Yin, X., Brennan, L., & Cotter, D. R. (2021). Dysregulation of Lipid Metabolism Precedes Psychosis…So Is Psychosis a Metabolic Disorder?. Biological Psychiatry, 89(3), 209-211. doi:10.1016/j.biopsych.2020.10.017
O'Callaghan, T. F., O'Donovan, M., Murphy, J. P., Sugrue, K., Tobin, J. T., McNamara, A. E., et al. (2021). The bovine colostrum and milk metabolome at the onset of lactation as determined by <sup>1</sup>H-NMR. International Dairy Journal, 113. doi:10.1016/j.idairyj.2020.104881
Brennan, L., & De Roos, B. (2021). Nutrigenomics: Lessons learned and future perspectives. American Journal of Clinical Nutrition, 113(3), 503-516. doi:10.1093/ajcn/nqaa366
Bermingham, K. M., Brennan, L., Segurado, R., Barron, R. E., Gibney, E. R., Ryan, M. F., et al. (2021). Genetic and environmental influences on covariation in reproducible diet-metabolite associations. American Journal of Clinical Nutrition, 113(5), 1232-1240. doi:10.1093/ajcn/nqaa378
Nychyk, O., Barton, W., Rudolf, A. M., Boscaini, S., Walsh, A., Bastiaanssen, T. F. S., et al. (2021). Protein quality and quantity influence the effect of dietary fat on weight gain and tissue partitioning via host-microbiota changes. Cell Reports, 35(6). doi:10.1016/j.celrep.2021.109093
Emwas, A. H. M., Al-Rifai, N., Szczepski, K., Alsuhaymi, S., Rayyan, S., Almahasheer, H., et al. (2021). You are what you eat: Application of metabolomics approaches to advance nutrition research. Foods, 10(6). doi:10.3390/foods10061249
Prendiville, O., Walton, J., Flynn, A., Nugent, A. P., McNulty, B. A., & Brennan, L. (2021). Classifying Individuals Into a Dietary Pattern Based on Metabolomic Data. Molecular Nutrition and Food Research, 65(11). doi:10.1002/mnfr.202001183
Wirth, J., Hillesheim, E., & Brennan, L. (2021). Protein Intake and Its Association With Sleep: A Systematic Review and Meta-Analysis of Randomized Controlled Trials. Current Developments in Nutrition, 5(Supplement_2), 195. doi:10.1093/cdn/nzab035_103
Brennan, L., & Conolly, C. (2021). Impact of Lactation Stage on the Metabolite Composition of Milk. Current Developments in Nutrition, 5(Supplement_2), 575. doi:10.1093/cdn/nzab044_006
Livingstone, K., Celis-Morales, C., Navas-Carretero, S., San-Cristobal, R., Forster, H., Woolhead, C., et al. (2021). Personalized Nutrition Advice Reduces Intake of Discretionary Foods and Beverages: Findings From the Food4Me Randomized Controlled Trial. Current Developments in Nutrition, 5(Supplement_2), 152. doi:10.1093/cdn/nzab035_060
Walshe, N., Cabrera-Rubio, R., Collins, R., Puggioni, A., Gath, V., Crispie, F., et al. (2021). A Multiomic Approach to Investigate the Effects of a Weight Loss Program on the Intestinal Health of Overweight Horses. Frontiers in Veterinary Science, 8. doi:10.3389/fvets.2021.668120
Yau-Qiu, Z. X., Madrid-Gambin, F., Brennan, L., Palou, A., & Rodríguez, A. M. (2021). Leptin Supplementation During Lactation Restores Key Liver Metabolite Levels Malprogrammed by Gestational Calorie Restriction. Molecular Nutrition and Food Research, 65(16). doi:10.1002/mnfr.202001046
Bermingham, K. M., Brennan, L., Segurado, R., Barron, R. E., Gibney, E. R., Ryan, M. F., et al. (2021). Genetic and Environmental Contributions to Variation in the Stable Urinary NMR Metabolome over Time: A Classic Twin Study. Journal of Proteome Research, 20(8), 3992-4000. doi:10.1021/acs.jproteome.1c00319
Professor Geraldine Butler
Pais, P., Califórnia, R., Galocha, M., Viana, R., Ola, M., Cavalheiro, M., et al. (2020). Candida glabrata transcription factor Rpn4 mediates fluconazole resistance through regulation of ergosterol biosynthesis and plasma membrane permeability. Antimicrobial Agents and Chemotherapy, 64(9). doi:10.1128/AAC.00554-20
Mancera, E., Nocedal, I., Hammel, S., Gulati, M., Mitchell, K. F., Andes, D. R., et al. (2021). Evolution of the complex transcription network controlling biofilm formation in candida species. eLife, 10. doi:10.7554/ELIFE.64682
O'Brien, C. E., Oliveira-Pacheco, J., Cinnéide, E., Haase, M. A. B., Hittinger, C. T., Rogers, T. R., et al. (2021). Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples. PLoS Pathogens, 17(3). doi:10.1371/JOURNAL.PPAT.1009138
Pekmezovic, M., Hovhannisyan, H., Gresnigt, M. S., Iracane, E., Oliveira-Pacheco, J., Siscar-Lewin, S., et al. (2021). Candida pathogens induce protective mitochondria-associated type I interferon signalling and a damage-driven response in vaginal epithelial cells. Nature Microbiology, 6(5), 643-657. doi:10.1038/s41564-021-00875-2
O'Brien, C. E., Zhai, B., Ola, M., Ó Cinnéide, E., O'Connor, Í., Rolling, T., et al. (2021). Identification of a novel <i>Candida metapsilosis</i> isolate suggests ongoing hybridization.. doi:10.1101/2021.07.15.452539
Assoc Professor Gerard Cagney
Mongan, D., Föcking, M., Healy, C., Susai, S. R., Heurich, M., Wynne, K., et al. (2021). Development of Proteomic Prediction Models for Transition to Psychotic Disorder in the Clinical High-Risk State and Psychotic Experiences in Adolescence. JAMA Psychiatry, 78(1), 77-90. doi:10.1001/jamapsychiatry.2020.2459
Dowling, C. M., Hollinshead, K. E. R., Di Grande, A., Pritchard, J., Zhang, H., Dillon, E. T., et al. (2021). Multiple screening approaches reveal HDAC6 as a novel regulator of glycolytic metabolism in triple-negative breast cancer. Science Advances, 7(3). doi:10.1126/sciadv.abc4897
Föcking, M., Sabherwal, S., Cates, H. M., Scaife, C., Dicker, P., Hryniewiecka, M., et al. (2021). Complement pathway changes at age 12 are associated with psychotic experiences at age 18 in a longitudinal population-based study: evidence for a role of stress. Molecular Psychiatry, 26(2), 524-533. doi:10.1038/s41380-018-0306-z
Dr Colm Collins
Olli, K. E., Rapp, C., Connell, L. O., Collins, C. B., McNamee, E. N., Jensen, O., et al. (2020). Muc5ac expression protects the colonic barrier in experimental colitis. Inflammatory Bowel Diseases, 26(9), 1353-1367. doi:10.1093/ibd/izaa064
Dr Derek Costello
Jones, A. C., Pinki, F., Stewart, G. S., & Costello, D. A. (2021). Inhibition of Urea Transporter (UT)-B Modulates LPS-Induced Inflammatory Responses in BV2 Microglia and N2a Neuroblastoma Cells. Neurochemical Research, 46(6), 1322-1329. doi:10.1007/s11064-021-03283-4
Dr Daniel Crean
Crean, D., & Murphy, E. P. (2021). Targeting NR4A Nuclear Receptors to Control Stromal Cell Inflammation, Metabolism, Angiogenesis, and Tumorigenesis. Frontiers in Cell and Developmental Biology, 9. doi:10.3389/fcell.2021.589770
Ismaiel, M., Murphy, B., Aldhafiri, S., Giffney, H. E., Thornton, K., Mukhopadhya, A., et al. (2021). The NR4A agonist, Cytosporone B, attenuates pro-inflammatory mediators in human colorectal cancer tissue ex vivo. Biochemical and Biophysical Research Communications, 554, 179-185. doi:10.1016/j.bbrc.2021.03.110
Giffney, H. E., Cummins, E. P., Murphy, E. P., Brayden, D. J., & Crean, D. (2021). Protein kinase D, ubiquitin and proteasome pathways are involved in adenosine receptor-stimulated NR4A expression in myeloid cells. Biochemical and Biophysical Research Communications, 555, 19-25. doi:10.1016/j.bbrc.2021.03.082
Phelan, D. E., Shigemura, M., Aldhafiri, S., Mota, C., Hall, T. J., Sznajder, J. I., et al. (2021). Transcriptional Profiling of Monocytes Deficient in Nuclear Orphan Receptors NR4A2 and NR4A3 Reveals Distinct Signalling Roles Related to Antigen Presentation and Viral Response. Frontiers in Immunology, 12. doi:10.3389/fimmu.2021.676644
Assoc Professor John Crean
Monks, P., Wychowaniec, J. K., McKiernan, E., Clerkin, S., Crean, J., Rodriguez, B. J., et al. (2021). Spatiotemporally Resolved Heat Dissipation in 3D Patterned Magnetically Responsive Hydrogels. Small, 17(5). doi:10.1002/smll.202004452
Professor Mark Crowe
Beltman, M. E., McNally, J. C., Kelly, E., & Crowe, M. A. (2020). Relationship between plasma concentrations of IGF-I and clinical endometritis, and response to progesterone synchrony in dairy cows during early lactation. Journal of Dairy Science, 103(10), 9493-9501. doi:10.3168/jds.2019-17974
Menezes, C., Malo-Estepa, I., Johnston, D., Delaney, A., Crowe, M., Diskin, M., & Dempsey, E. (2020). Electrochemical assay of sorbitol dehydrogenase at PEDOT modified electrodes-a new milk biomarker for confirmation of pregnancy in dairy cattle. Analyst, 145(22), 7267-7278. doi:10.1039/d0an01360a
Buggiotti, L., Cheng, Z., Claire Wathes, D., Crowe, M., McLoughlin, N., Fahey, A., et al. (2020). Mining the unmapped reads in bovine RNA-seq data reveals the prevalence of bovine herpes virus-6 in european dairy cows and the associated changes in their phenotype and leucocyte transcriptome. Viruses, 12(12). doi:10.3390/v12121451
Coen, S. P., Keogh, K., Byrne, C. J., Lonergan, P., Fair, S., Crowe, M. A., & Kenny, D. A. (2021). Effect of plane of nutrition during the first 12 weeks of life on growth, metabolic and reproductive hormone concentrations, and testicular relative mRNA abundance in preweaned Holstein Friesian bull calves. Journal of Animal Science, 99(9), 1-12. doi:10.1093/jas/skab195
Kelly, E. T., McAloon, C. G., O'Grady, L., Furlong, J., Crowe, M. A., & Beltman, M. E. (2021). Cow-level prevalence and risk factors for estrus detection inaccuracy in seasonal calving pasture-based dairy cows. Theriogenology, 161, 41-48. doi:10.1016/j.theriogenology.2020.11.011
Wathes, D. C., Cheng, Z., Salavati, M., Buggiotti, L., Takeda, H., Tang, L., et al. (2021). Relationships between metabolic profiles and gene expression in liver and leukocytes of dairy cows in early lactation. Journal of Dairy Science, 104(3), 3596-3616. doi:10.3168/jds.2020-19165
Chen, Y., Vanderick, S., Mota, R. R., Grelet, C., Gengler, N., Crowe, M., et al. (2021). Estimation of genetic parameters for predicted nitrogen use efficiency and losses in early lactation of Holstein cows. Journal of Dairy Science, 104(4), 4413-4423. doi:10.3168/jds.2020-18849
Wathes, D. C., Tang, L., Ferris, C., Hostens, M., Crowe, M. A., McLoughlin, N., et al. (2021). Corrigendum to “Relationships between metabolic profiles and gene expression in liver and leukocytes of dairy cows in early lactation” (J. Dairy Sci. 104:3596–3616) (Journal of Dairy Science (2021) 104(3) (3596–3616), (S0022030221000321), (10.3168/jds.2020-19165)). Journal of Dairy Science, 104(5), 6327. doi:10.3168/jds.2021-104-5-6327
Tedde, A., Grelet, C., Ho, P. N., Pryce, J. E., Hailemariam, D., Wang, Z., et al. (2021). Validation of Dairy Cow Bodyweight Prediction Using Traits Easily Recorded by Dairy Herd Improvement Organizations and Its Potential Improvement Using Feature Selection Algorithms. Animals, 11(5). doi:10.3390/ani11051288
Cheng, Z., Buggiotti, L., Salavati, M., Marchitelli, C., Palma-Vera, S., Wylie, A., et al. (2021). Global transcriptomic profiles of circulating leucocytes in early lactation cows with clinical or subclinical mastitis. Molecular Biology Reports, 48(5), 4611-4623. doi:10.1007/s11033-021-06494-8
Tedde, A., Grelet, C., Ho, P. N., Pryce, J. E., Hailemariam, D., Wang, Z., et al. (2021). Multiple country approach to improve the test-day prediction of dairy cows’ dry matter intake. Animals, 11(5). doi:10.3390/ani11051316
Atashi, H., Hostens, M., Crowe, M., McLoughlin, N., Fahey, A., Carter, F., et al. (2021). Genetic parameters for milk urea and its relationship with milk yield and compositions in Holstein dairy cows. PLoS ONE, 16(6). doi:10.1371/journal.pone.0253191
Dr Eoin Cummins
Adeeb, F., Dorris, E. R., Morgan, N. E., Lawless, D., Maqsood, A., Ng, W. L., et al. (2021). A Novel RELA Truncating Mutation in a Familial Behçet’s Disease–like Mucocutaneous Ulcerative Condition. Arthritis and Rheumatology, 73(3), 490-497. doi:10.1002/art.41531
Molloy, E. J., & Cummins, E. P. (2021). Carbon dioxide as a drug in neonatology. Pediatric Research, 89(5), 1049-1050. doi:10.1038/s41390-020-1051-y
Phelan, D. E., Mota, C., Lai, C., Kierans, S. J., & Cummins, E. P. (2021). Carbon dioxide-dependent signal transduction in mammalian systems. Interface Focus, 11(2). doi:10.1098/rsfs.2020.0033
Linthwaite, V. L., Cummins, E., & Cann, M. J. (2021). Carbon dioxide detection in biological systems. Interface Focus, 11(2). doi:10.1098/rsfs.2021.0001
Ismaiel, M., Murphy, B., Aldhafiri, S., Giffney, H. E., Thornton, K., Mukhopadhya, A., et al. (2021). The NR4A agonist, Cytosporone B, attenuates pro-inflammatory mediators in human colorectal cancer tissue ex vivo. Biochemical and Biophysical Research Communications, 554, 179-185. doi:10.1016/j.bbrc.2021.03.110
Giffney, H. E., Cummins, E. P., Murphy, E. P., Brayden, D. J., & Crean, D. (2021). Protein kinase D, ubiquitin and proteasome pathways are involved in adenosine receptor-stimulated NR4A expression in myeloid cells. Biochemical and Biophysical Research Communications, 555, 19-25. doi:10.1016/j.bbrc.2021.03.082
Phelan, D. E., Shigemura, M., Aldhafiri, S., Mota, C., Hall, T. J., Sznajder, J. I., et al. (2021). Transcriptional Profiling of Monocytes Deficient in Nuclear Orphan Receptors NR4A2 and NR4A3 Reveals Distinct Signalling Roles Related to Antigen Presentation and Viral Response. Frontiers in Immunology, 12. doi:10.3389/fimmu.2021.676644
Professor Kenneth Dawson
Boselli, L., Lopez, H., Zhang, W., Cai, Q., Giannone, V. A., Li, J., et al. (2020). Classification and biological identity of complex nano shapes. Communications Materials, 1(1). doi:10.1038/s43246-020-0033-2
Dawson, K. A., & Yan, Y. (2021). Current understanding of biological identity at the nanoscale and future prospects. Nature Nanotechnology, 16(3), 229-242. doi:10.1038/s41565-021-00860-0
Hristov, D. R., Lopez, H., Ortin, Y., O'Sullivan, K., Dawson, K. A., & Brougham, D. F. (2021). Impact of dynamic sub-populations within grafted chains on the protein binding and colloidal stability of PEGylated nanoparticles. Nanoscale, 13(10), 5344-5355. doi:10.1039/d0nr08294e
Perez-Potti, A., Lopez, H., Pelaz, B., Abdelmonem, A., Soliman, M. G., Schoen, I., et al. (2021). In depth characterisation of the biomolecular coronas of polymer coated inorganic nanoparticles with differential centrifugal sedimentation.. Scientific reports, 11(1), 6443. doi:10.1038/s41598-021-84029-8
Sanchez-Cano, C., Alvarez-Puebla, R. A., Abendroth, J. M., Beck, T., Blick, R., Cao, Y., et al. (2021). X-ray-Based Techniques to Study the Nano-Bio Interface. ACS Nano, 15(3), 3754-3807. doi:10.1021/acsnano.0c09563
Sheridan, E., Vercellino, S., Cursi, L., Adumeau, L., Behan, J. A., & Dawson, K. A. (2021). Understanding intracellular nanoparticle trafficking fates through spatiotemporally resolved magnetic nanoparticle recovery. Nanoscale Advances, 3(9), 2397-2410. doi:10.1039/d0na01035a
Wang, Y. F., Zhang, C., Yang, K., Wang, Y., Shan, S., Yan, Y., et al. (2021). Transportation of AIE-visualized nanoliposomes is dominated by the protein corona. National Science Review, 8(6). doi:10.1093/nsr/nwab068
Shang, X., Chen, H., Castagnola, V., Liu, K., Boselli, L., Petseva, V., et al. (2021). Unusual zymogen activation patterns in the protein corona of Ca-zeolites. Nature Catalysis, 4(7), 607-614. doi:10.1038/s41929-021-00654-6
Assoc Professor Neil Gerard Docherty
Wilkinson, M., Sinclair, P., Dellatorre-Teixeira, L., Swan, P., Brennan, E., Moran, B., et al. (2020). The molecular effects of a high fat diet on endometrial tumour biology. Life, 10(9), 1-17. doi:10.3390/life10090188
Wilkinson, M., Moran, B., Sinclair, P., Swan, P., Brennan, E., Docherty, N., et al. (2020). A2m – a novel diet related endometrial cancer biomarker. Gynecologic Oncology, 159, 38-39. doi:10.1016/j.ygyno.2020.06.082
Silveira, F. C., Docherty, N. G., Sallet, P. C., Moraes, M., Monclaro, T., Arruda e Silva, M., et al. (2020). Early Post-operative Weight Change After Roux-en-Y Gastric Bypass Predicts Weight Loss at 12-Month Follow-up. Obesity Surgery, 30(12), 5020-5025. doi:10.1007/s11695-020-04942-1
Docherty, N. G., & le Roux, C. W. (2020). Bariatric surgery for the treatment of chronic kidney disease in obesity and type 2 diabetes mellitus. Nature Reviews Nephrology, 16(12), 709-720. doi:10.1038/s41581-020-0323-4
Martin, W. P., Tuohy, C., Doody, A., Jackson, S., Canavan, R. J., Slattery, D., et al. (2020). Parallel assessment of albuminuria and plasma sTNFR1 in people with type 2 diabetes and advanced chronic kidney disease provides accurate prognostication of the risks of renal decline and death. Scientific Reports, 10(1). doi:10.1038/s41598-020-71684-6
Martin, W. P., Bauer, J., Coleman, J., Dellatorre-Teixeira, L., Reeve, J. L. V., Twomey, P. J., et al. (2020). Obesity is common in chronic kidney disease and associates with greater antihypertensive usage and proteinuria: evidence from a cross-sectional study in a tertiary nephrology centre.. Clinical obesity, 10(6), e12402. doi:10.1111/cob.12402
Moffett, R. C., Docherty, N. G., & le Roux, C. W. (2021). The altered enteroendocrine reportoire following roux-en-Y-gastric bypass as an effector of weight loss and improved glycaemic control. Appetite, 156. doi:10.1016/j.appet.2020.104807
Murphy, C. F., Stratford, N., Docherty, N. G., Moran, B., Elliott, J. A., Healy, M. L., et al. (2021). A Pilot Study of Gut-Brain Signaling after Octreotide Therapy for Unintentional Weight Loss after Esophagectomy. Journal of Clinical Endocrinology and Metabolism, 106(1), E204-E216. doi:10.1210/clinem/dgaa697
Murphy, C. F., Fanning, M., Raftery, N., Elliott, J. A., Docherty, N. G., Donohoe, C. L., et al. (2021). Early experience with a nutrition and survivorship clinic in esophageal cancer. Diseases of the esophagus : official journal of the International Society for Diseases of the Esophagus, 34(2). doi:10.1093/dote/doaa061
Murphy, C. F., Elliott, J. A., Docherty, N. G., Mohamed, A. A., Vincent, R. P., Ravi, N., et al. (2021). Exaggerated postprandial GLP-1 secretion following esophagectomy is not associated with gastric emptying and intestinal transit. Diseases of the Esophagus, 34(7). doi:10.1093/dote/doaa098
Professor Guenther Eissner
Silini, A. R., Di Pietro, R., Lang-Olip, I., Alviano, F., Banerjee, A., Basile, M., et al. (2020). Perinatal Derivatives: Where Do We Stand? A Roadmap of the Human Placenta and Consensus for Tissue and Cell Nomenclature. Frontiers in Bioengineering and Biotechnology, 8. doi:10.3389/fbioe.2020.610544
Lelas, A., Greinix, H. T., Wolff, D., Eissner, G., Pavletic, S. Z., & Pulanic, D. (2021). Von Willebrand Factor, Factor VIII, and Other Acute Phase Reactants as Biomarkers of Inflammation and Endothelial Dysfunction in Chronic Graft-Versus-Host Disease. Frontiers in Immunology, 12. doi:10.3389/fimmu.2021.676756
Professor Alexander Evans
Succu, S., Sale, S., Ghirello, G., Ireland, J. J., Evans, A. C. O., Atzori, A. S., & Mossa, F. (2020). Exposure of dairy cows to high environmental temperatures and their lactation status impairs establishment of the ovarian reserve in their offspring. Journal of Dairy Science, 103(12), 11957-11969. doi:10.3168/jds.2020-18678
Pluta, K., Jones, P. R. H., Drabinska, N., Ratcliffe, N., Carrington, S. D., Lonergan, P., & Evans, A. C. O. (2021). The potential of volatile organic compound analysis in cervicovaginal mucus to predict estrus and ovulation in estrus-synchronized heifers. Journal of Dairy Science, 104(1), 1087-1098. doi:10.3168/jds.2020-19024
Cesco, S., Zara, V., De Toni, A. F., Lugli, P., Evans, A., & Orzes, G. (2021). The future challenges of scientific and technical higher education. Tuning Journal for Higher Education, 8(2), 85-117. doi:10.18543/TJHE-8(2)-2021PP85-117
Rivero, M. J., Lopez-Villalobos, N., Evans, A., Berndt, A., Cartmill, A., Neal, A. L., et al. (2021). Key traits for ruminant livestock across diverse production systems in the context of climate change: Perspectives from a global platform of research farms. Reproduction, Fertility and Development, 33(2), 1-19. doi:10.1071/RD20205
O'Sullivan, R., Monahan, F. J., Bahar, B., Kirwan, L., Pierce, K., O'Shea, A., et al. (2021). Stable isotope profile (C, N, O, S) of Irish raw milk: Baseline data for authentication. Food Control, 121. doi:10.1016/j.foodcont.2020.107643
Cesco, S., Zara, V., Toni, A. F. D., Lugli, P., Betta, G., Evans, A. C. O., & Orzes, G. (2022). Higher Education in the First Year of COVID-19: Thoughts and Perspectives for the Future. International Journal of Higher Education, 10(3), 285. doi:10.5430/ijhe.v10n3p285
Liu, W. H., La Teng Zhu La, A., Evans, A. C. O., Gao, S. T., Yu, Z. T., Ma, L., & Bu, D. P. (2021). Supplementation with Yucca schidigera improves antioxidant capability and immune function and decreases fecal score of dairy calves before weaning. Journal of Dairy Science, 104(4), 4317-4325. doi:10.3168/jds.2020-18980
Alrabiah, N. A., Evans, A. C. O., Fahey, A. G., Cantwell, N., Lonergan, P., McCormack, J., et al. (2021). Immunological aspects of ovarian follicle ovulation and corpus luteum formation in cattle. Reproduction, 162(3), 209-225. doi:10.1530/REP-21-0165

Assoc Professor Paul Evans
Collins, N., Connon, R., Sánchez-Sanz, G., & Evans, P. (2020). Isomerisation of Vinyl Sulfones for the Stereoselective Synthesis of Vinyl Azides. European Journal of Organic Chemistry, 2020(39), 6228-6235. doi:10.1002/ejoc.202001065
Collins, N., Connon, R., Sánchez-Sanz, G., & Evans, P. (2020). Cover Feature: Isomerisation of Vinyl Sulfones for the Stereoselective Synthesis of Vinyl Azides (Eur. J. Org. Chem. 43/2020). European Journal of Organic Chemistry, 2020(43), 6674. doi:10.1002/ejoc.202001290
Doherty, W., Adler, N., Butler, T. J., Knox, A. J. S., & Evans, P. (2020). Synthesis and optimisation of P<inf>3</inf> substituted vinyl sulfone-based inhibitors as anti-trypanosomal agents. Bioorganic and Medicinal Chemistry, 28(23). doi:10.1016/j.bmc.2020.115774
Collins, N., Sánchez-Sanz, G., & Evans, P. (2021). Conversions of sulfone-containing vinyl azides to vinyl triazoles and enamides. Tetrahedron, 83. doi:10.1016/j.tet.2021.131933
Mordechay, S., Smullen, S., Evans, P., Genin, O., Pines, M., & Halevy, O. (2021). Differential effects of halofuginone enantiomers on muscle fibrosis and histopathology in duchenne muscular dystrophy. International Journal of Molecular Sciences, 22(13). doi:10.3390/ijms22137063
Professor Aurelie Fabre
O'Carroll, O., Cullen, J., Fabre, A., Murphy, D. J., Dodd, J. D., Keane, M. P., & McCarthy, C. (2020). Phenotypic Variation of Birt-Hogg-Dubé Syndrome Within a Single Family. Chest, 158(4), 1790-1791. doi:10.1016/j.chest.2020.04.065
McCarthy, C., Keane, M. P., & Fabre, A. (2020). Lipid-laden macrophages are not diagnostic of pulmonary alveolar proteinosis syndrome and can indicate lung injury. American Journal of Respiratory and Critical Care Medicine, 208(8), 1197-1198. doi:10.1164/rccm.202005-1880LE
Worrell, J. C., Walsh, S. M., Fabre, A., Kane, R., Hinz, B., & Keane, M. P. (2020). CXCR3A promotes the secretion of the antifibrotic decoy receptor sIL-13Ra2 by pulmonary fibroblasts. American Journal of Physiology - Cell Physiology, 319(6), C1059-C1069. doi:10.1152/ajpcell.00076.2020
Fleming, H., Clifford, S. M., Haughey, A., MacDermott, R., McVeigh, N., Healy, G. M., et al. (2020). Differentiating combined pulmonary fibrosis and emphysema from pure emphysema: utility of late gadolinium-enhanced MRI. European Radiology Experimental, 4(1). doi:10.1186/s41747-020-00187-w
Hawkins, P., Doyle, A., Gavin, L., Fabre, A., Murphy, D. J., Dunican, E., & McCarthy, C. (2021). A 33-Year-Old Man With Dyspnea, Chest Pain, and a Massive Pleural Effusion. Chest, 159(1), e39-e43. doi:10.1016/j.chest.2020.08.2102
Hofman, P., Ilié, M., Chamorey, E., Brest, P., Schiappa, R., Nakache, V., et al. (2021). Clinical and molecular practice of European thoracic pathology laboratories during the COVID-19 pandemic. The past and the near future. ESMO Open, 6(1). doi:10.1016/j.esmoop.2020.100024
Murray, K., Floudas, A., Murray, C., Fabre, A., Crown, J., Fearon, U., & Veale, D. (2021). First use of tofacitinib to treat an immune checkpoint inhibitor-induced arthritis. BMJ Case Reports, 14(2). doi:10.1136/bcr-2020-238851
O'Brien, L. M., Thuillier, R., Tolan, M., & Fabre, A. (2021). Clear cell 'sugar' tumour of the lung. BMJ Case Reports, 14(2). doi:10.1136/bcr-2021-241698
De Backer, O., Hafiz, H., Fabre, A., Lertsapcharoen, P., Srimahachota, S., Foley, D., & Sondergaard, L. (2021). State-of-the-art preclinical testing of the OMEGA<sup>TM</sup> left atrial appendage occluder. Catheterization and Cardiovascular Interventions, 97(7), E1011-E1018. doi:10.1002/ccd.29331
Keane, S., Fabre, A., & Keane, D. (2021). Characterization of atrial histology in a patient with hypertrophic cardiomyopathy: Possible evidence of a primary atrial myopathy. HeartRhythm Case Reports, 7(6), 413-417. doi:10.1016/j.hrcr.2021.03.017
Hawkins, P., Chawke, L., Cormican, L., Wikenheiser-Brokamp, K. A., Fabre, A., Keane, M. P., & McCarthy, C. (2021). Autoimmune pulmonary alveolar proteinosis: a discrepancy between symptoms and CT findings. The Lancet, 398(10296), e7. doi:10.1016/S0140-6736(21)01254-X
MacCann, R., O'Brien, C., McCarthy, C., Dodd, J. D., Fabre, A., & Feeney, E. R. (2021). Cavitary Pneumocystis jirovecii pneumonia. QJM, 114(8), 607-608. doi:10.1093/qjmed/hcab122
Professor Oliver Fitzgerald
Nash, P., Coates, L. C., Kivitz, A. J., Mease, P. J., Gladman, D. D., Covarrubias-Cobos, J. A., et al. (2020). Safety and Efficacy of Tofacitinib in Patients with Active Psoriatic Arthritis: Interim Analysis of OPAL Balance, an Open-Label, Long-Term Extension Study. Rheumatology and Therapy, 7(3), 553-580. doi:10.1007/s40744-020-00209-4
Haroon, M., Gallaghar, P., Ahmad, M., & FitzGerald, O. (2020). Elevated CRP even at the first visit to a rheumatologist is associated with long-term poor outcomes in patients with psoriatic arthritis. Clinical Rheumatology, 39(10), 2951-2961. doi:10.1007/s10067-020-05065-9
Shakerdi, L. A., Al Ghafri, A., Swan, N., O' Shea, D., McGuigan, C., Hutchinson, M., & FitzGerald, O. (2020). Update: Atypical presentation of a midgut neuroendocrine tumor originally diagnosed as eosinophilic fasciitis. Neurology, 95(15), 695-697. doi:10.1212/WNL.0000000000010715
Kirby, B., & Fitzgerald, O. (2020). A new biomarker for psoriatic arthritis?. British Journal of Dermatology, 183(5), 805-806. doi:10.1111/bjd.19141
Jadon, D. R., Stober, C., Pennington, S. R., & FitzGerald, O. (2020). Applying precision medicine to unmet clinical needs in psoriatic disease. Nature Reviews Rheumatology, 16(11), 609-627. doi:10.1038/s41584-020-00507-9
Bell, S., Merola, J. F., Webster, D. E., Pennington, S. R., Liao, W., Ogdie, A., et al. (2020). Aiming for Cure and Preventive Initiatives in Psoriatic Disease: Building Synergy at NPF, GRAPPA, and PPACMAN. Current Rheumatology Reports, 22(11). doi:10.1007/s11926-020-00958-9
Magee, C., Jethwa, H., FitzGerald, O. M., & Jadon, D. R. (2021). Biomarkers predictive of treatment response in psoriasis and psoriatic arthritis: a systematic review. Therapeutic Advances in Musculoskeletal Disease, 13. doi:10.1177/1759720X211014010
Goodchild, C., O’Rourke, M., Haroon, M., FitzGerald, O., & Murphy, C. C. (2021). 5-year longitudinal study of clinical and patient-reported outcomes in acute anterior uveitis. Eye (Basingstoke), 35(2), 651-658. doi:10.1038/s41433-020-0937-6
Nash, P., Coates, L. C., Fleishaker, D., Kivitz, A. J., Mease, P. J., Gladman, D. D., et al. (2021). Safety and efficacy of tofacitinib up to 48 months in patients with active psoriatic arthritis: final analysis of the OPAL Balance long-term extension study. The Lancet Rheumatology, 3(4), e270-e283. doi:10.1016/S2665-9913(21)00010-2
Tillett, W., FitzGerald, O., Coates, L. C., Packham, J., Jadon, D. R., Massarotti, M., et al. (2021). Composite Measures for Routine Clinical Practice in Psoriatic Arthritis: Testing of Shortened Versions in a UK Multicenter Study. The Journal of rheumatology. Supplement, 97, 45-49. doi:10.3899/jrheum.201675
Coates, L. C., Baraliakos, X., Blanco, F. J., Blanco-Morales, E. A., Braun, J., Chandran, V., et al. (2021). The Phenotype of Axial Spondyloarthritis: Is It Dependent on HLA–B27 Status?. Arthritis Care and Research, 73(6), 856-860. doi:10.1002/acr.24174
Stober, C., Jadon, D. R., Armstrong, A. W., Chandran, V., de Wit, M., Helliwell, P. S., et al. (2021). Proceedings of the 2020 GRAPPA Collaborative Research Network (CRN) Meeting.. The Journal of rheumatology. Supplement, 97, 4-9. doi:10.3899/jrheum.201667
Leung, Y. Y., Orbai, A. M., Tillett, W., Ogdie, A., Eder, L., Goel, N., et al. (2021). Instruments Measuring Physical Function for Psoriatic Arthritis Endorsed at GRAPPA 2020 Annual Meeting: Updates of the GRAPPA-OMERACT Working Group. The Journal of rheumatology. Supplement, 97, 60-63. doi:10.3899/jrheum.201679
Tillett, W., FitzGerald, O., Coates, L. C., Packham, J., Jadon, D. R., Massarotti, M., et al. (2021). Composite Measures for Clinical Trials in Psoriatic Arthritis: Testing Pain and Fatigue Modifications in a UK Multicenter Study. The Journal of rheumatology. Supplement, 97, 39-44. doi:10.3899/jrheum.201674
Stober, C., Jadon, D. R., Armstrong, A. W., Chandran, V., de Wit, M., Helliwell, P. S., et al. (2021). Proceedings of the 2020 GRAPPA Collaborative Research Network (CRN) Meeting. The Journal of rheumatology. Supplement, 97, 4-9. doi:10.3899/jrheum.201667
Farkas, F., Ikumi, N., Elmamoun, M., Szentpetery, A., & FitzGerald, O. (2021). Comparison of composite measure remission targets in psoriatic arthritis. Journal of Rheumatology, 48(8), 1272-1278. doi:10.3899/jrheum.200556
Helliwell, P. S., Tillett, W., Waxman, R., Coates, L. C., Brooke, M., FitzGerald, O., et al. (2021). Evaluation and validation of a patient-completed psoriatic arthritis flare questionnaire. Journal of Rheumatology, 48(8), 1268-1271. doi:10.3899/jrheum.201317
Pennington, S. R., & FitzGerald, O. (2021). Early Origins of Psoriatic Arthritis: Clinical, Genetic and Molecular Biomarkers of Progression From Psoriasis to Psoriatic Arthritis. Frontiers in Medicine, 8. doi:10.3389/fmed.2021.723944
Dr Nicola Fletcher
Nader, D., Fletcher, N., Curley, G. F., & Kerrigan, S. W. (2021). SARS-CoV-2 uses major endothelial integrin avß3 to cause vascular dysregulation in-vitro during COVID-19. PLoS ONE, 16(6 June). doi:10.1371/journal.pone.0253347
Fahy, K., Weinhardt, V., Vihinen-Ranta, M., Fletcher, N., Skoko, D., Pereiro, E., et al. (2021). Compact Cell Imaging Device (CoCID) provides insights into the cellular origins of viral infections. JPhys Photonics, 3(3). doi:10.1088/2515-7647/abfc5a
Sala-Comorera, L., Reynolds, L. J., Martin, N. A., O'Sullivan, J. J., Meijer, W. G., & Fletcher, N. F. (2021). Decay of infectious SARS-CoV-2 and surrogates in aquatic environments. Water Research, 201. doi:10.1016/j.watres.2021.117090
Professor William Gallagher
Wilkinson, M., Sinclair, P., Dellatorre-Teixeira, L., Swan, P., Brennan, E., Moran, B., et al. (2020). The molecular effects of a high fat diet on endometrial tumour biology. Life, 10(9), 1-17. doi:10.3390/life10090188
Horgan, D., Ciliberto, G., Conte, P., Baldwin, D., Seijo, L., Montuenga, L. M., et al. (2020). Bringing Greater Accuracy to Europe's Healthcare Systems: The Unexploited Potential of Biomarker Testing in Oncology.. Biomedicine hub, 5(3), 182-223. doi:10.1159/000511209
Watson, W., Gonzalez, C., Russell, N., Azam, H., Corey, E., Morrissey, C., et al. (2020). Inhibition of serum response factor as a new strategy to overcome resistance to enzalutamide in prostate cancer. European Journal of Cancer, 138, S49. doi:10.1016/S0959-8049(20)31207-7
O’Farrell, A. C., Jarzabek, M. A., Lindner, A. U., Carberry, S., Conroy, E., Miller, I. S., et al. (2020). Implementing systems modelling and molecular imaging to predict the efficacy of BCL-2 inhibition in colorectal cancer patient-derived xenograft models. Cancers, 12(10), 1-19. doi:10.3390/cancers12102978
Slater, K., Heeran, A. B., Garcia-Mulero, S., Kalirai, H., Sanz-Pamplona, R., Rahman, A., et al. (2020). High cysteinyl leukotriene receptor 1 expression correlates with poor survival of uveal melanoma patients and cognate antagonist drugs modulate the growth, cancer secretome, and metabolism of uveal melanoma cells. Cancers, 12(10), 1-27. doi:10.3390/cancers12102950
Kearns, C., Burke, A., Gallagher, W. M., & Kelly, C. M. (2020). Patient-informed learning to assist development of personalised treatment care plans for breast cancer patients and survivors. European Journal of Cancer, 138, S69. doi:10.1016/S0959-8049(20)30712-7
Connor, K., Conroy, E., White, K., Shiels, L., Gallagher, W., Keek, S., et al. (2020). EXTH-30. EXPANDING THE UTILITY OF PRE-CLINICAL CONTRAST ENHANCED CT (CE-CT) FOR TUMOR DETECTION IN ORTHOTOPIC GBM MODELS USING RADIOMICS. Neuro-Oncology, 22(Supplement_2), ii93. doi:10.1093/neuonc/noaa215.384
Dwane, L., O'Connor, A. E., Das, S., Moran, B., Mulrane, L., Pinto-Fernandez, A., et al. (2020). A functional genomic screen identifies the deubiquitinase USP11 as a novel transcriptional regulator of ERa in breast cancer. Cancer Research, 80(22), 5076-5088. doi:10.1158/0008-5472.CAN-20-0214
Barat, A., Smeets, D., Moran, B., Zhang, W., Cao, S., Das, S., et al. (2020). Combination of variations in inflammation- and endoplasmic reticulum-associated genes as putative biomarker for bevacizumab response in KRAS wild-type colorectal cancer. Scientific Reports, 10(1). doi:10.1038/s41598-020-65869-2
Watson, R. W., Azam, H., Aura, C., Russell, N., McCormack, J., Corey, E., et al. (2020). Inhibition of serum response factor improves response to enzalutamide in prostate cancer. Cancers, 12(12), 1-13. doi:10.3390/cancers12123540
Collins, D. M., Madden, S. F., Gaynor, N., AlSultan, D., Le Gal, M., Eustace, A. J., et al. (2021). Effects of HER family-targeting tyrosine kinase inhibitors on antibody-dependent cell-mediated cytotoxicity in HER2-expressing breast cancer. Clinical Cancer Research, 27(3), 807-818. doi:10.1158/1078-0432.CCR-20-2007
Genua, F., Raghunathan, V., Jenab, M., Gallagher, W. M., & Hughes, D. J. (2021). The Role of Gut Barrier Dysfunction and Microbiome Dysbiosis in Colorectal Cancer Development. Frontiers in Oncology, 11. doi:10.3389/fonc.2021.626349
Eustace, A. J., Madden, S. F., Fay, J., Collins, D. M., Kay, E. W., Sheehan, K. M., et al. (2021). The role of infiltrating lymphocytes in the neo-adjuvant treatment of women with HER2-positive breast cancer. Breast Cancer Research and Treatment, 187(3), 635-645. doi:10.1007/s10549-021-06244-1
Fitzgerald, J., Higgins, D., Mazo Vargas, C., Watson, W., Mooney, C., Rahman, A., et al. (2021). Future of biomarker evaluation in the realm of artificial intelligence algorithms: Application in improved therapeutic stratification of patients with breast and prostate cancer. Journal of Clinical Pathology, 74(7), 429-434. doi:10.1136/jclinpath-2020-207351
Lynch, S. M., Russell, N. M., Barron, S., Wang, C. J. A., Loughman, T., Dynoodt, P., et al. (2021). Prognostic value of the 6-gene OncoMasTR test in hormone receptor–positive HER2-negative early-stage breast cancer: Comparative analysis with standard clinicopathological factors. European Journal of Cancer, 152, 78-89. doi:10.1016/j.ejca.2021.04.016
Egan, D., Moran, B., Wilkinson, M., Gallagher, W., Matias-Guiu, X., Kolch, W., et al. (2021). Abstract 658: CRABP2 - a novel biomarker for high risk endometrial cancer. Cancer Research, 81(13_Supplement), 658. doi:10.1158/1538-7445.am2021-658
Doherty, T., McKeever, S., Al-Attar, N., Murphy, T., Aura, C., Rahman, A., et al. (2021). Feature fusion of Raman chemical imaging and digital histopathology using machine learning for prostate cancer detection. Analyst, 146(13), 4195-4211. doi:10.1039/d1an00075f
Professor Declan Gilheany
Kavanagh, S. E., & Gilheany, D. G. (2020). Harnessing the Power of the Asymmetric Grignard Synthesis of Tertiary Alcohols: Ligand Development and Improved Scope Exemplified by One-Step Gossonorol Synthesis. Organic Letters, 22(21), 8198-8203. doi:10.1021/acs.orglett.0c02629
Gilheany, D., Nikitin, K., & Vetter, A. (2021). Wittig Ole?nation Using Phosphonium Ion-Pair Reagents Incorporating an Endogenous Base. Organic Letters, 23, 1457-1462. doi:10.1021/acs.orglett.1c00133
Vetter, A. C., Gilheany, D. G., & Nikitin, K. (2021). Wittig Olefination Using Phosphonium Ion-Pair Reagents Incorporating an Endogenous Base. Organic Letters, 23(4), 1457-1462. doi:10.1021/acs.orglett.1c00133
Dr Jeffrey Glennon
Balia, C., Carucci, S., Milone, A., Romaniello, R., Valente, E., Potenza, C., et al. (2020). P.209 The neuropsychological characterization of aggressive behaviour in children and adolescents with CD/ODD: preliminary results from a multicentric case-control study (MATRICS_consortium). European Neuropsychopharmacology, 40, S119-S120. doi:10.1016/j.euroneuro.2020.09.157
De Korte, M. W. P., van den Berk-Smeekens, I., van Dongen-Boomsma, M., Oosterling, I. J., Den Boer, J. C., Barakova, E. I., et al. (2020). Self-initiations in young children with autism during Pivotal Response Treatment with and without robot assistance. Autism, 24(8), 2117-2128. doi:10.1177/1362361320935006
van den Berk-Smeekens, I., van Dongen-Boomsma, M., De Korte, M. W. P., Den Boer, J. C., Oosterling, I. J., Peters-Scheffer, N. C., et al. (2020). Adherence and acceptability of a robot-assisted Pivotal Response Treatment protocol for children with autism spectrum disorder. Scientific Reports, 10(1). doi:10.1038/s41598-020-65048-3
van Otterdijk, M. T. H., de Korte, M. W. P., van den Berk-Smeekens, I., Hendrix, J., van Dongen-Boomsma, M., Den Boer, J. C., et al. (2020). The effects of long-term child–robot interaction on the attention and the engagement of children with autism. Robotics, 9(4), 1-15. doi:10.3390/robotics9040079
van As, D., Okkersen, K., Bassez, G., Schoser, B., Lochmüller, H., Glennon, J. C., et al. (2021). Clinical Outcome Evaluations and CBT Response Prediction in Myotonic Dystrophy. Journal of neuromuscular diseases, 8(6), 1031-1046. doi:10.3233/JND-210634
Driessen, J. M. A., van Baar, J. M., Sanfey, A. G., Glennon, J. C., & Brazil, I. A. (2021). Moral Strategies and Psychopathic Traits. Journal of Abnormal Psychology, 130(5), 550-561. doi:10.1037/abn0000675
van den Berk-Smeekens, I., de Korte, M. W. P., van Dongen-Boomsma, M., Oosterling, I. J., den Boer, J. C., Barakova, E. I., et al. (2021). Pivotal Response Treatment with and without robot-assistance for children with autism: a randomized controlled trial. European Child and Adolescent Psychiatry. doi:10.1007/s00787-021-01804-8
van Heukelum, S., Tulva, K., Geers, F. E., van Dulm, S., Ruisch, I. H., Mill, J., et al. (2021). A central role for anterior cingulate cortex in the control of pathological aggression. Current Biology, 31(11), 2321-2333.e5. doi:10.1016/j.cub.2021.03.062
van Heukelum, S., Geers, F. E., Tulva, K., van Dulm, S., Beckmann, C. F., Buitelaar, J. K., et al. (2021). Structural degradation in midcingulate cortex is associated with pathological aggression in mice. Brain Sciences, 11(7). doi:10.3390/brainsci11070868
Werhahn, J. E., Mohl, S., Willinger, D., Smigielski, L., Roth, A., Hofstetter, C., et al. (2021). Aggression subtypes relate to distinct resting state functional connectivity in children and adolescents with disruptive behavior. European Child and Adolescent Psychiatry, 30(8), 1237-1249. doi:10.1007/s00787-020-01601-9
Kroon, R. H. M. J. M., Kalf, J. G., de Swart, B. J. M., van der Sluijs, B. M., Glennon, J. C., Raz, V., et al. (2021). Longitudinal Assessment of Strength, Functional Capacity, Oropharyngeal Function, and Quality of Life in Oculopharyngeal Muscular Dystrophy. . Neurology, 10.1212/WNL.0000000000012640. doi:10.1212/wnl.0000000000012640
Professor Catherine Godson
Serhan, C. N., Gupta, S. K., Perretti, M., Godson, C., Brennan, E., Li, Y., et al. (2020). The Atlas of Inflammation Resolution (AIR).. Molecular aspects of medicine, 74, 100894. doi:10.1016/j.mam.2020.100894
Perretti, M., & Godson, C. (2020). Formyl peptide receptor type 2 agonists to kick-start resolution pharmacology. British Journal of Pharmacology, 177(20), 4595-4600. doi:10.1111/bph.15212
Benson, K. A., Murray, S. L., Doyle, R., Doyle, B., Dorman, A. M., Sadlier, D., et al. (2020). Diagnostic utility of genetic testing in patients undergoing renal biopsy. Cold Spring Harbor Molecular Case Studies, 6(5). doi:10.1101/MCS.A005462
Galvão, I., Melo, E. M., de Oliveira, V. L. S., Vago, J. P., Queiroz-Junior, C., de Gaetano, M., et al. (2021). Therapeutic potential of the FPR2/ALX agonist AT-01-KG in the resolution of articular inflammation. Pharmacological Research, 165. doi:10.1016/j.phrs.2021.105445
Maciuszek, M., Cacace, A., Brennan, E., Godson, C., & Chapman, T. M. (2021). Recent advances in the design and development of formyl peptide receptor 2 (FPR2/ALX) agonists as pro-resolving agents with diverse therapeutic potential. European Journal of Medicinal Chemistry, 213. doi:10.1016/j.ejmech.2021.113167
Oggero, S., de Gaetano, M., Marcone, S., Fitzsimons, S., Pinto, A. L., Ikramova, D., et al. (2021). Extracellular vesicles from monocyte/platelet aggregates modulate human atherosclerotic plaque reactivity. Journal of Extracellular Vesicles, 10(6). doi:10.1002/jev2.12084
De Gaetano, M., Tighe, C., Gahan, K., Zanetti, A., Chen, J., Newson, J., et al. (2021). Asymmetric Synthesis and Biological Screening of Quinoxaline-Containing Synthetic Lipoxin A<inf>4</inf>Mimetics (QNX-sLXms). Journal of Medicinal Chemistry, 64(13), 9193-9216. doi:10.1021/acs.jmedchem.1c00403
Andrews, D., & Godson, C. (2021). Lipoxins and synthetic lipoxin mimetics: Therapeutic potential in renal diseases. Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids, 1866(8). doi:10.1016/j.bbalip.2021.158940
Professor Stephen Gordon
Lundahl, M., Lynch, D. M., Barnes, D., McSweeney, L., Gorman, A., Lebre, F., et al. (2020). Mycobacterial para-Hydroxybenzoic Acid-Derivatives (pHBADs) and Related Structures Induce Macrophage Innate Memory. ACS Chemical Biology, 15(9), 2415-2421. doi:10.1021/acschembio.0c00378
Shaughnessy, R. G., Farrell, D., Stojkovic, B., Browne, J. A., Kenny, K., & Gordon, S. V. (2020). Identification of microRNAs in bovine faeces and their potential as biomarkers of Johne’s Disease. Scientific Reports, 10(1). doi:10.1038/s41598-020-62843-w
Mata, E., Farrell, D., Ma, R., Uranga, S., Gomez, A. B., Monzon, M., et al. (2020). Independent genomic polymorphisms in the PknH serine threonine kinase locus during evolution of the Mycobacterium tuberculosis Complex affect virulence and host preference. PLoS Pathogens, 16(12). doi:10.1371/journal.ppat.1009061
Kapalamula, T. F., Thapa, J., Akapelwa, M. L., Hayashida, K., Gordon, S. V., Hang’ombe, B. M., et al. (2021). Development of a loop-mediated isothermal amplification (Lamp) method for specific detection of mycobacterium bovis. PLoS Neglected Tropical Diseases, 15(1), 1-15. doi:10.1371/journal.pntd.0008996
Queval, C. J., Fearns, A., Botella, L., Smyth, A., Schnettger, L., Mitermite, M., et al. (2021). Macrophage-specific responses to humanand animal-adapted tubercle bacilli reveal pathogen and host factors driving multinucleated cell formation. PLoS Pathogens, 17(3). doi:10.1371/journal.ppat.1009410
Cahill, C., O’connell, F., Gogan, K. M., Cox, D. J., Basdeo, S. A., O’sullivan, J., et al. (2021). The iron chelator desferrioxamine increases the efficacy of bedaquiline in primary human macrophages infected with bcg. International Journal of Molecular Sciences, 22(6), 1-15. doi:10.3390/ijms22062938
Taylor, E., Beckmann, M., Markey, B., Gordon, S., Hewinson, G., Rooke, D., & Mur, L. (2021). 182 Metabolomic changes in Mycobacterium avium subsp. Paratuberculosis (MAP) inoculated Holstein-Friesian cattle suggest metabolites indicative of MAP exposure. Animal - science proceedings, 12(1), 152. doi:10.1016/j.anscip.2021.03.183
McLoughlin, K. E., Correia, C. N., Browne, J. A., Magee, D. A., Nalpas, N. C., Rue-Albrecht, K., et al. (2021). RNA-Seq Transcriptome Analysis of Peripheral Blood From Cattle Infected With Mycobacterium bovis Across an Experimental Time Course. Frontiers in Veterinary Science, 8. doi:10.3389/fvets.2021.662002
Roycroft, E., Fitzgibbon, M. M., Kelly, D. M., Scully, M., McLaughlin, A. M., Flanagan, P. R., et al. (2021). The largest prison outbreak of TB in Western Europe investigated using whole-genome sequencing. International Journal of Tuberculosis and Lung Disease, 25(6), 491-497. doi:10.5588/ijtld.21.0033
Remot, A., Carreras, F., Coupé, A., Doz-Deblauwe, É., Boschiroli, M. L., Browne, J. A., et al. (2021). Mycobacterial Infection of Precision-Cut Lung Slices Reveals Type 1 Interferon Pathway Is Locally Induced by Mycobacterium bovis but Not M. tuberculosis in a Cattle Breed. Frontiers in Veterinary Science, 8. doi:10.3389/fvets.2021.696525
Professor Aoife Gowen
Xu, J. L., Dorrepaal, R. M., Martinez-Gonzalez, J., Tsenkova, R., & Gowen, A. A. (2020). Near-infrared multivariate model transfer for quantification of different hydrogen bonding species in aqueous systems. Journal of Chemometrics, 34(9). doi:10.1002/cem.3274
Mishra, P., Polder, G., Gowen, A., Rutledge, D. N., & Roger, J. M. (2020). Utilising variable sorting for normalisation to correct illumination effects in close-range spectral images of potato plants. Biosystems Engineering, 197, 318-323. doi:10.1016/j.biosystemseng.2020.07.010
Zhu, H., Gowen, A., Feng, H., Yu, K., & Xu, J. L. (2020). Deep spectral-spatial features of near infrared hyperspectral images for pixel-wise classification of food products. Sensors (Switzerland), 20(18), 1-20. doi:10.3390/s20185322
Martínez-González, J. A., Nandi, P. K., English, N. J., & Gowen, A. A. (2020). Infrared spectra and density of states at the interface between water and protein: Insights from classical molecular dynamics. Chemical Physics Letters, 757. doi:10.1016/j.cplett.2020.137867
Ferone, M., Gowen, A., Fanning, S., & Scannell, A. G. M. (2020). Microbial detection and identification methods: Bench top assays to omics approaches. Comprehensive Reviews in Food Science and Food Safety, 19(6), 3106-3129. doi:10.1111/1541-4337.12618
Swanson, A., Herrero-Langreo, A., & Gowen, A. (2021). Comparison of portable spectral imaging (443-726 nm) and RGB imaging for predicting poultry product “use-by” status through packaging film. Journal of Spectral Imaging, 10. doi:10.1255/jsi.2021.a6
Martinez-Gonzalez, J. A., English, N. J., & Gowen, A. A. (2021). Molecular simulation of water adsorption on hydrophilic and hydrophobic surfaces of silicon: IR-spectral explorations. Molecular Simulation, 47(8), 666-673. doi:10.1080/08927022.2021.1899173
Xu, J. L., Hugelier, S., Zhu, H., & Gowen, A. A. (2021). Deep learning for classification of time series spectral images using combined multi-temporal and spectral features. Analytica Chimica Acta, 1143, 9-20. doi:10.1016/j.aca.2020.11.018
Xu, J. L., & Gowen, A. A. (2021). Time series Fourier transform infrared spectroscopy for characterization of water vapor sorption in hydrophilic and hydrophobic polymeric films. Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy, 250. doi:10.1016/j.saa.2020.119371
Doherty, T., McKeever, S., Al-Attar, N., Murphy, T., Aura, C., Rahman, A., et al. (2021). Feature fusion of Raman chemical imaging and digital histopathology using machine learning for prostate cancer detection. Analyst, 146(13), 4195-4211. doi:10.1039/d1an00075f
Professor Andrew Green
Kaplanis, J., Samocha, K. E., Wiel, L., Zhang, Z., Arvai, K. J., Eberhardt, R. Y., et al. (2020). Evidence for 28 genetic disorders discovered by combining healthcare and research data. Nature, 586(7831), 757-762. doi:10.1038/s41586-020-2832-5
Kennedy, J., Goudie, D., Blair, E., Chandler, K., Joss, S., McKay, V., et al. (2020). Correction: KAT6A Syndrome: genotype–phenotype correlation in 76 patients with pathogenic KAT6A variants (Genetics in Medicine, (2019), 21, 4, (850-860), 10.1038/s41436-018-0259-2). Genetics in Medicine, 22(11), 1920. doi:10.1038/s41436-020-00944-7
MacKenzie, K. C., de Graaf, B. M., Syrimis, A., Zhao, Y., Brosens, E., Mancini, G. M. S., et al. (2020). Goldberg–Shprintzen syndrome is determined by the absence, or reduced expression levels, of KIFBP. Human Mutation, 41(11), 1906-1917. doi:10.1002/humu.24097
Darlow, J. M., Dobson, M. G., Green, A. J., Puri, P., & Barton, D. E. (2020). Investigation of DNA variants specific to ROBO2 Isoform ‘a’ in Irish vesicoureteric reflux patients reveals marked CpG island variation. Scientific Reports, 10(1). doi:10.1038/s41598-020-58818-6
Rio-Machin, A., Vulliamy, T., Hug, N., Walne, A., Tawana, K., Cardoso, S., et al. (2020). The complex genetic landscape of familial MDS and AML reveals pathogenic germline variants. Nature Communications, 11(1). doi:10.1038/s41467-020-14829-5
Foley, R., Duignan, S., McArdle, L., Betts, D. R., Green, A., & McMahon, C. J. (2021). Nicolaides-Baraitser syndrome in a patient with hypertrophic cardiomyopathy and SMARCA2 gene deletion. Cardiology in the Young. doi:10.1017/S1047951121003826
Brunet, T., McWalter, K., Mayerhanser, K., Anbouba, G. M., Armstrong-Javors, A., Bader, I., et al. (2021). Defining the genotypic and phenotypic spectrum of X-linked MSL3-related disorder. Genetics in Medicine, 23(2), 384-395. doi:10.1038/s41436-020-00993-y
Linnane, N., Green, A., & McMahon, C. J. (2021). An unusual case of tetralogy of Fallot with an absent pulmonary valve associated with a retro-aortic innominate vein in a patient with a 16p12.2 microdeletion. Cardiology in the Young, 31(5), 836-837. doi:10.1017/S1047951120004667
Allen, J., Zareen, Z., Doyle, S., Whitla, L., Afzal, Z., Stack, M., et al. (2021). Multi-Organ Dysfunction in Cerebral Palsy. Frontiers in Pediatrics, 9. doi:10.3389/fped.2021.668544
Professor Patrick Guiry
Cunningham, L., Wang, Y., Nottingham, C., Pagsulingan, J., Jaouen, G., McGlinchey, M. J., & Guiry, P. J. (2020). Enantioselective Synthesis of Planar Chiral Ferrocifens that Show Chiral Discrimination in Antiproliferative Activity on Breast Cancer Cells. ChemBioChem, 21(20), 2974-2981. doi:10.1002/cbic.202000311
Cunningham, L., Benson, A., & Guiry, P. J. (2020). Recent developments in the synthesis and applications of chiral ferrocene ligands and organocatalysts in asymmetric catalysis. Organic and Biomolecular Chemistry, 18(46), 9329-9370. doi:10.1039/d0ob01933j
Cunningham, L., Benson, A., & Guiry, P. J. (2020). Erratum: Recent developments in the synthesis and applications of chiral ferrocene ligands and organocatalysts in asymmetric catalysis (Organic and Biomolecular Chemistry (2020) DOI: 10.1039/d0ob01933j). Organic and Biomolecular Chemistry, 18(46), 98538. doi:10.1039/d0ob90160a
Galvão, I., Melo, E. M., de Oliveira, V. L. S., Vago, J. P., Queiroz-Junior, C., de Gaetano, M., et al. (2021). Therapeutic potential of the FPR2/ALX agonist AT-01-KG in the resolution of articular inflammation. Pharmacological Research, 165. doi:10.1016/j.phrs.2021.105445
Vivek Kumar, S., Yen, A., Lautens, M., & Guiry, P. J. (2021). Catalytic asymmetric transformations of oxa- And azabicyclic alkenes. Chemical Society Reviews, 50(5), 3013-3093. doi:10.1039/d0cs00702a
Pàmies, O., Margalef, J., Cañellas, S., James, J., Judge, E., Guiry, P. J., et al. (2021). Recent Advances in Enantioselective Pd-Catalyzed Allylic Substitution: From Design to Applications. Chemical Reviews, 121(8), 4373-4505. doi:10.1021/acs.chemrev.0c00736
Breheny, J., Kingston, C., Doran, R., Anes, J., Martins, M., Fanning, S., & Guiry, P. J. (2021). Investigation of the anti-methicillin-resistant staphylococcus aureus activity of (+)-tanikolide-and (+)-malyngolide-based analogues prepared by asymmetric synthesis. International Journal of Molecular Sciences, 22(12). doi:10.3390/ijms22126400
Connon, R., Roche, B., Rokade, B. V., & Guiry, P. J. (2021). Further Developments and Applications of Oxazoline-Containing Ligands in Asymmetric Catalysis. Chemical Reviews, 121(11), 6373-6521. doi:10.1021/acs.chemrev.0c00844
Meaney, K., Goddard, R., Bronger, R. P. J., & Guiry, P. J. (2021). The preparation of ferrocene-containing phosphinamine ligands possessing central and planar chirality and their application in palladium-catalysed allylic substitution. Tetrahedron, 90. doi:10.1016/j.tet.2021.132088
De Gaetano, M., Tighe, C., Gahan, K., Zanetti, A., Chen, J., Newson, J., et al. (2021). Asymmetric Synthesis and Biological Screening of Quinoxaline-Containing Synthetic Lipoxin A<inf>4</inf>Mimetics (QNX-sLXms). Journal of Medicinal Chemistry, 64(13), 9193-9216. doi:10.1021/acs.jmedchem.1c00403

Dr Melinda Halasz
Kavanagh, E. L., Halasz, M., Dowling, P., Withers, J., Lindsay, S., Higgins, M. J., et al. (2021). N-Linked glycosylation profiles of therapeutic induced senescent (TIS) triple negative breast cancer cells (TNBC) and their extracellular vesicle (EV) progeny. Molecular Omics, 17(1), 72-85. doi:10.1039/d0mo00017e
Catozzi, S., Halasz, M., & Kiel, C. (2021). Predicted 'wiring landscape' of Ras-effector interactions in 29 human tissues.. NPJ systems biology and applications, 7(1), 10. doi:10.1038/s41540-021-00170-0
Krstic, A., Konietzny, A., Halasz, M., Cain, P., Oppermann, U., Kolch, W., & Duffy, D. J. (2021). A Chemo-Genomic Approach Identifies Diverse Epigenetic Therapeutic Vulnerabilities in MYCN-Amplified Neuroblastoma. Frontiers in Cell and Developmental Biology, 9. doi:10.3389/fcell.2021.612518
Assoc Professor Chandralal Hewage
Timmons, P. B., & Hewage, C. M. (2020). HAPPENN is a novel tool for hemolytic activity prediction for therapeutic peptides which employs neural networks. Scientific Reports, 10(1). doi:10.1038/s41598-020-67701-3
Timmons, P. B., & Hewage, C. M. (2021). ENNAACT is a novel tool which employs neural networks for anticancer activity classification for therapeutic peptides. Biomedicine and Pharmacotherapy, 133. doi:10.1016/j.biopha.2020.111051
Timmons, P. B., & Hewage, C. (2021). ENNAVIA is an innovative new method which employs neural networks for antiviral and anti-coronavirus activity prediction for therapeutic peptides. doi:10.1101/2021.03.25.436982
Timmons, P. B., & Hewage, C. (2021). APPTEST is an innovative new method for the automatic prediction of peptide tertiary structures. doi:10.1101/2021.03.09.434600
Timmons, P. B., & Hewage, C. M. (2021). Conformation and membrane interaction studies of the potent antimicrobial and anticancer peptide palustrin-Ca. doi:10.1101/2021.07.22.453375
Professor Desmond Higgins
Sievers, F., & Higgins, D. G. (2021). The Clustal Omega Multiple Alignment Package. Unknown Journal, 2231, 3-16. doi:10.1007/978-1-0716-1036-7_1
Schwarzl, T., Keogh, A., Shaw, G., Krstic, A., Clayton, E., Murphy, M., et al. (2021). Transcriptional profiling of early differentiation of primary human mesenchymal stem cells into chondrocytes. doi:10.1101/2021.08.13.454287
Professor Suzi Jarvis
Hardie, P., Darley, A., Redmond, C., Lafferty, A., & Jarvis, S. (2021). Interpersonal and communication skills development in nursing preceptorship education and training programmes: a scoping review protocol.. HRB open research, 4, 9. doi:10.12688/hrbopenres.13201.1
Dr Rory Johnson
Bailey, M. H., Meyerson, W. U., Dursi, L. J., Wang, L. B., Dong, G., Liang, W. W., et al. (2020). Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications, 11(1). doi:10.1038/s41467-020-18151-y
Reyna, M. A., Haan, D., Paczkowska, M., Verbeke, L. P. C., Vazquez, M., Kahraman, A., et al. (2020). Pathway and network analysis of more than 2500 whole cancer genomes. Nature Communications, 11(1). doi:10.1038/s41467-020-14367-0
Carlevaro-Fita, J., Lanzós, A., Feuerbach, L., Hong, C., Mas-Ponte, D., Pedersen, J. S., et al. (2020). Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis. Communications Biology, 3(1). doi:10.1038/s42003-019-0741-7
Paczkowska, M., Barenboim, J., Sintupisut, N., Fox, N. S., Zhu, H., Abd-Rabbo, D., et al. (2020). Integrative pathway enrichment analysis of multivariate omics data. Nature Communications, 11(1). doi:10.1038/s41467-019-13983-9
Shuai, S., Abascal, F., Amin, S. B., Bader, G. D., Bandopadhayay, P., Barenboim, J., et al. (2020). Combined burden and functional impact tests for cancer driver discovery using DriverPower. Nature Communications, 11(1). doi:10.1038/s41467-019-13929-1
Li, C. H., Prokopec, S. D., Sun, R. X., Yousif, F., Schmitz, N., Al-Shahrour, F., et al. (2020). Sex differences in oncogenic mutational processes. Nature Communications, 11(1). doi:10.1038/s41467-020-17359-2
Carbonell Sala, S., Uszczynska-Ratajczak, B., Lagarde, J., Johnson, R., & Guigó, R. (2021). Annotation of Full-Length Long Noncoding RNAs with Capture Long-Read Sequencing (CLS).. Methods in molecular biology (Clifton, N.J.), 2254, 133-159. doi:10.1007/978-1-0716-1158-6_9
Bosch-Guiteras, N., Uroda, T., Guillen-Ramirez, H. A., Riedo, R., Gazdhar, A., Esposito, R., et al. (2021). Enhancing CRISPR deletion via pharmacological delay of DNA-PKcs. Genome Research, 31(3), 461-471. doi:10.1101/GR.265736.120
Frankish, A., Diekhans, M., Jungreis, I., Lagarde, J., Loveland, J. E., Mudge, J. M., et al. (2021). GENCODE 2021. Nucleic Acids Research, 49(D1), D916-D923. doi:10.1093/nar/gkaa1087
Vancura, A., Lanzós, A., Bosch-Guiteras, N., Esteban, M. T., Gutierrez, A. H., Haefliger, S., & Johnson, R. (2021). Cancer LncRNA Census 2 (CLC2): an enhanced resource reveals clinical features of cancer lncRNAs.. NAR cancer, 3(2), zcab013. doi:10.1093/narcan/zcab013
Professor Michael Keane
O'Carroll, O., Cullen, J., Fabre, A., Murphy, D. J., Dodd, J. D., Keane, M. P., & McCarthy, C. (2020). Phenotypic Variation of Birt-Hogg-Dubé Syndrome Within a Single Family. Chest, 158(4), 1790-1791. doi:10.1016/j.chest.2020.04.065
McCarthy, C., Savinelli, S., Feeney, E. R., Butler, M. W., O'Broin, C., Ryan, S., et al. (2020). Tocilizumab therapy in individuals with COVID-19 infection and hyperinflammatory state. Respirology, 25(10), 1090-1094. doi:10.1111/resp.13912
McCarthy, C., Keane, M. P., & Fabre, A. (2020). Lipid-laden macrophages are not diagnostic of pulmonary alveolar proteinosis syndrome and can indicate lung injury. American Journal of Respiratory and Critical Care Medicine, 208(8), 1197-1198. doi:10.1164/rccm.202005-1880LE
Fleming, H., Clifford, S. M., Haughey, A., MacDermott, R., McVeigh, N., Healy, G. M., et al. (2020). Differentiating combined pulmonary fibrosis and emphysema from pure emphysema: utility of late gadolinium-enhanced MRI. European Radiology Experimental, 4(1). doi:10.1186/s41747-020-00187-w
Worrell, J. C., Walsh, S. M., Fabre, A., Kane, R., Hinz, B., & Keane, M. P. (2020). CXCR3A promotes the secretion of the antifibrotic decoy receptor sIL-13Ra2 by pulmonary fibroblasts. American Journal of Physiology - Cell Physiology, 319(6), C1059-C1069. doi:10.1152/ajpcell.00076.2020
Kelly, A., Keane, M. P., Keane, D., Dodd, J. D., Murphy, D. J., & McCarthy, C. (2021). Sequential FDG-PET in the management of multiorgan sarcoidosis. Thorax, 76(3), 316-317. doi:10.1136/thoraxjnl-2020-215202
Gaffney, B., O’Carroll, O., Conroy, F., Butler, M. W., Keane, M. P., & McCarthy, C. (2021). The impact of COVID-19 on clinical education of internal medicine trainees. Irish Journal of Medical Science, 190(2), 845-847. doi:10.1007/s11845-020-02350-z
Shah, W., O'Carroll, O., Keane, M. P., & McCarthy, C. (2021). Provision of essential bronchoscopy during COVID-19 pandemic. Respirology, 26(5), 509-510. doi:10.1111/resp.14034
Jouida, A., McCarthy, C., Fabre, A., & Keane, M. P. (2021). Exosomes: a new perspective in EGFR-mutated lung cancer. Cancer and Metastasis Reviews, 40(2), 589-601. doi:10.1007/s10555-021-09962-6
Hawkins, P., Chawke, L., Cormican, L., Wikenheiser-Brokamp, K. A., Fabre, A., Keane, M. P., & McCarthy, C. (2021). Autoimmune pulmonary alveolar proteinosis: a discrepancy between symptoms and CT findings. The Lancet, 398(10296), e7. doi:10.1016/S0140-6736(21)01254-X
Professor Breandán Kennedy
Slater, K., Heeran, A. B., Garcia-Mulero, S., Kalirai, H., Sanz-Pamplona, R., Rahman, A., et al. (2020). High cysteinyl leukotriene receptor 1 expression correlates with poor survival of uveal melanoma patients and cognate antagonist drugs modulate the growth, cancer secretome, and metabolism of uveal melanoma cells. Cancers, 12(10), 1-27. doi:10.3390/cancers12102950
Kennedy, S. A., Morrissey, M. E., Dunne, M. R., O'Connell, F., Butler, C. T., Cathcart, M. C., et al. (2020). Combining 1,4-dihydroxy quininib with Bevacizumab/FOLFOX alters angiogenic and inflammatory secretions in ex vivo colorectal tumors. BMC Cancer, 20(1). doi:10.1186/s12885-020-07430-y
Buckley, A. M., Dunne, M. R., Morrissey, M. E., Kennedy, S. A., Nolan, A., Davern, M., et al. (2020). Real-time metabolic profiling of oesophageal tumours reveals an altered metabolic phenotype to different oxygen tensions and to treatment with Pyrazinib. Scientific Reports, 10(1). doi:10.1038/s41598-020-68777-7
Sundaramurthi, H., García-Mulero, S., Slater, K., Marcone, S., Piulats, J., Watson, W., et al. (2021). Inhibition of Metastatic Uveal Melanoma Cell Proliferation by the Histone Deacetylase 6 Inhibitor, Ricolinostat, is Linked to Altered Microphthalmia-associated Transcription Factor and Phospho-ERK Expression. doi:10.1101/2021.10.28.466226
Sánchez, A. G., Álvarez, Y., Colligris, B., & Kennedy, B. (2021). Affordable and Effective Optokinetic Response Methods to Assess Visual Acuity and Contrast Sensitivity in Larval to Juvenile Zebrafish. doi:10.1101/2021.04.26.441419
Campiani, G., Cavella, C., Osko, J. D., Brindisi, M., Relitti, N., Brogi, S., et al. (2021). Harnessing the Role of HDAC6 in Idiopathic Pulmonary Fibrosis: Design, Synthesis, Structural Analysis, and Biological Evaluation of Potent Inhibitors. Journal of Medicinal Chemistry, 64(14), 9960-9988. doi:10.1021/acs.jmedchem.1c00184
Gómez Sánchez, A., Álvarez, Y., Colligris, B., & Kennedy, B. (2021). Affordable and effective optokinetic response methods to assess visual acuity and contrast sensitivity in larval to juvenile zebrafish. doi:10.12688/openreseurope.13923.1
Professor Boris Kholodenko
Kennedy, S. A., Jarboui, M. A., Srihari, S., Raso, C., Bryan, K., Dernayka, L., et al. (2020). Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRAS<sup>G13D</sup>. Nature Communications, 11(1). doi:10.1038/s41467-019-14224-9
Seidel, C., Zhernovkov, V., Cassidy, H., Kholodenko, B., Matallanas, D., Cosnier, F., & Gaté, L. (2021). Inhaled multi-walled carbon nanotubes differently modulate global gene and protein expression in rat lungs. Nanotoxicology, 15(2), 238-256. doi:10.1080/17435390.2020.1851418
Rukhlenko, O., Kholodenko, B. N., & Kolch, W. (2021). Systems biology approaches to macromolecules: the role of dynamic protein assemblies in information processing. Current Opinion in Structural Biology, 67, 61-68. doi:10.1016/j.sbi.2020.09.007
Kholodenko, B. N., Rauch, N., Kolch, W., & Rukhlenko, O. S. (2021). A systematic analysis of signaling reactivation and drug resistance. Cell Reports, 35(8). doi:10.1016/j.celrep.2021.109157
Kholodenko, B. N., & Okada, M. (2021). Reengineering proteinphosphorylation switches. Science, 373(6550), 25-26. doi:10.1126/science.abj5028
Rukhlenko, O. S., & Kholodenko, B. N. (2021). Modeling the nonlinear dynamics of intracellular signaling networks. Bio-protocol, 11(14). doi:10.21769/BioProtoc.4089
Chatterjee, S., Yabaji, S. M., Rukhlenko, O. S., Bhattacharya, B., Waligurski, E., Vallavoju, N., et al. (2021). Channeling macrophage polarization by rocaglates increases macrophage resistance to Mycobacterium tuberculosis. iScience, 24(8). doi:10.1016/j.isci.2021.102845
Professor Ulla Knaus
Stenke, E., Aviello, G., Singh, A., Martin, S., Winter, D., Sweeney, B., et al. (2020). NADPH oxidase 4 is protective and not fibrogenic in intestinal inflammation. Redox Biology, 37. doi:10.1016/j.redox.2020.101752
Knaus, U. G. (2021). Oxidants in Physiological Processes. Unknown Journal, 264, 27-47. doi:10.1007/164_2020_380
Dumas, A., & Knaus, U. G. (2021). Raising the ‘Good’ Oxidants for Immune Protection. Frontiers in Immunology, 12. doi:10.3389/fimmu.2021.698042
Professor Sabine Koelle
Camara Pirez, M., Steele, H., Reese, S., & Kölle, S. (2020). Bovine sperm-oviduct interactions are characterized by specific sperm behaviour, ultrastructure and tubal reactions which are impacted by sex sorting. Scientific Reports, 10(1). doi:10.1038/s41598-020-73592-1
Steele, H., Makri, D., Maalouf, W. E., Reese, S., & Kölle, S. (2020). Bovine Sperm Sexing Alters Sperm Morphokinetics and Subsequent Early Embryonic Development. Scientific Reports, 10(1). doi:10.1038/s41598-020-63077-6
Scully, D. M., Campion, D., McCartney, F., Dulohery, K., Reese, S., & Kölle, S. (2021). Cystic ovary disease impairs transport speed, smooth muscle contraction, and epithelial ion transport in the bovine oviduct. Molecular Reproduction and Development, 88(8), 558-570. doi:10.1002/mrd.23521
Professor Walter Kolch
Herrero, A., Reis-Cardoso, M., Jiménez-Gómez, I., Doherty, C., Agudo-Ibañez, L., Pinto, A., et al. (2020). Characterisation of HRas local signal transduction networks using engineered site-specific exchange factors. Small GTPases, 11(5), 371-383. doi:10.1080/21541248.2017.1406434
Kennedy, S. A., Jarboui, M. A., Srihari, S., Raso, C., Bryan, K., Dernayka, L., et al. (2020). Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRAS<sup>G13D</sup>. Nature Communications, 11(1). doi:10.1038/s41467-019-14224-9
Novácek, V., McGauran, G., Matallanas, D., Blanco, A. V., Conca, P., Muñoz, E., et al. (2020). Accurate prediction of kinase-substrate networks using knowledge graphs. PLoS Computational Biology, 16(12). doi:10.1371/journal.pcbi.1007578
Seoighe, C., Bracken, A. P., Buckley, P., Doran, P., Green, R., Healy, S., et al. (2020). The future of genomics in Ireland - focus on genomics for health.. HRB open research, 3, 89. doi:10.12688/hrbopenres.13187.1
Nolan, A., Aboud, N., Kolch, W., & Matallanas, D. (2021). Hidden Targets in RAF Signalling Pathways to Block Oncogenic RAS Signalling. doi:10.20944/preprints202103.0510.v1
Kiel, C., Matallanas, D., & Kolch, W. (2021). The Ins and Outs of RAS Effector Complexes. doi:10.20944/preprints202101.0220.v1
Conroy, M., Cowzer, D., Kolch, W., & Duffy, A. G. (2021). Emerging RAS-directed therapies for cancer. Cancer Drug Resistance, 4(3), 543-558. doi:10.20517/cdr.2021.07
Schwarzl, T., Keogh, A., Shaw, G., Krstic, A., Clayton, E., Murphy, M., et al. (2021). Transcriptional profiling of early differentiation of primary human mesenchymal stem cells into chondrocytes. doi:10.1101/2021.08.13.454287
Iglesias-Martinez, L., De Kegel, B., & Kolch, W. (2021). KBoost: a new method to infer gene regulatory networks from gene expression data. doi:10.1101/2021.04.01.438059
Han, J. Z. R., Hastings, J. F., Phimmachanh, M., Fey, D., Kolch, W., & Croucher, D. R. (2021). Personalized medicine for neuroblastoma: Moving from static genotypes to dynamic simulations of drug response. Journal of Personalized Medicine, 11(5). doi:10.3390/jpm11050395
Kiel, C., Matallanas, D., & Kolch, W. (2021). The ins and outs of ras effector complexes. Biomolecules, 11(2), 1-29. doi:10.3390/biom11020236
Kreileder, M., Barrett, I., Bendtsen, C., Brennan, D., & Kolch, W. (2021). Signaling Dynamics Regulating Crosstalks between T-Cell Activation and Immune Checkpoints. Trends in Cell Biology, 31(3), 224-235. doi:10.1016/j.tcb.2020.12.001
Nolan, A. A., Aboud, N. K., Kolch, W., & Matallanas, D. (2021). Hidden targets in raf signalling pathways to block oncogenic ras signalling. Genes, 12(4). doi:10.3390/genes12040553
Rukhlenko, O., Kholodenko, B. N., & Kolch, W. (2021). Systems biology approaches to macromolecules: the role of dynamic protein assemblies in information processing. Current Opinion in Structural Biology, 67, 61-68. doi:10.1016/j.sbi.2020.09.007
Krstic, A., Konietzny, A., Halasz, M., Cain, P., Oppermann, U., Kolch, W., & Duffy, D. J. (2021). A Chemo-Genomic Approach Identifies Diverse Epigenetic Therapeutic Vulnerabilities in MYCN-Amplified Neuroblastoma. Frontiers in Cell and Developmental Biology, 9. doi:10.3389/fcell.2021.612518
Kholodenko, B. N., Rauch, N., Kolch, W., & Rukhlenko, O. S. (2021). A systematic analysis of signaling reactivation and drug resistance. Cell Reports, 35(8). doi:10.1016/j.celrep.2021.109157
Dr Arun Kumar
Kumar, A., & Kumar, A. H. S. (2020). Efficacy of Natural Extract from Ocimum Species against Fungus Gnats Infesting Plant Saplings. Biology, Engineering, Medicine and Science Reports, 6(2), 19-21. doi:10.5530/bems.6.2.6
Mathew, V., Kumar, A., Jiang, Y. K., West, K., Tam, A. S., & Stirling, P. C. (2020). Cdc48 regulates intranuclear quality control sequestration of the Hsh155 splicing factor in budding yeast. Journal of Cell Science, 133(23). doi:10.1242/jcs.252551
Kumar, A., Mcgeogh, R., Cassidy, H., Ebhardt, H. A., & Sharma, V. (2020). CX3CR1 positive myeloid cells differentially regulate atherosclerotic vascular smooth muscle contraction by plc dependent activation of transient receptor potential cation (TRPC) channels. Atherosclerosis, 315, e32. doi:10.1016/j.atherosclerosis.2020.10.106
Kumar, A. (2021). Network Pharmacology analysis of orally bioavailable SARS-COV2 protease inhibitor shows synergistic targets to improve clinical efficacy. doi:10.21203/rs.3.rs-513595/v1
Kumar, V., Fernandez, S., Sharma, D., & Kumar, A. H. S. (2021). Publication paradigm among academics in dental sciences and pseudo perceptions of journal quality matrix: A re-look into medical council of India, dental council of India, and university grants commission publication guidelines. Journal of Natural Science, Biology and Medicine, 12(1), 1-5. doi:10.4103/0976-9668.307845
Kumar, A. (2021). Molecular profiling of Neprilysin expression and its interactions with SARS-CoV-2 spike proteins to develop evidence base pharmacological approaches for therapeutic intervention. doi:10.21203/rs.3.rs-373452/v1
S. Kumar, A., & Khosravi, Z. (2021). Pharmacognosy and pharmacology of <i>Calotropis gigantea</i> for discovery of anticancer therapeutics. Pharmacognosy Magazine, 17(6), 123. doi:10.4103/pm.pm_166_21
Kumar, A. H. S. (2021). Modelling the efficacy of Neprilysin from various species in degrading different Amyloid-ß peptides: Potential application in therapeutics of Alzheimer’s disease. doi:10.1101/2021.03.25.436981
Kumar, A. H. S. (2021). Potential Use of Haematopoietic or Mesenchymal Stem Cells in the Treatment of Immune Mediated Neutropenia in Domestic Canines. Biology, Engineering, Medicine and Science Reports, 7(1), 9-10. doi:10.5530/bems.7.1.4
Zambrano M., L. A., Kilroy, D., Kumar, A., Gilchrist, M. D., & Annaidh, A. N. (2021). The presence of Wormian bones increases the fracture resistance of equine cranial bone. PLoS ONE, 16(4 April). doi:10.1371/journal.pone.0249451
Beecher, S. M., Hill, R., Kearney, L., Dorairaj, J., Kumar, A., & Clover, A. J. (2021). The pruritus severity scale-a novel tool to assess itch in burns patients.. International journal of burns and trauma, 11(3), 156-162.
Kumar, V., & Kumar, A. (2021). Self-reliance in advanced diagnostic imaging for accessible, affordable, and quality health care in India. Journal of Natural Science, Biology and Medicine, 12(2), 129-130. doi:10.4103/0976-9668.262960
Professor Carel Le Roux
Wilkinson, M., Sinclair, P., Dellatorre-Teixeira, L., Swan, P., Brennan, E., Moran, B., et al. (2020). The molecular effects of a high fat diet on endometrial tumour biology. Life, 10(9), 1-17. doi:10.3390/life10090188
Stafford, S., Aroda, V. R., Frenkel, O., Frias, J., Hindsberger, C., Gylvin, S., et al. (2020). 59 - Greater Reductions in HbA1c and Body Weight With Once-Weekly Semaglutide Vs Comparators Across Baseline BMI Subgroups: Posthoc Analysis of SUSTAIN 1–5 and 7–10. Canadian Journal of Diabetes, 44(7), S25-S26. doi:10.1016/j.jcjd.2020.08.065
Al-Ozairi, E., El Samad, A., Al Kandari, J., Taghadom, E., Adam, S., le Roux, C., & Syed, A. A. (2020). Continuous Glucose Monitoring of Glycemic Variability During Fasting Post-Sleeve Gastrectomy. Obesity Surgery, 30(10), 3721-3729. doi:10.1007/s11695-020-04505-4
Wilkinson, M., Moran, B., Sinclair, P., Swan, P., Brennan, E., Docherty, N., et al. (2020). A2m – a novel diet related endometrial cancer biomarker. Gynecologic Oncology, 159, 38-39. doi:10.1016/j.ygyno.2020.06.082
Nielsen, M. S., Christensen, B. J., Schmidt, J. B., Tækker, L., Holm, L., Lunn, S., et al. (2020). Predictors of weight loss after bariatric surgery—a cross-disciplinary approach combining physiological, social, and psychological measures. International Journal of Obesity, 44(11), 2291-2302. doi:10.1038/s41366-020-0576-9
Hopkins, M., Andrews, R., Salem, V., Taylor, R., le Roux, C. W., Robertson, E., & Burns, E. (2020). Improving understanding of type 2 diabetes remission: research recommendations from Diabetes UK’s 2019 remission workshop. Diabetic Medicine, 37(11), 1944-1950. doi:10.1111/dme.14358
Sjöholm, K., Carlsson, L. M. S., Taube, M., Le Roux, C. W., Svensson, P. A., & Peltonen, M. (2020). Comparison of preoperative remission scores and diabetes duration alone as predictors of durable type 2 diabetes remission and risk of diabetes complications after bariatric surgery: A post hoc analysis of participants from the swedish obese subjects study. Diabetes Care, 43(11), 2804-2811. doi:10.2337/dc20-0157
Martin, W. P., Tuohy, C., Doody, A., Jackson, S., Canavan, R. J., Slattery, D., et al. (2020). Parallel assessment of albuminuria and plasma sTNFR1 in people with type 2 diabetes and advanced chronic kidney disease provides accurate prognostication of the risks of renal decline and death. Scientific Reports, 10(1). doi:10.1038/s41598-020-71684-6
Kwok, S., Adam, S., Ho, J. H., Iqbal, Z., Turkington, P., Razvi, S., et al. (2020). Obesity: A critical risk factor in the COVID-19 pandemic.. Clinical obesity, 10(6), e12403. doi:10.1111/cob.12403
Minnock, D., Annibalini, G., Le Roux, C. W., Contarelli, S., Krause, M., Saltarelli, R., et al. (2020). Effects of acute aerobic, resistance and combined exercises on 24-h glucose variability and skeletal muscle signalling responses in type 1 diabetics. European Journal of Applied Physiology, 120(12), 2677-2691. doi:10.1007/s00421-020-04491-6
Silveira, F. C., Docherty, N. G., Sallet, P. C., Moraes, M., Monclaro, T., Arruda e Silva, M., et al. (2020). Early Post-operative Weight Change After Roux-en-Y Gastric Bypass Predicts Weight Loss at 12-Month Follow-up. Obesity Surgery, 30(12), 5020-5025. doi:10.1007/s11695-020-04942-1
Martin, W. P., & le Roux, C. W. (2020). Can Metabolic Surgery Be Used to Improve Access to and Outcomes of Kidney Transplantation?. Obesity, 28(12), 2259. doi:10.1002/oby.23052
Docherty, N. G., & le Roux, C. W. (2020). Bariatric surgery for the treatment of chronic kidney disease in obesity and type 2 diabetes mellitus. Nature Reviews Nephrology, 16(12), 709-720. doi:10.1038/s41581-020-0323-4
Martin, W. P., Bauer, J., Coleman, J., Dellatorre-Teixeira, L., Reeve, J. L. V., Twomey, P. J., et al. (2020). Obesity is common in chronic kidney disease and associates with greater antihypertensive usage and proteinuria: evidence from a cross-sectional study in a tertiary nephrology centre.. Clinical obesity, 10(6), e12402. doi:10.1111/cob.12402
McGlone, E. R., Carey, I., Velickovic, V., Chana, P., Mahawar, K., Batterham, R. L., et al. (2020). Bariatric surgery for patients with type 2 diabetes mellitus requiring insulin: Clinical outcome and cost-effectiveness analyses. PLoS Medicine, 17(12). doi:10.1371/journal.pmed.1003228
Hankir, M. K., Langseder, T., Bankoglu, E. E., Ghoreishi, Y., Dischinger, U., Kurlbaum, M., et al. (2020). Simulating the Post-gastric Bypass Intestinal Microenvironment Uncovers a Barrier-Stabilizing Role for FXR. iScience, 23(12). doi:10.1016/j.isci.2020.101777
Moffett, R. C., Docherty, N. G., & le Roux, C. W. (2021). The altered enteroendocrine reportoire following roux-en-Y-gastric bypass as an effector of weight loss and improved glycaemic control. Appetite, 156. doi:10.1016/j.appet.2020.104807
Samarasinghe, S., Sudlow, A., Dimitriadis, G. K., Ahmed, A. R., Purkayastha, S., Tsironis, C., et al. (2021). Simple tool to prioritize access to bariatric surgery for people living with obesity during the COVID-19 pandemic. British Journal of Surgery, 108, 1-2. doi:10.1093/BJS/ZNAB037
Murphy, C. F., Stratford, N., Docherty, N. G., Moran, B., Elliott, J. A., Healy, M. L., et al. (2021). A Pilot Study of Gut-Brain Signaling after Octreotide Therapy for Unintentional Weight Loss after Esophagectomy. Journal of Clinical Endocrinology and Metabolism, 106(1), E204-E216. doi:10.1210/clinem/dgaa697
Alruwaili, H., Dehestani, B., & Le Roux, C. W. (2021). Clinical impact of liraglutide as a treatment of obesity. Clinical Pharmacology: Advances and Applications, 13, 53-60. doi:10.2147/CPAA.S276085
Meyer-Gerspach, A. C., Drewe, J., Verbeure, W., Le Roux, C. W., Dellatorre-Teixeira, L., Rehfeld, J. F., et al. (2021). Effect of the natural sweetener xylitol on gut hormone secretion and gastric emptying in humans: A pilot dose-ranging study. Nutrients, 13(1), 1-21. doi:10.3390/nu13010174
Sudlow, A. C., & le Roux, C. W. (2021). Why are adolescents with obesity and diabetes not having bariatric surgery earlier?. Surgery for Obesity and Related Diseases, 17(1), 33-35. doi:10.1016/j.soard.2020.10.005
Braga, T. G., Graças Coelho de Souza, M. D., Menezes, M., Nogueira Neto, J. F., Dellatorre-Teixeira, L., Bouskela, E., et al. (2021). Dipeptidyl peptidase-4 activity, lipopolysaccharide, C-reactive protein, glucose metabolism, and gut peptides 3 months after bariatric surgery. Surgery for Obesity and Related Diseases, 17(1), 113-120. doi:10.1016/j.soard.2020.08.030
le Roux, C. W., Ottosson, J., Näslund, E., Cohen, R. V., Stenberg, E., Sundbom, M., & Näslund, I. (2021). Bariatric Surgery: There Is a Room for Improvement to Reduce Mortality in Patients with Type 2 Diabetes. Obesity Surgery, 31(1), 461-463. doi:10.1007/s11695-020-04934-1
Meyer-Gerspach, A. C., Wingrove, J. O., Beglinger, C., Rehfeld, J. F., Le Roux, C. W., Peterli, R., et al. (2021). Erythritol and xylitol differentially impact brain networks involved in appetite regulation in healthy volunteers. Nutritional Neuroscience. doi:10.1080/1028415X.2021.1965787
Miras, A. D., & le Roux, C. W. (2021). Metabolic surgery versus conventional therapy in type 2 diabetes. The Lancet, 397(10271), 256-257. doi:10.1016/S0140-6736(21)00129-X
Grannell, A., Fallon, F., Pournaras, D., & le Roux, C. W. (2021). Exploring patient beliefs and perceptions regarding obesity as a disease, obesity causation and treatment. Irish Journal of Medical Science, 190(1), 163-168. doi:10.1007/s11845-020-02319-y
Carvalho Silveira, F., Martin, W. P., Maranga, G., le Roux, C. W., & Ren-Fielding, C. J. (2021). The Impact of CKD on Perioperative Risk and Mortality after Bariatric Surgery.. Kidney360, 2(2), 236-244. doi:10.34067/kid.0004832020
Cohen, R. V., Pereira, T. V., & Le Roux, C. W. (2021). The Role of Bariatric Surgery in Prevention of Kidney Disease Progression in Moderately Obese Patients with Type 2 Diabetes - Reply. JAMA Surgery, 156(2), 206-207. doi:10.1001/jamasurg.2020.5192
le Roux, C. W. (2021). COVID-19 alters thinking and management in metabolic diseases. Nature Reviews Endocrinology, 17(2), 71-72. doi:10.1038/s41574-020-00449-y
Murphy, C. F., Fanning, M., Raftery, N., Elliott, J. A., Docherty, N. G., Donohoe, C. L., et al. (2021). Early experience with a nutrition and survivorship clinic in esophageal cancer. Diseases of the esophagus : official journal of the International Society for Diseases of the Esophagus, 34(2). doi:10.1093/dote/doaa061
Friedman, A. N., Kaplan, L. M., le Roux, C. W., & Schauer, P. R. (2021). Management of Obesity in Adults with CKD. . Journal of the American Society of Nephrology : JASN, ASN.2020101472. doi:10.1681/asn.2020101472
Shulman, A., Andersson-Assarsson, J. C., Sjöström, C. D., Jacobson, P., Taube, M., Sjöholm, K., et al. (2021). Remission and progression of pre-existing micro- and macroalbuminuria over 15 years after bariatric surgery in Swedish Obese Subjects study. International Journal of Obesity, 45(3), 535-546. doi:10.1038/s41366-020-00707-z
Grannell, A., Martin, W. P., Dehestani, B., Al-Najim, W., Murphy, J. C., & le Roux, C. W. (2021). Liraglutide Does Not Adversely Impact Fat-Free Mass Loss. Obesity, 29(3), 529-534. doi:10.1002/oby.23098
Mosenzon, O., Garvey, W. T., Hesse, D., Koroleva, A., Kushner, R. F., Lim, S., et al. (2021). Clinically-Relevant Weight Loss is Achieved Independently of Early Weight Loss Response to Once-Weekly Subcutaneous Semaglutide 2.4 MG (STEP 4). Journal of the Endocrine Society, 5(Supplement_1), A7. doi:10.1210/jendso/bvab048.013
Kushner, R. F., Garvey, W. T., Hesse, D., Koroleva, A., Lim, S., Lingvay, I., et al. (2021). Once-weekly Subcutaneous Semaglutide 2.4 mg Reduces Body Weight in Adults with Overweight or Obesity Regardless of Baseline Characteristics (STEP 1). Journal of the Endocrine Society, 5(Supplement_1), A24. doi:10.1210/jendso/bvab048.046
Garvey, W. T., Hesse, D., Koroleva, A., Kushner, R. F., Lim, S., Lingvay, I., et al. (2021). Abstract #1003901: Once-Weekly Subcutaneous Semaglutide 2.4 mg Plus Intensive Behavioral Therapy Produces Clinically Meaningful Weight Loss in Adults with Overweight/Obesity Regardless of Baseline Characteristics and Weight History. Endocrine Practice, 27(6), S80-S81. doi:10.1016/j.eprac.2021.04.638
Wölnerhanssen, B. K., Drewe, J., Verbeure, W., le Roux, C. W., Dellatorre-Teixeira, L., Rehfeld, J. F., et al. (2021). Gastric emptying of solutions containing the natural sweetener erythritol and effects on gut hormone secretion in humans: A pilot dose-ranging study. Diabetes, Obesity and Metabolism, 23(6), 1311-1321. doi:10.1111/dom.14342
Redpath, T. L., Livingstone, M. B. E., Dunne, A. A., Boyd, A., le Roux, C. W., Spector, A. C., & Price, R. K. (2021). Methodological issues in assessing change in dietary intake and appetite following gastric bypass surgery: A systematic review. Obesity Reviews, 22(6). doi:10.1111/obr.13202
Vincent, R. P., Goo, C. H., Wu, P. F., & Le Roux, C. W. (2008). The impact of 2006 guidance on nutrition support, in clinical outcome measures. Proceedings of the Nutrition Society, 67(OCE3). doi:10.1017/s0029665100591186
Mohammed, N., Buckley, A., Elsheikh, M., Allum, M., Suliman, S., Al Hadad, M., et al. (2021). Bariatric surgery in the treatment of patients with obesity and type 1 diabetes: A retrospective study of clinical data. Diabetes, Obesity and Metabolism, 23(7), 1562-1570. doi:10.1111/dom.14369
Murphy, C. F., Elliott, J. A., Docherty, N. G., Mohamed, A. A., Vincent, R. P., Ravi, N., et al. (2021). Exaggerated postprandial GLP-1 secretion following esophagectomy is not associated with gastric emptying and intestinal transit. Diseases of the Esophagus, 34(7). doi:10.1093/dote/doaa098
Pournaras, D. J., & le Roux, C. W. (2021). Understanding the mechanism of how bariatric surgery works is a key component to build the evidence base. Surgery for Obesity and Related Diseases, 17(7), 1391-1392. doi:10.1016/j.soard.2021.04.003
Nielsen, M. S., Christensen, B. J., Ritz, C., Holm, L., Lunn, S., Tækker, L., et al. (2021). Factors Associated with Favorable Changes in Food Preferences After Bariatric Surgery. Obesity Surgery, 31(8), 3514-3524. doi:10.1007/s11695-021-05374-1
Neff, K. J., & le Roux, C. W. (2021). Primum non nocere—first, do no harm with bariatric surgery. The Lancet Diabetes and Endocrinology, 9(8), 476-477. doi:10.1016/S2213-8587(21)00143-1
Grannell, A., Fallon, F., Al-Najim, W., & le Roux, C. (2021). Obesity and responsibility: Is it time to rethink agency?. Obesity Reviews, 22(8). doi:10.1111/obr.13270
Spence, H., McElroy, A., Kerr, M. A., Gill, C., Sittlington, J., Le Roux, C. W., et al. (2021). Food intake behaviours in obese versus non obese adults; an observational study. Proceedings of the Nutrition Society, 80(OCE3). doi:10.1017/s002966512100255x

Professor Gil Lee
Gandhi, D., Li, P., Rampini, S., Parent, C., & Lee, G. U. (2020). Optical detection of the magnetophoretic transport of superparamagnetic beads on a micromagnetic array. Scientific Reports, 10(1). doi:10.1038/s41598-020-69757-7
Professor Patrick Lonergan
Lonergan, P., & Sánchez, J. M. (2020). Symposium review: Progesterone effects on early embryo development in cattle. Journal of Dairy Science, 103(9), 8698-8707. doi:10.3168/jds.2020-18583
Bernecic, N., Perrier, J. -P., Keogh, K., Lonergan, P., Kenny, D., & Fair, S. (2020). Protamine 1 as a potential biomarker of bull fertility. Animal Reproduction Science, 220, 106429. doi:10.1016/j.anireprosci.2020.106429
Taaffe, P., O’Meara, C., Eivers, B., Bernecic, N., Meade, K., Lonergan, P., & Fair, S. (2020). Vitamin D and peri-pubertal bull fertility. Animal Reproduction Science, 220, 106437. doi:10.1016/j.anireprosci.2020.106437
Llamas-Luceño, N., Hostens, M., Mullaart, E., Broekhuijse, M., Lonergan, P., & Van Soom, A. (2020). High temperature-humidity index compromises sperm quality and fertility of Holstein bulls in temperate climates. Journal of Dairy Science, 103(10), 9502-9514. doi:10.3168/jds.2019-18089
Hamze, J. G., Sánchez, J. M., O'Callaghan, E., McDonald, M., Bermejo-Álvarez, P., Romar, R., et al. (2020). JUNO protein coated beads: A potential tool to predict bovine sperm fertilizing ability. Theriogenology, 155, 168-175. doi:10.1016/j.theriogenology.2020.05.025
Coen, S. P., Kenny, D. A., Fair, S., Lonergan, P., & Keogh, K. (2020). PSVII-41 Late-Breaking Abstract: Impact of enhanced early life nutrition on the testes transcriptional profile of the bull calf. Journal of Animal Science, 98(Supplement_4), 341-342. doi:10.1093/jas/skaa278.605
Keogh, K., Coen, S. P., Lonergan, P., Fair, S., & Kenny, D. A. (2020). PSIX-26 Effect of enhanced nutrition during early life on the transcriptional profile of the arcuate nucleus region of the hypothalamus in Holstein Friesian bull calves. Journal of Animal Science, 98(Supplement_4), 332-333. doi:10.1093/jas/skaa278.591
Drake, E., Holden, S. A., Aublet, V., Doyle, R. C., Millar, C., Moore, S. G., et al. (2020). Evaluation of delayed timing of artificial insemination with sex-sorted sperm on pregnancy per artificial insemination in seasonal-calving, pasture-based lactating dairy cows. Journal of Dairy Science, 103(12), 12059-12068. doi:10.3168/jds.2020-18847
Surlis, C., Cormican, P., Waters, S. M., Lonergan, P., Keogh, K., Doyle, D. N., & Kenny, D. A. (2020). Effects of dietary n-3-PUFA supplementation, post-insemination plane of nutrition and pregnancy status on the endometrial transcriptome of beef heifers. Scientific Reports, 10(1). doi:10.1038/s41598-020-77604-y
Gad, A., Sánchez, J. M., Browne, J. A., Nemcova, L., Laurincik, J., Prochazka, R., & Lonergan, P. (2020). Plasma extracellular vesicle miRNAs as potential biomarkers of superstimulatory response in cattle. Scientific Reports, 10(1). doi:10.1038/s41598-020-76152-9
Pluta, K., Jones, P. R. H., Drabinska, N., Ratcliffe, N., Carrington, S. D., Lonergan, P., & Evans, A. C. O. (2021). The potential of volatile organic compound analysis in cervicovaginal mucus to predict estrus and ovulation in estrus-synchronized heifers. Journal of Dairy Science, 104(1), 1087-1098. doi:10.3168/jds.2020-19024
Coen, S. P., Keogh, K., Byrne, C. J., Lonergan, P., Fair, S., Crowe, M. A., & Kenny, D. A. (2021). Effect of plane of nutrition during the first 12 weeks of life on growth, metabolic and reproductive hormone concentrations, and testicular relative mRNA abundance in preweaned Holstein Friesian bull calves. Journal of Animal Science, 99(9), 1-12. doi:10.1093/jas/skab195
O'Callaghan, E., Keogh, K., Staub, C., Cirot, M., Heslin, J., Fair, S., et al. (2021). 101 Heifer plane of nutrition during the prepubertal phase modifies reproductive development in male fetuses. Reproduction, Fertility and Development, 33(2), 158. doi:10.1071/rdv33n2ab101
Chaney, H. L., Grose, L. F., Charpigny, G., Behura, S. K., Sheldon, I. M., Cronin, J. G., et al. (2021). Conceptus-induced, interferon tau-dependent gene expression in bovine endometrial epithelial and stromal cells<sup>†</sup>. Biology of Reproduction, 104(3), 669-683. doi:10.1093/biolre/ioaa226
Taaffe, P., O'Meara, C., Stiavnicka, M., Byrne, C., Eivers, B., Lonergan, P., & Fair, S. (2021). 115. Increasing the frequency of ejaculate collection in young dairy bulls increases semen production and field fertility. Animal - science proceedings, 12(1), 94. doi:10.1016/j.anscip.2021.03.116
Keogh, K., Coen, S. P., Lonergan, P., Fair, S., & Kenny, D. A. (2021). 155 Effect of early life nutritional status on the transcriptional profile of hepatic tissue in Holstein Friesian bull calves. Animal - science proceedings, 12(1), 125. doi:10.1016/j.anscip.2021.03.156
Simintiras, C. A., Sánchez, J. M., McDonald, M., O'Callaghan, E., Aburima, A. A., & Lonergan, P. (2021). Conceptus metabolomic profiling reveals stage-specific phenotypes leading up to pregnancy recognition in cattle<sup>†</sup>. Biology of Reproduction, 104(5), 1022-1033. doi:10.1093/biolre/ioab021
Rabaglino, M. B., O’Doherty, A., Secher, J. B. M., Lonergan, P., Hyttel, P., Fair, T., & Kadarmideen, H. N. (2021). Application of multi-omics data integration and machine learning approaches to identify epigenetic and transcriptomic differences between in vitro and in vivo produced bovine embryos. PLoS ONE, 16(5 May). doi:10.1371/journal.pone.0252096
O'Callaghan, E., Sánchez, J. M., McDonald, M., Kelly, A. K., Hamdi, M., Maicas, C., et al. (2021). Sire contribution to fertilization failure and early embryo survival in cattle. Journal of Dairy Science, 104(6), 7262-7271. doi:10.3168/jds.2020-19900
Sánchez, J. M., Gómez-Redondo, I., Browne, J. A., Planells, B., Gutiérrez-Adán, A., & Lonergan, P. (2021). MicroRNAs in amniotic fluid and maternal blood plasma associated with sex determination and early gonad differentiation in cattle. Biology of Reproduction, 105(2), 345-358. doi:10.1093/biolre/ioab079
Alrabiah, N. A., Evans, A. C. O., Fahey, A. G., Cantwell, N., Lonergan, P., McCormack, J., et al. (2021). Immunological aspects of ovarian follicle ovulation and corpus luteum formation in cattle. Reproduction, 162(3), 209-225. doi:10.1530/REP-21-0165
Byrne, C. J., Fair, S., Dick, J. R., Lonergan, P., & Kenny, D. A. (2021). Dietary supplementation with fish oil and safflower oil, during the finishing period, alters brisket muscle fatty acid profile and n-6/n-3 ratio but not carcass traits of dairy beef bulls. Applied Animal Science, 37(4), 436-444. doi:10.15232/aas.2021-02158
Professor David MacHugh
Wang, D., Liu, L., Augustino, S. M. A., Duan, T., Hall, T. J., MacHugh, D. E., et al. (2020). Identification of novel molecular markers of mastitis caused by Staphylococcus aureus using gene expression profiling in two consecutive generations of Chinese Holstein dairy cattle. Journal of Animal Science and Biotechnology, 11(1). doi:10.1186/s40104-020-00494-7
McGivney, B. A., Han, H., Corduff, L. R., Katz, L. M., Tozaki, T., MacHugh, D. E., & Hill, E. W. (2020). Genomic inbreeding trends, influential sire lines and selection in the global Thoroughbred horse population. Scientific Reports, 10(1). doi:10.1038/s41598-019-57389-5
Niedziela, D., Naranjo-Lucena, A., Molina-Hernández, V., Browne, J., Martínez-Moreno, Á., Pérez, J., et al. (2021). Timing of transcriptomic peripheral blood mononuclear cell responses of sheep to <i>Fasciola hepatica</i> infection differs from those of cattle, reflecting different disease phenotypes. doi:10.1101/2021.06.21.449266
McLoughlin, K. E., Correia, C. N., Browne, J. A., Magee, D. A., Nalpas, N. C., Rue-Albrecht, K., et al. (2021). RNA-Seq Transcriptome Analysis of Peripheral Blood From Cattle Infected With Mycobacterium bovis Across an Experimental Time Course. Frontiers in Veterinary Science, 8. doi:10.3389/fvets.2021.662002
Naranjo-Lucena, A., Correia, C. N., Molina-Hernández, V., Martínez-Moreno, A., Browne, J. A., Pérez, J., et al. (2021). Transcriptomic Analysis of Ovine Hepatic Lymph Node Following Fasciola hepatica Infection – Inhibition of NK Cell and IgE-Mediated Signaling. Frontiers in Immunology, 12. doi:10.3389/fimmu.2021.687579
Ward, J. A., McHugo, G. P., Dover, M. J., Hall, T. J., Ismael Ng’ang’a, S., Sonstegard, T. S., et al. (2021). Genome-wide local ancestry and direct evidence for mitonuclear coadaptation in African hybrid cattle populations (<i>Bos taurus</i>/<i>indicus</i>). doi:10.1101/2021.08.26.457829
Professor Patricia Maguire
Kelliher, S., Maguire, P. B., Szklanna, P. B., Weiss, L., Ewins, K., O'Doherty, R., et al. (2020). Pathophysiology of the Venous Thromboembolism Risk in Preeclampsia. Hamostaseologie, 40(5), 594-604. doi:10.1055/a-1162-3905
Cremer, S. E., Catalfamo, J. L., Goggs, R., Seemann, S. E., Kristensen, A. T., Szklanna, P. B., et al. (2021). The canine activated platelet secretome (CAPS): A translational model of thrombin-evoked platelet activation response. Research and Practice in Thrombosis and Haemostasis, 5(1), 55-68. doi:10.1002/rth2.12450
Cullivan, S., Murphy, C. A., Weiss, L., Comer, S. P., Kevane, B., McCullagh, B., et al. (2021). Platelets, extracellular vesicles and coagulation in pulmonary arterial hypertension. Pulmonary Circulation, 11(3). doi:10.1177/20458940211021036
Comer, S. P., Cullivan, S., Szklanna, P. B., Weiss, L., Cullen, S., Kelliher, S., et al. (2021). COVID-19 induces a hyperactive phenotype in circulating platelets. PLoS Biology, 19(2). doi:10.1371/JOURNAL.PBIO.3001109
Twomey, L., Navasiolava, N., Robin, A., Bareille, M. -P., Gauquelin-Koch, G., Beck, A., et al. (2021). Function, Proteomic and miRomic Study of a Dry Immersion Model of Microgravity implicates the Wnt/Dkk1/AXIN1 axis in Prothrombotic Platelet Phenotype. doi:10.21203/rs.3.rs-610421/v1
Szklanna, P. B., Altaie, H., Comer, S. P., Cullivan, S., Kelliher, S., Weiss, L., et al. (2021). Routine Hematological Parameters May Be Predictors of COVID-19 Severity. Frontiers in Medicine, 8. doi:10.3389/fmed.2021.682843
Murphy, C. A., O’Reilly, D. P., Neary, E., EL-Khuffash, A., NíAinle, F., McCallion, N., & Maguire, P. B. (2021). A review of the role of extracellular vesicles in neonatal physiology and pathology. Pediatric Research, 90(2), 289-299. doi:10.1038/s41390-020-01240-5
Professor Fionnuala McAuliffe
McAuliffe, F. M., Killeen, S. L., Jacob, C. M., Hanson, M. A., Hadar, E., McIntyre, H. D., et al. (2020). Management of prepregnancy, pregnancy, and postpartum obesity from the FIGO Pregnancy and Non-Communicable Diseases Committee: A FIGO (International Federation of Gynecology and Obstetrics) guideline. International Journal of Gynecology and Obstetrics, 151(S1), 16-36. doi:10.1002/ijgo.13334
Saravanan, P., Magee, L. A., Banerjee, A., Coleman, M. A., Von Dadelszen, P., Denison, F., et al. (2020). Gestational diabetes: opportunities for improving maternal and child health. The Lancet Diabetes and Endocrinology, 8(9), 793-800. doi:10.1016/S2213-8587(20)30161-3
Jacob, C. M., Killeen, S. L., McAuliffe, F. M., Stephenson, J., Hod, M., Diaz Yamal, I., et al. (2020). Prevention of noncommunicable diseases by interventions in the preconception period: A FIGO position paper for action by healthcare practitioners. International Journal of Gynecology and Obstetrics, 151, 6-15. doi:10.1002/ijgo.13331
Tsoi, K. Y., Chan, R. S. M., Li, L. S., McAuliffe, F. M., Hanson, M. A., Tam, W. H., & Ma, R. C. W. (2020). Evaluation of dietary pattern in early pregnancy using the FIGO Nutrition Checklist compared to a food frequency questionnaire. International Journal of Gynecology and Obstetrics, 151, 37-44. doi:10.1002/ijgo.13324
Killeen, S. L., Callaghan, S. L., Jacob, C. M., Hanson, M. A., & McAuliffe, F. M. (2020). Examining the use of the FIGO Nutrition Checklist in routine antenatal practice: multistakeholder feedback to implementation. International Journal of Gynecology and Obstetrics, 151(S1), 51-56. doi:10.1002/ijgo.13323
Killeen, S. L., Callaghan, S. L., Jacob, C. M., Hanson, M. A., & McAuliffe, F. M. (2020). “It only takes two minutes to ask”—a qualitative study with women on using the FIGO Nutrition Checklist in pregnancy. International Journal of Gynecology and Obstetrics, 151(S1), 45-50. doi:10.1002/ijgo.13322
Hanson, M. A., McAuliffe, F. M., Louise Killeen, S., Maria Jacob, C., & Hod, M. (2020). New guidelines, position paper, and insights from the FIGO Pregnancy Obesity and Nutrition Initiative (PONI). International Journal of Gynecology and Obstetrics, 151(S1), 1-3. doi:10.1002/ijgo.13321
Chopra, M., Kaur, N., Singh, K. D., Maria Jacob, C., Divakar, H., Babu, G. R., et al. (2020). Population estimates, consequences, and risk factors of obesity among pregnant and postpartum women in India: Results from a national survey and policy recommendations. International Journal of Gynecology and Obstetrics, 151(S1), 57-67. doi:10.1002/ijgo.13319
Flannery, C., Mtshede, M. N., McHugh, S., Anaba, A. E., Clifford, E., O'Riordan, M., et al. (2020). Dietary behaviours and weight management: A thematic analysis of pregnant women's perceptions. Maternal and Child Nutrition, 16(4). doi:10.1111/mcn.13011
Courtney, A. U., O’Brien, E. C., Crowley, R. K., Geraghty, A. A., Brady, M. B., Kilbane, M. T., et al. (2020). DASH (Dietary Approaches to Stop Hypertension) dietary pattern and maternal blood pressure in pregnancy. Journal of Human Nutrition and Dietetics, 33(5), 686-697. doi:10.1111/jhn.12744
Moore, R. L., Geraghty, A. A., Feehily, C., Saldova, R., Murphy, E. F., Van Sinderen, D., et al. (2020). Can a probiotic supplement in pregnancy result in transfer to the neonatal gut: A systematic review. Acta Obstetricia et Gynecologica Scandinavica, 99(10), 1269-1277. doi:10.1111/aogs.13899
Mulcahy, C. H., McParland, P., McAuliffe, F. M., & McMahon, C. (2020). VP16.09: Severe maternal mirror syndrome associated with fetal supraventricular tachycardia. Ultrasound in Obstetrics & Gynecology, 56(S1), 121. doi:10.1002/uog.22575
Bartels, H. C., Craven, S. E., Mulligan, K. M., Donnelly, J., Corcoran, S. M., Higgins, S., et al. (2020). OC08.01: Placenta accreta spectrum prenatal ultrasound grade and association with clinical outcomes. Ultrasound in Obstetrics & Gynecology, 56(S1), 22. doi:10.1002/uog.22253
Callaghan, S., O’Brien, E., Coughlan, B., & McAuliffe, F. M. (2020). Midwives’ and obstetricians’ level of knowledge of appropriate gestational weight gain recommendations for pregnancy: A systematic review. Birth, 47(4), 322-331. doi:10.1111/birt.12485
Allotey, J., Snell, K. I. E., Smuk, M., Hooper, R., Chan, C. L., Ahmed, A., et al. (2020). Validation and development of models using clinical, biochemical and ultrasound markers for predicting pre-eclampsia: An individual participant data meta-analysis. Health Technology Assessment, 24(72), 1-290. doi:10.3310/HTA24720
Snell, K. I. E., Allotey, J., Smuk, M., Hooper, R., Chan, C., Ahmed, A., et al. (2020). External validation of prognostic models predicting pre-eclampsia: individual participant data meta-analysis. BMC Medicine, 18(1). doi:10.1186/s12916-020-01766-9
Yap, M., Feehily, C., Walsh, C. J., Fenelon, M., Murphy, E. F., McAuliffe, F. M., et al. (2020). Evaluation of methods for the reduction of contaminating host reads when performing shotgun metagenomic sequencing of the milk microbiome. Scientific Reports, 10(1). doi:10.1038/s41598-020-78773-6
Geraghty, A. A., Sexton-Oates, A., O’brien, E. C., Saffery, R., & McAuliffe, F. M. (2020). Epigenetic patterns in five-year-old children exposed to a low glycemic index dietary intervention during pregnancy: Results from the ROLO kids study. Nutrients, 12(12), 1-16. doi:10.3390/nu12123602
van Winden, T. M. S., Roos, C., Nijman, T. A. J., Kleinrouweler, C. E., Olaru, A., Mol, B. W., et al. (2020). Tocolysis compared with no tocolysis in women with threatened preterm birth and ruptured membranes: A propensity score analysis. European Journal of Obstetrics and Gynecology and Reproductive Biology, 255, 67-73. doi:10.1016/j.ejogrb.2020.10.015
Byrne, D. F., Geraghty, A. A., Yelverton, C. A., Murphy, E. F., Van Sinderen, D., Cotter, P. D., & McAuliffe, F. M. (2020). The impact of probiotic supplementation on metabolic health in healthy women of reproductive age: A systematic review. Food and Function, 11(12), 10279-10289. doi:10.1039/d0fo01727b
Feehily, C., Crosby, D., Walsh, C. J., Lawton, E. M., Higgins, S., McAuliffe, F. M., & Cotter, P. D. (2020). Shotgun sequencing of the vaginal microbiome reveals both a species and functional potential signature of preterm birth. npj Biofilms and Microbiomes, 6(1). doi:10.1038/s41522-020-00162-8
Doherty, J., Jones, F., McAuliffe, F. M., Maguire, D., & McCormick, P. A. (2021). Clinical course and maternal outcomes following pregnancy in liver transplant recipients. Irish Medical Journal, 114(5).
Crosby, D. A., Glover, L. E., Downey, P., Mooney, E. E., McAuliffe, F. M., O'Farrelly, C., et al. (2021). Mid-luteal uterine artery Doppler indices in the prediction of pregnancy outcome in nulliparous women undergoing assisted reproduction. Human Fertility. doi:10.1080/14647273.2021.1872111
Flaherty, S. J., McCarthy, M., Collins, A. M., McCafferty, C., & McAuliffe, F. M. (2021). Exploring engagement with health apps: the emerging importance of situational involvement and individual characteristics. European Journal of Marketing, 55(13), 122-147. doi:10.1108/EJM-06-2019-0531
Killeen, S. L., Browne, I., Geraghty, A. A., Doyle, S., & McAuliffe, F. M. (2021). Addressing health literacy for improved outcomes: A focus on pregnancy. Irish Medical Journal, 114(3).
Corbett, G. A., Crosby, D. A., & McAuliffe, F. M. (2021). Probiotic therapy in couples with infertility: A systematic review. European Journal of Obstetrics and Gynecology and Reproductive Biology, 256, 95-100. doi:10.1016/j.ejogrb.2020.10.054
Quigley, N., Keating, N., Rooney, G., Sheil, O., O’laoide, R., McMorrow, R., et al. (2021). Management of an unstable preterm covid-19 pregnant woman with emergency caesarean delivery. Irish Medical Journal, 114(1).
Chen, L. W., Aubert, A. M., Shivappa, N., Bernard, J. Y., Mensink-Bout, S. M., Geraghty, A. A., et al. (2021). Associations of maternal dietary inflammatory potential and quality with offspring birth outcomes: An individual participant data pooled analysis of 7 European cohorts in the ALPHABET consortium. PLoS Medicine, 18(1). doi:10.1371/JOURNAL.PMED.1003491
Kennelly, M. A., Killeen, S. L., Philips, C. M., Ainscough, K., Alberdi, G., Lindsay, K. L., et al. (2021). 437 Maternal inflammation, maternal and fetal metabolism, pregnancy outcomes and an antenatal healthy lifestyle intervention. American Journal of Obstetrics and Gynecology, 224(2), S278. doi:10.1016/j.ajog.2020.12.458
O’Leary, B. D., Walsh, M., Mooney, E. E., McAuliffe, F. M., Knowles, S. J., Mahony, R. M., & Downey, P. (2021). The etiology of stillbirth over 30 years: A cross-sectional study in a tertiary referral unit. Acta Obstetricia et Gynecologica Scandinavica, 100(2), 314-321. doi:10.1111/aogs.13992
Yelverton, C., Rafferty, A., & Mcauliffe, F. M. (2021). 436 Diet for mental health in pregnancy: nutrients of importance based on large observational cohort data. American Journal of Obstetrics and Gynecology, 224(2), S277-S278. doi:10.1016/j.ajog.2020.12.457
Yelverton, C., McDonnell, C., Bartels, H. C., Geraghty, A. A., O'Brien, E., & Mcauliffe, F. M. (2021). 435 Blood lipid profiles in early pregnancy are associated with fetal growth trajectories. American Journal of Obstetrics and Gynecology, 224(2), S277. doi:10.1016/j.ajog.2020.12.456
Start, A. O., Ryan, G., McParland, P., Crimmins, D., Caird, J., & Mcauliffe, F. M. (2021). 431 Severe ventriculomegaly: fetal morbidity and mortality and cesarean delivery rates. American Journal of Obstetrics and Gynecology, 224(2), S275. doi:10.1016/j.ajog.2020.12.452
Worrrall, A. P., Cunningham, O., Jackson, V., Lawless, M., Murphy, S., O'Connell, M. P., et al. (2021). 426 Demographics and outcomes of syphilis seropositive pregnant women and infants in three Irish maternity hospitals. American Journal of Obstetrics and Gynecology, 224(2), S272. doi:10.1016/j.ajog.2020.12.447
Ryan, G., Start, A. O., Crimmins, D., Caird, J., McParland, P., & Mcauliffe, F. M. (2021). 430 Prenatal findings and associated survival rates in fetal ventriculomegaly: a prospective observational study. American Journal of Obstetrics and Gynecology, 224(2), S274-S275. doi:10.1016/j.ajog.2020.12.451
Melamed, N., Baschat, A., Yinon, Y., Athanasiadis, A., Mecacci, F., Figueras, F., et al. (2021). FIGO (international Federation of Gynecology and obstetrics) initiative on fetal growth: best practice advice for screening, diagnosis, and management of fetal growth restriction. International Journal of Gynecology and Obstetrics, 152(S1), 3-57. doi:10.1002/ijgo.13522
Ashraf, Z., Crone, L., & Higgins, M. F. (2021). Factors affecting confidence and competence of doctors in performing operative vaginal births: A qualitative study. European Journal of Obstetrics and Gynecology and Reproductive Biology, 258, 348-352. doi:10.1016/j.ejogrb.2021.01.045
Yelverton, C. A., Geraghty, A. A., O’Brien, E. C., Killeen, S. L., Horan, M. K., Donnelly, J. M., et al. (2021). Breastfeeding and maternal eating behaviours are associated with child eating behaviours: findings from the ROLO Kids Study. European Journal of Clinical Nutrition, 75(4), 670-679. doi:10.1038/s41430-020-00764-7
Ryan, G. V., Callaghan, S., Rafferty, A., Higgins, M. F., Mangina, E., & McAuliffe, F. (2021). Learning Outcomes of Immersive Technologies in Health Care Student Education: Systematic Review of the Literature (Preprint). doi:10.2196/preprints.30082
Sheil, O., & McAuliffe, F. M. (2021). Reorganisation of obstetric services during the COVID pandemic – Experience from National Maternity Hospital Dublin Ireland. Best Practice and Research: Clinical Obstetrics and Gynaecology, 73, 104-112. doi:10.1016/j.bpobgyn.2021.03.013
O'Reilly, S. L., O'Brien, E. C., McGuinness, D., Mehegan, J., Coughlan, B., O'Brien, D., et al. (2021). Latch On: A protocol for a multi-centre, randomised controlled trial of perinatal support to improve breastfeeding outcomes in women with a raised BMI. Contemporary Clinical Trials Communications, 22, 100767. doi:10.1016/j.conctc.2021.100767
Poon, L. C., Magee, L. A., Verlohren, S., Shennan, A., von Dadelszen, P., Sheiner, E., et al. (2021). A literature review and best practice advice for second and third trimester risk stratification, monitoring, and management of pre-eclampsia: Compiled by the Pregnancy and Non-Communicable Diseases Committee of FIGO (the International Federation of Gynecology and Obstetrics). International Journal of Gynecology and Obstetrics, 154(S1), 3-31. doi:10.1002/ijgo.13763
Crosby, D. A., Glover, L. E., Downey, P., Mooney, E. E., McAuliffe, F. M., O’Farrelly, C., et al. (2021). The impact of accurately timed mid-luteal endometrial injury in nulligravid women undergoing their first or second embryo transfer. Irish Journal of Medical Science, 190(3), 1071-1077. doi:10.1007/s11845-020-02414-0
Cody, F., Mullers, S., Flood, K., Unterscheider, J., Daly, S., Geary, M., et al. (2021). Correlation of maternal body mass index with umbilical artery Doppler in pregnancies complicated by fetal growth restriction and associated outcomes. International Journal of Gynecology and Obstetrics, 154(2), 352-357. doi:10.1002/ijgo.13586
Killeen, S. L., Phillips, C. M., Delahunt, A., Yelverton, C. A., Shivappa, N., Hébert, J. R., et al. (2021). Effect of an antenatal lifestyle intervention on dietary inflammatory index and its associations with maternal and fetal outcomes: A secondary analysis of the PEARS trial. Nutrients, 13(8). doi:10.3390/nu13082798
Kovacs, Z., Adamczyk, B., Reidy, F., McAuliffe, F. M., Rudd, P. M., Wingfield, M., et al. (2021). P–340 Novel non-invasive diagnostic options for endometriosis - based on glycome analysis. Human Reproduction, 36(Supplement_1). doi:10.1093/humrep/deab130.339
Hayes-Ryan, D., Khashan, A. S., Hemming, K., Easter, C., Devane, D., Murphy, D. J., et al. (2021). Placental growth factor in assessment of women with suspected pre-eclampsia to reduce maternal morbidity: A stepped wedge cluster randomised control trial (PARROT Ireland). The BMJ, 374. doi:10.1136/bmj.n1857
Doherty, J., Moore, R., Kivlehan, C., Byrne, D. F., Yelverton, C. A., Twomey, P., et al. (2021). Trends in Faecal Calprotectin Levels During Pregnancy in Non-IBD Patients. doi:10.21203/rs.3.rs-669247/v1
Professor Amanda McCann
Bates, M., Spillane, C. D., Gallagher, M. F., McCann, A., Martin, C., Blackshields, G., et al. (2020). The role of the MAD2-TLR4-MyD88 axis in paclitaxel resistance in ovarian cancer. PLoS ONE, 15(12 December). doi:10.1371/journal.pone.0243715
Ali, A., Zhang, F., Maguire, A., Byrne, T., Weiner-Gorzel, K., Bridgett, S., et al. (2020). Hdac6 degradation inhibits the growth of high-grade serous ovarian cancer cells. Cancers, 12(12), 1-20. doi:10.3390/cancers12123734
Howard, J., Wyse, C., Argyle, D., Quinn, C., Kelly, P., & McCann, A. (2020). Exosomes as Biomarkers of Human and Feline Mammary Tumours; A Comparative Medicine Approach to Unravelling the Aggressiveness of TNBC. Biochimica et Biophysica Acta - Reviews on Cancer, 1874(2). doi:10.1016/j.bbcan.2020.188431
Kavanagh, E. L., Halasz, M., Dowling, P., Withers, J., Lindsay, S., Higgins, M. J., et al. (2021). N-Linked glycosylation profiles of therapeutic induced senescent (TIS) triple negative breast cancer cells (TNBC) and their extracellular vesicle (EV) progeny. Molecular Omics, 17(1), 72-85. doi:10.1039/d0mo00017e
Conway, C., Collins, D. M., McCann, A., & Dean, K. (2021). Research strategies for low-survival cancers. Cancers, 13(3), 1-10. doi:10.3390/cancers13030528
Goh, C. Y., Patmore, S., Smolenski, A., Howard, J., Evans, S., O'Sullivan, J., & McCann, A. (2021). The role of von Willebrand factor in breast cancer metastasis. Translational Oncology, 14(4). doi:10.1016/j.tranon.2021.101033
Assoc Professor Margaret McGee
Brennan, K., Martin, K., FitzGerald, S. P., O’Sullivan, J., Wu, Y., Blanco, A., et al. (2020). A comparison of methods for the isolation and separation of extracellular vesicles from protein and lipid particles in human serum. Scientific Reports, 10(1). doi:10.1038/s41598-020-57497-7
Wu, Y., Brennan, K., Fernández, A. B., & Mc Gee, M. M. (2021). Cyclophilin A regulates secretion of tumour-derived extracellular vesicles. Translational Oncology, 14(8). doi:10.1016/j.tranon.2021.101112
Dr Fiona McGillicuddy
Curley, S., Gall, J., Byrne, R., Yvan-Charvet, L., & McGillicuddy, F. C. (2021). Metabolic Inflammation in Obesity—At the Crossroads between Fatty Acid and Cholesterol Metabolism. Molecular Nutrition and Food Research, 65(1). doi:10.1002/mnfr.201900482
Ralston, J. C., Mitchelson, K. A. J., Lynch, G. M., Tran, T. T. T., Wang, H., Strain, C. R., et al. (2021). Microbiome Transfer Partly Overrides Lack of IL-1RI Signaling to Alter Hepatic but not Adipose Tissue Phenotype and Lipid Handling following a High-Fat Diet Challenge. Molecular Nutrition and Food Research, 65(1). doi:10.1002/mnfr.202000202
Ahmed, M. O., Byrne, R. E., Pazderska, A., Segurado, R., Guo, W., Gunness, A., et al. (2021). HDL particle size is increased and HDL-cholesterol efflux is enhanced in type 1 diabetes: a cross-sectional study. Diabetologia, 64(3), 656-667. doi:10.1007/s00125-020-05320-3
Professor Edward McKone
Rowland, M., McGee, A., Broderick, A., Drumm, B., Connolly, L., Daly, L. E., et al. (2020). Repeatability of transient elastography in children. Pediatric Research, 88(4), 587-592. doi:10.1038/s41390-020-0916-4
McCarthy, C., Savinelli, S., Feeney, E. R., Butler, M. W., O'Broin, C., Ryan, S., et al. (2020). Tocilizumab therapy in individuals with COVID-19 infection and hyperinflammatory state. Respirology, 25(10), 1090-1094. doi:10.1111/resp.13912
McClenaghan, E., Cosgriff, R., Brownlee, K., Ahern, S., Burgel, P. R., Byrnes, C. A., et al. (2020). The global impact of SARS-CoV-2 in 181 people with cystic fibrosis. Journal of Cystic Fibrosis, 19(6), 868-871. doi:10.1016/j.jcf.2020.10.003
Fleming, H., Clifford, S. M., Haughey, A., MacDermott, R., McVeigh, N., Healy, G. M., et al. (2020). Differentiating combined pulmonary fibrosis and emphysema from pure emphysema: utility of late gadolinium-enhanced MRI. European Radiology Experimental, 4(1). doi:10.1186/s41747-020-00187-w
McNally, P., McKone, E., Cox, D., Linnane, B., Williamson, M., Elnazir, B., et al. (2021). P042 RECOVER - the Real World Clinical Outcomes with Novel Modulator therapy combinations in people with cystic fibrosis. Journal of Cystic Fibrosis, 20, S51. doi:10.1016/s1569-1993(21)01069-9
Hardisty, G. R., Law, S. M., Carter, S., Grogan, B., Singh, P. K., McKone, E. F., & Gray, R. D. (2021). Ivacaftor modifies cystic fibrosis neutrophil phenotype in subjects with R117H residual function CFTR mutations. European Respiratory Journal, 57(1). doi:10.1183/13993003.02161-2020
O'Shea, K. M., O'Carroll, O. M., Carroll, C., Grogan, B., Connolly, A., O'Shaughnessy, L., et al. (2021). Efficacy of elexacaftor/tezacaftor/ ivacaftor in patients with cystic fibrosis and advanced lung disease. European Respiratory Journal, 57(2). doi:10.1183/13993003.03079-2020
Carter, S. C., & McKone, E. F. (2021). CF pulmonary exacerbations–Steps in the right direction. Journal of Cystic Fibrosis, 20(1), 3-4. doi:10.1016/j.jcf.2020.11.001
Griese, M., Costa, S., Linnemann, R. W., Mall, M. A., McKone, E. F., Polineni, D., et al. (2021). Safety and efficacy of elexacaftor/tezacaftor/ivacaftor for 24 weeks or longer in people with cystic fibrosis and one or more F508del alleles: Interim results of an open-label phase 3 clinical trial. American Journal of Respiratory and Critical Care Medicine, 203(3), 381-385. doi:10.1164/rccm.202008-3176LE
McVeigh, N., Murphy, D. J., McKone, E., & Dodd, J. D. (2021). Obliterating airway bronchus sign of occult malignancy in sarcoid conglomerate fibrotic masses. Journal of Clinical Imaging Science, 11. doi:10.25259/JCIS_103_2020
McKone, E. F., DiMango, E. A., Sutharsan, S., Barto, T. L., Campbell, D., Ahluwalia, N., et al. (2021). A phase 3, randomized, double-blind, parallel-group study to evaluate tezacaftor/ivacaftor in people with cystic fibrosis heterozygous for F508del-CFTR and a gating mutation. Journal of Cystic Fibrosis, 20(2), 234-242. doi:10.1016/j.jcf.2020.11.003
McKone, E. F., Jackson, A. D., Fletcher, G., & Kirwan, L. (2021). Dornase alfa and rate of lung function decline in European patients with cystic fibrosis: A retrospective registry cohort study. Journal of Cystic Fibrosis, 20(3), 552-554. doi:10.1016/j.jcf.2020.08.004
Zemanick, E. T., Taylor-Cousar, J. L., Davies, J., Gibson, R. L., Mall, M. A., McKone, E. F., et al. (2021). A phase 3 open-label study of elexacaftor/tezacaftor/ivacaftor in children 6 through 11 years of age with cystic fibrosis and at least one F508del allele. American Journal of Respiratory and Critical Care Medicine, 203(12), 1522-1532. doi:10.1164/rccm.202102-0509OC
Naehrlich, L., Orenti, A., Dunlevy, F., Kasmi, I., Harutyunyan, S., Pfleger, A., et al. (2021). Incidence of SARS-CoV-2 in people with cystic fibrosis in Europe between February and June 2020. Journal of Cystic Fibrosis, 20(4), 566-577. doi:10.1016/j.jcf.2021.03.017
Carr, S. B., Cosgriff, R., Harutyunyan, S., Middleton, P. G., Ruseckaite, R., Ahern, S., et al. (2021). COVID-19 vaccine prioritisation for people with cystic fibrosis. Journal of Cystic Fibrosis, 20(4), 715-716. doi:10.1016/j.jcf.2021.03.028
Flume, P. A., Biner, R. F., Downey, D. G., Brown, C., Jain, M., Fischer, R., et al. (2021). Long-term safety and efficacy of tezacaftor–ivacaftor in individuals with cystic fibrosis aged 12 years or older who are homozygous or heterozygous for Phe508del CFTR (EXTEND): an open-label extension study. The Lancet Respiratory Medicine, 9(7), 733-746. doi:10.1016/S2213-2600(20)30510-5
Rehman, T., Karp, P. H., Tan, P., Goodell, B. J., Pezzulo, A. A., Thurman, A. L., et al. (2021). Inflammatory cytokines TNF-a and IL-17 enhance the efficacy of cystic fibrosis transmembrane conductance regulator modulators. Journal of Clinical Investigation, 131(16). doi:10.1172/JCI150398
Barry, P. J., Mall, M. A., Álvarez, A., Colombo, C., de Winter-De Groot, K. M., Fajac, I., et al. (2021). Triple therapy for cystic fibrosis Phe508del-gating and -residual function genotypes. New England Journal of Medicine, 385(9), 815-825. doi:10.1056/NEJMoa2100665
Professor Paul McLoughlin
Kostyunina, D. S., & McLoughlin, P. (2021). Sex dimorphism in pulmonary hypertension: The role of the sex chromosomes. Antioxidants, 10(5). doi:10.3390/antiox10050779

Professor Walter McNicholas
O'Donnell, C., Ryan, S., & McNicholas, W. T. (2020). The Impact of Telehealth on the Organization of the Health System and Integrated Care. Sleep Medicine Clinics, 15(3), 431-440. doi:10.1016/j.jsmc.2020.06.003
O'Mahony, A. M., Garvey, J. F., & McNicholas, W. T. (2020). Technologic advances in the assessment and management of obstructive sleep apnoea beyond the apnoea-hypopnoea index: A narrative review. Journal of Thoracic Disease, 12(9), 5020-5038. doi:10.21037/jtd-sleep-2020-003
Marrone, O., Cibella, F., Roisman, G., Sliwinski, P., Joppa, P., Basoglu, O. K., et al. (2020). Effects of sleep apnea and kidney dysfunction on objective sleep quality in nondialyzed patients with chronic kidney disease: An ESADA study. Journal of Clinical Sleep Medicine, 16(9), 1475-1481. doi:10.5664/jcsm.8542
Gunduz, C., Basoglu, O. K., Kvamme, J. A., Verbraecken, J., Anttalainen, U., Marrone, O., et al. (2020). Long-term positive airway pressure therapy is associated with reduced total cholesterol levels in patients with obstructive sleep apnea: data from the European Sleep Apnea Database (ESADA). Sleep Medicine, 75, 201-209. doi:10.1016/j.sleep.2020.02.023
Bonsignore, M. R., Randerath, W., Schiza, S., Verbraecken, J., Elliott, M. W., Riha, R., et al. (2021). European Respiratory Society statement on sleep apnoea, sleepiness and driving risk. European Respiratory Journal, 57(2). doi:10.1183/13993003.01272-2020
Riha, R. L., Kotoulas, S. C., Pataka, A., Kvamme, J. A., Joppa, P., Hedner, J., et al. (2021). Obstructive sleep apnoea in adult patients post-tonsillectomy. Sleep Medicine, 78, 189-192. doi:10.1016/j.sleep.2020.11.024
Bailly, S., Grote, L., Hedner, J., Schiza, S., McNicholas, W. T., Basoglu, O. K., et al. (2021). Clusters of sleep apnoea phenotypes: A large pan-European study from the European Sleep Apnoea Database (ESADA). Respirology, 26(4), 378-387. doi:10.1111/resp.13969
Peker, Y., Ozaydin, A. N., Cetinkaya, R., Kabadayi, E., Karakucuk, A. G., Celik, Y., & McNicholas, W. T. (2021). Reliability of the Turkish version of the European Obstructive Sleep Apnea Screening (EUROSAS) questionnaire for drivers. Sleep and Breathing, 25(2), 907-913. doi:10.1007/s11325-020-02201-2
Penzel, T., Pevernagie, D., Bassetti, C., Peigneux, P., Paunio, T., McNicholas, W. T., et al. (2021). Sleep medicine catalogue of knowledge and skills – Revision. Journal of Sleep Research, 30(3). doi:10.1111/jsr.13394
O’Donnell, C., O’Mahony, A. M., McNicholas, W. T., & Ryan, S. (2021). Cardiovascular manifestations in obstructive sleep apnea: Current evidence and potential mechanisms. Polish Archives of Internal Medicine, 131(6), 550-560. doi:10.20452/pamw.16041
Crinion, S. J., Kleinerova, J., Kent, B., Nolan, G., Taylor, C. T., Ryan, S., & McNicholas, W. T. (2021). Non-dipping nocturnal blood pressure correlates with obstructive sleep apnoea severity in normotensive subjects and may reverse with therapy. ERJ Open Research, 7(3). doi:10.1183/23120541.00338-2021
Bonsignore, M. R., Pepin, J. L., Cibella, F., Barbera, C. D., Marrone, O., Verbraecken, J., et al. (2021). Excessive Daytime Sleepiness in Obstructive Sleep Apnea Patients Treated With Continuous Positive Airway Pressure: Data From the European Sleep Apnea Database. Frontiers in Neurology, 12. doi:10.3389/fneur.2021.690008
Dr Kieran Meade
Taaffe, P., O’Meara, C., Eivers, B., Bernecic, N., Meade, K., Lonergan, P., & Fair, S. (2020). Vitamin D and peri-pubertal bull fertility. Animal Reproduction Science, 220, 106437. doi:10.1016/j.anireprosci.2020.106437
Mallikarjunappa, S., Shandilya, U. K., Sharma, A., Lamers, K., Bissonnette, N., Karrow, N. A., & Meade, K. G. (2020). Functional analysis of bovine interleukin-10 receptor alpha in response to Mycobacterium avium subsp. paratuberculosis lysate using CRISPR/Cas9. BMC Genetics, 21(1). doi:10.1186/s12863-020-00925-4
Brewer, A., Cormican, P., Lim, J. J., Chapwanya, A., O’Farrelly, C., & Meade, K. G. (2020). Qualitative and quantitative differences in endometrial inflammatory gene expression precede the development of bovine uterine disease. Scientific Reports, 10(1). doi:10.1038/s41598-020-75104-7
Lyons, T., Jahns, H., Brady, J., O’Hara, E., Waters, S. M., Kenny, D., et al. (2020). Integrated analyses of the microbiological, immunological and ontological transitions in the calf ileum during early life. Scientific Reports, 10(1). doi:10.1038/s41598-020-77907-0
O'Brien, M. B., Beynon, C. L., McLoughlin, R. M., & Meade, K. G. (2021). The immune response in bovine primary dermal fibroblasts is influenced by Interleukin 8 promoter haplotype and vitamin D. Veterinary Immunology and Immunopathology, 238. doi:10.1016/j.vetimm.2021.110291
De Matteis, G., Scatà, M. C., Grandoni, F., Crisà, A., O'Brien, M. B., Meade, K. G., & Catillo, G. (2021). Effect of IL8 haplotype on immunological traits in periparturient dairy cows. Veterinary Immunology and Immunopathology, 238. doi:10.1016/j.vetimm.2021.110288
O'Brien, M. B., McLoughlin, R. M., Roche, C., Nelson, C. D., & Meade, K. G. (2021). Effect of IL-8 haplotype on temporal profile in circulating concentrations of interleukin 8 and 25(OH) vitamin D in Holstein-Friesian calves. Veterinary Immunology and Immunopathology, 238. doi:10.1016/j.vetimm.2021.110287
Mallikarjunappa, S., Brito, L. F., Pant, S. D., Schenkel, F. S., Meade, K. G., & Karrow, N. A. (2021). Johne's Disease in Dairy Cattle: An Immunogenetic Perspective. Frontiers in Veterinary Science, 8. doi:10.3389/fvets.2021.718987
Professor Wim Meijer
Ballesté, E., Demeter, K., Masterson, B., Timoneda, N., Sala-Comorera, L., & Meijer, W. G. (2020). Implementation and integration of microbial source tracking in a river watershed monitoring plan. Science of the Total Environment, 736. doi:10.1016/j.scitotenv.2020.139573
Reynolds, L. J., Sala-Comorera, L., Martin, N. A., Nolan, T. M., Stephens, J. H., Gitto, A., et al. (2020). Correlation between antimicrobial resistance and faecal contamination in small urban streams and bathing waters. Science of the Total Environment, 739. doi:10.1016/j.scitotenv.2020.140242
Reynolds, L. J., Martin, N. A., Sala-Comorera, L., Callanan, K., Doyle, P., O’Leary, C., et al. (2022). Identifying Sources of Faecal Contamination in a Small Urban Stream Catchment: A Multiparametric Approach. Frontiers in Microbiology, 12. doi:10.3389/fmicb.2021.661954
Reynolds, L. J., Martin, N. A., Sala-Comorera, L., Callanan, K., Doyle, P., O’Leary, C., et al. (2021). Identifying Sources of Faecal Contamination in a Small Urban Stream Catchment: A Multiparametric Approach. Frontiers in Microbiology, 12. doi:10.3389/fmicb.2021.661954
Sala-Comorera, L., Nolan, T. M., Reynolds, L. J., Venkatesh, A., Cheung, L., Martin, N. A., et al. (2021). Bacterial and Bacteriophage Antibiotic Resistance in Marine Bathing Waters in Relation to Rivers and Urban Streams. Frontiers in Microbiology, 12. doi:10.3389/fmicb.2021.718234
Sala-Comorera, L., Nolan, T. M., Reynolds, L. J., Venkatesh, A., Cheung, L., Martin, N. A., et al. (2022). Bacterial and Bacteriophage Antibiotic Resistance in Marine Bathing Waters in Relation to Rivers and Urban Streams. Frontiers in Microbiology, 12. doi:10.3389/fmicb.2021.718234
Sala-Comorera, L., Reynolds, L. J., Martin, N. A., O'Sullivan, J. J., Meijer, W. G., & Fletcher, N. F. (2021). Decay of infectious SARS-CoV-2 and surrogates in aquatic environments. Water Research, 201. doi:10.1016/j.watres.2021.117090
Brandão, J., Gangneux, J. P., Arikan-Akdagli, S., Barac, A., Bostanaru, A. C., Brito, S., et al. (2021). Mycosands: Fungal diversity and abundance in beach sand and recreational waters — Relevance to human health. Science of the Total Environment, 781. doi:10.1016/j.scitotenv.2021.146598
Furuta, Y., Cheng, C., Zorigt, T., Paudel, A., Izumi, S., Tsujinouchi, M., et al. (2021). Direct regulons of atxa, the master virulence regulator of bacillus anthracis. mSystems, 6(4). doi:10.1128/mSystems.00291-21
Professor Grace Mulcahy
Naranjo-Lucena, A., García-Campos, A., Garza-Cuartero, L., Britton, L., Blanco, A., Zintl, A., & Mulcahy, G. (2020). Fasciola hepatica products can alter the response of bovine immune cells to Mycobacterium avium subsp. paratuberculosis. Parasite Immunology, 42(11). doi:10.1111/pim.12779
Walshe, N., Mulcahy, G., Hodgkinson, J., & Peachey, L. (2020). No worm is an island; the influence of commensal gut microbiota on cyathostomin infections. Animals, 10(12), 1-13. doi:10.3390/ani10122309
Niedziela, D., Naranjo-Lucena, A., Molina-Hernández, V., Browne, J., Martínez-Moreno, Á., Pérez, J., et al. (2021). Timing of transcriptomic peripheral blood mononuclear cell responses of sheep to <i>Fasciola hepatica</i> infection differs from those of cattle, reflecting different disease phenotypes. doi:10.1101/2021.06.21.449266
Walshe, N., Fennelly, M., Hellebust, S., Wenger, J., Sodeau, J., Prentice, M., et al. (2021). Assessment of Environmental and Occupational Risk Factors for the Mitigation and Containment of a COVID-19 Outbreak in a Meat Processing Plant. doi:10.1101/2021.09.17.21262959
Naranjo-Lucena, A., Correia, C. N., Molina-Hernández, V., Martínez-Moreno, A., Browne, J. A., Pérez, J., et al. (2021). Transcriptomic Analysis of Ovine Hepatic Lymph Node Following Fasciola hepatica Infection – Inhibition of NK Cell and IgE-Mediated Signaling. Frontiers in Immunology, 12. doi:10.3389/fimmu.2021.687579
Walshe, N., Cabrera-Rubio, R., Collins, R., Puggioni, A., Gath, V., Crispie, F., et al. (2021). A Multiomic Approach to Investigate the Effects of a Weight Loss Program on the Intestinal Health of Overweight Horses. Frontiers in Veterinary Science, 8. doi:10.3389/fvets.2021.668120
Walshe, N., Mulcahy, G., Crispie, F., Cabrera-Rubio, R., Cotter, P., Jahns, H., & Duggan, V. (2021). Outbreak of acute larval cyathostominosis – A “perfect storm” of inflammation and dysbiosis. Equine Veterinary Journal, 53(4), 727-739. doi:10.1111/evj.13350
Dr Madeline Murphy
Dorris, E. R., Russell, J., & Murphy, M. (2021). Post-intubation subglottic stenosis: Aetiology at the cellular and molecular level. European Respiratory Review, 30(159), 1-15. doi:10.1183/16000617.0218-2020
Weiner-Gorzel, K., & Murphy, M. (2021). Mitochondrial dynamics, a new therapeutic target for Triple Negative Breast Cancer. Biochimica et Biophysica Acta - Reviews on Cancer, 1875(2). doi:10.1016/j.bbcan.2021.188518
Assoc Professor Fionnuala Ní Aínle
Andrew, L., Ní Áinle, F., Blondon, M., Rodger, M. A., & Skeith, L. (2020). Preventing postpartum venous thromboembolism: A call to action to reduce undue maternal morbidity and mortality. Thrombosis Research, 193, 190-197. doi:10.1016/j.thromres.2020.07.007
Hobohm, L., Keller, K., Valerio, L., Ni Ainle, F., Klok, F. A., Münzel, T., et al. (2020). Fatality rates and use of systemic thrombolysis in pregnant women with pulmonary embolism. ESC Heart Failure, 7(5), 2365-2372. doi:10.1002/ehf2.12775
O'Shaughnessy, F., O'Reilly, D., & Ní Áinle, F. (2020). Current opinion and emerging trends on the treatment, diagnosis, and prevention of pregnancy-associated venous thromboembolic disease: a review. Translational Research, 225, 20-32. doi:10.1016/j.trsl.2020.06.004
Áinle, F. N., & Kevane, B. (2020). Which patients are at high risk of recurrent venous thromboembolism (deep vein thrombosis and pulmonary embolism)?. Blood Advances, 4(21), 5595-5606. doi:10.1182/bloodadvances.2020002268
Kelliher, S., Maguire, P. B., Szklanna, P. B., Weiss, L., Ewins, K., O'Doherty, R., et al. (2020). Pathophysiology of the Venous Thromboembolism Risk in Preeclampsia. Hamostaseologie, 40(5), 594-604. doi:10.1055/a-1162-3905
Ní Áinle, F., & Kevane, B. (2020). Which patients are at high risk of recurrent venous thromboembolism (deep vein thrombosis and pulmonary embolism)?. Hematology (United States), 20(1), 201-212. doi:10.1182/HEMATOLOGY.2020002268
Le Gal, G., Carrier, M., Castellucci, L. A., Cuker, A., Hansen, J. B., Klok, F. A., et al. (2021). Development and implementation of common data elements for venous thromboembolism research: on behalf of SSC Subcommittee on official Communication from the SSC of the ISTH. Journal of Thrombosis and Haemostasis, 19(1), 297-303. doi:10.1111/jth.15138
Enright, S., Varadkar, S., Demaio, A., Flynn, C., Ni Áinle, F., & Hehir, M. P. (2021). Antecedents of red cell transfusion in a large contemporary obstetric cohort. Journal of Perinatal Medicine, 47(2), 195-199. doi:10.1515/jpm-2018-0227
Mooney, C., Eogan, M., Ní Áinle, F., Cleary, B., Gallagher, J. J., O'Loughlin, J., & Drew, R. J. (2021). Predicting bacteraemia in maternity patients using full blood count parameters: A supervised machine learning algorithm approach. International Journal of Laboratory Hematology, 43(4), 609-615. doi:10.1111/ijlh.13434
Professor Niamh Nowlan
Silva Barreto, I., Le Cann, S., Ahmed, S., Sotiriou, V., Turunen, M. J., Johansson, U., et al. (2020). Multiscale Characterization of Embryonic Long Bone Mineralization in Mice. Advanced Science, 7(21). doi:10.1002/advs.202002524
Ghosh, A. K., Burniston, S. F., Krentzel, D., Roy, A., Sheikh, A. S., Siddiq, T., et al. (2020). A novel fetal movement simulator for the performance evaluation of vibration sensors for wearable fetal movement monitors. Sensors (Switzerland), 20(21), 1-22. doi:10.3390/s20216020
Khatib, N., Parisi, C., & Nowlan, N. C. (2021). Differential effect of frequency and duration of mechanical loading on fetal chick cartilage and bone development. European Cells and Materials, 41, 531-545. doi:10.22203/eCM.v041a34
Levillain, A., Ahmed, S., Kaimaki, D. M., Schuler, S., Barros, S., Labonte, D., et al. (2021). Prenatal muscle forces are necessary for vertebral segmentation and disc structure, but not for notochord involution in mice. European Cells and Materials, 41, 558-575. doi:10.22203/eCM.v041a36
Lawrence, E. A., Pei, J., Hammond, C., Aggleton, J., van Loon, J., Godivier, J., et al. (2021). Exposure to hypergravity during zebrafish development alters cartilage material properties and strain distribution. Bone and Joint Research, 10(2), 137-148. doi:10.1302/2046-3758.102.BJR-2020-0239.R1
Bridglal, D. L., Boyle, C. J., Rolfe, R. A., & Nowlan, N. C. (2021). Quantifying the tolerance of chick hip joint development to temporary paralysis and the potential for recovery. Developmental Dynamics, 250(3), 450-464. doi:10.1002/dvdy.236
Pierantoni, M., Le Cann, S., Sotiriou, V., Ahmed, S., Bodey, A. J., Jerjen, I., et al. (2021). Muscular loading affects the 3D structure of both the mineralized rudiment and growth plate at early stages of bone formation. Bone, 145. doi:10.1016/j.bone.2021.115849
Assoc Professor Eoin O'Cearbhaill
Krieger, K. J., Liegey, J., Cahill, E. M., Bertollo, N., Lowery, M. M., & O'Cearbhaill, E. D. (2020). Development and Evaluation of 3D-Printed Dry Microneedle Electrodes for Surface Electromyography. Advanced Materials Technologies, 5(10). doi:10.1002/admt.202000518
Byrne, O., Coulter, F., Roche, E. T., & O'Cearbhaill, E. D. (2021). In silico design of additively manufacturable composite synthetic vascular conduits and grafts with tuneable compliance. Biomaterials Science, 9(12), 4343-4355. doi:10.1039/d0bm02169e
Coulter, F. B., Levey, R. E., Robinson, S. T., Dolan, E. B., Deotti, S., Monaghan, M., et al. (2021). Additive Manufacturing of Multi-Scale Porous Soft Tissue Implants That Encourage Vascularization and Tissue Ingrowth. Advanced Healthcare Materials, 10(14). doi:10.1002/adhm.202100229
Coulter, F. B., Levey, R. E., Robinson, S. T., Dolan, E. B., Deotti, S., Monaghan, M., et al. (2021). Soft Tissue Implants: Additive Manufacturing of Multi-Scale Porous Soft Tissue Implants That Encourage Vascularization and Tissue Ingrowth (Adv. Healthcare Mater. 14/2021). Advanced Healthcare Materials, 10(14), 2170063. doi:10.1002/adhm.202170063
Assoc Professor David O'Connell
McGauran, G., Dorris, E., Borza, R., Morgan, N., Shields, D. C., Matallanas, D., et al. (2020). Resolving the Interactome of the Human Macrophage Immunometabolism Regulator (MACIR) with Enhanced Membrane Protein Preparation and Affinity Proteomics. Proteomics, 20(19-20). doi:10.1002/pmic.202000062
Pajenda, S., Zawedde, F., Kapps, S., Wagner, L., Schmidt, A., Winnicki, W., et al. (2021). Urinary C3 levels associated with sepsis and acute kidney injury-A pilot study.. PloS one, 16(11), e0259777. doi:10.1371/journal.pone.0259777
Reiter, T., Pajenda, S., O'Connell, D., Lynch, C., Kapps, S., Agis, H., et al. (2021). Renal Expression of Light Chain Binding Proteins. Frontiers in Medicine, 7. doi:10.3389/fmed.2020.609582
Professor Kevin O'Connor
O'connor, K. E. (2021). Microbiology challenges and opportunities in the circular economy. Microbiology (United Kingdom), 167(1), 1-3. doi:10.1099/mic.0.001026
Malagurski, I., Frison, R., Maurya, A. K., Neels, A., Andjelkovic, B., Senthamaraikannan, R., et al. (2021). Polyhydroxyoctanoate films reinforced with titanium dioxide microfibers for biomedical application. Materials Letters, 285. doi:10.1016/j.matlet.2020.129100
Pekmezovic, M., Krusic, M. K., Malagurski, I., Milovanovic, J., Stepien, K., Guzik, M., et al. (2021). Polyhydroxyalkanoate/antifungal polyene formulations with monomeric hydroxyalkanoic acids for improved antifungal efficiency. Antibiotics, 10(6). doi:10.3390/antibiotics10060737
Tiso, T., Narancic, T., Wei, R., Pollet, E., Beagan, N., Schröder, K., et al. (2021). Towards bio-upcycling of polyethylene terephthalate. Metabolic Engineering, 66, 167-178. doi:10.1016/j.ymben.2021.03.011
Professor Stefan Oscarson
Reihill, M., Guazzelli, L., Remaut, H., & Oscarson, S. (2020). Synthesis of fucose derivatives with thiol motifs towards suicide inhibition of helicobacter pylori. Molecules, 25(18). doi:10.3390/molecules25184281
Ní Cheallaigh, A., Guimond, S. E., Oscarson, S., & Miller, G. J. (2020). Chemical synthesis of a sulfated D-glucosamine library and evaluation of cell proliferation capabilities. Carbohydrate Research, 495. doi:10.1016/j.carres.2020.108085
Guazzelli, L., Crawford, C. J., Ulc, R., Bowen, A., McCabe, O., Jedlicka, A. J., et al. (2020). A synthetic glycan array containing: Cryptococcus neoformans glucuronoxylomannan capsular polysaccharide fragments allows the mapping of protective epitopes. Chemical Science, 11(34), 9209-9217. doi:10.1039/d0sc01249a
Hassan, A. A., & Oscarson, S. (2020). A General Method for the Divergent Synthesis of C-9 Functionalised Sialic Acid Derivatives. European Journal of Organic Chemistry, 2020(38), 6102-6108. doi:10.1002/ejoc.202001049
Crawford, C. J., & Oscarson, S. (2020). Convergent total synthesis of Cryptococcus neoformans serotype B capsule repeating motif. Carbohydrate Research, 497. doi:10.1016/j.carres.2020.108150
Khanna, K., Raymond, W., Jin, J., Charbit, A. R., Gitlin, I., Tang, M., et al. (2020). Thiol drugs decrease SARS-CoV-2 lung injury <i>in vivo</i> and disrupt SARS-CoV-2 spike complex binding to ACE2 <i>in vitro</i>. doi:10.1101/2020.12.08.415505
Martínez, J. D., Manzano, A. I., Calviño, E., Diego, A. D., Rodriguez De Francisco, B., Romanò, C., et al. (2020). Fluorinated Carbohydrates as Lectin Ligands: Simultaneous Screening of a Monosaccharide Library and Chemical Mapping by <sup>19</sup>F NMR Spectroscopy. Journal of Organic Chemistry, 85(24), 16072-16081. doi:10.1021/acs.joc.0c01830
Crawford, C., Wear, M. P., Smith, D. F. Q., d'Errico, C., McConnell, S., Casadevall, A., & Oscarson, S. (2020). A Glycan FRET Assay for Detection and Characterization of Catalytic Antibodies to the Cryptococcus neoformans Capsule. doi:10.26434/chemrxiv.12144699.v3
Crawford, C., Wear, M. P., Smith, D. F. Q., d'Errico, C., McConnell, S., Casadevall, A., & Oscarson, S. (2020). A Glycan FRET Assay for Detection and Characterization of Catalytic Antibodies to the Cryptococcus neoformans Capsule. doi:10.26434/chemrxiv.12144699
Crawford, C. J., Wear, M. P., Smith, D. F. Q., d'Errico, C., McConnell, S. A., Casadevall, A., & Oscarson, S. (2021). A glycan FRET assay for detection and characterization of catalytic antibodies to the Cryptococcus neoformans capsule. Proceedings of the National Academy of Sciences of the United States of America, 118(5). doi:10.1073/PNAS.2016198118
Diercks, T., Medrano, F. J., FitzGerald, F. G., Beckwith, D., Pedersen, M. J., Reihill, M., et al. (2021). Galectin–Glycan Interactions: Guidelines for Monitoring by <sup>77</sup>Se NMR Spectroscopy, and Solvent (H<inf>2</inf>O/D<inf>2</inf>O) Impact on Binding. Chemistry - A European Journal, 27(1), 316-325. doi:10.1002/chem.202003143
Nestor, G., Ruda, A., Anderson, T., Oscarson, S., Widmalm, G., & Gronenborn, A. M. (2021). A detailed picture of a protein-carbohydrate hydrogen-bonding network revealed by NMR and MD simulations. Glycobiology, 31(4), 508-518. doi:10.1093/glycob/cwaa081
Crawford, C. J., Qiao, Y., Liu, Y., Huang, D., Yan, W., Seeberger, P. H., et al. (2021). Defining the Qualities of High-Quality Palladium on Carbon Catalysts for Hydrogenolysis. Organic Process Research and Development, 25(7), 1573-1578. doi:10.1021/acs.oprd.0c00536
Hassan, A. A., & Oscarson, S. (2021). Facile anomer-oriented syntheses of 4-methylumbelliferyl sialic acid glycosides. Organic and Biomolecular Chemistry, 19(30), 6644-6649. doi:10.1039/d1ob00877c
Professor Donal O'Shea
Lynch, M., Malara, A., Timoney, I., Ahern, T., Awdeh, F., Sweeney, C., et al. (2021). Dipeptidyl Peptidase-4 Inhibition in Psoriasis Patients with Diabetes: A Double-Blind Randomized Controlled Trial. Dermatology, 237(1), 66-69. doi:10.1159/000502130
Chin, J. L., O'Connell, J., Muldoon, C., Swan, N., Reynolds, J. V., Ravi, N., et al. (2021). Selective Resection of Type 1 Gastric Neuroendocrine Neoplasms and the Risk of Progression in an Endoscopic Surveillance Programme. Digestive Surgery, 38(1), 38-45. doi:10.1159/000510962
Watchorn, D., O'Shea, D., & Butler, M. W. (2021). Asthma exacerbations in individuals on glucagon-like peptide-1 receptor agonists for type 2 diabetes. American Journal of Respiratory and Critical Care Medicine, 203(7), 923-924. doi:10.1164/rccm.202011-4162LE
McCarthy, C., O'Donnell, C. P., Kelly, N. E. W., O'Shea, D., & Hogan, A. E. (2021). COVID-19 severity and obesity: are MAIT cells a factor?. The Lancet Respiratory Medicine, 9(5), 445-447. doi:10.1016/S2213-2600(21)00140-5
Gildea, N., McDermott, A., Rocha, J., O'Shea, D., Green, S., & Egaña, M. (2021). Time-course of V<sup>-</sup>O<inf>2</inf> kinetics responses during moderate-intensity exercise subsequent to HIIT versus moderate-intensity continuous training in type 2 diabetes. Journal of Applied Physiology, 130(6), 1646-1659. doi:10.1152/japplphysiol.00952.2020
Assoc Professor Niamh O'Sullivan
Fowler, P. C., Byrne, D. J., Blackstone, C., & O’sullivan, N. C. (2020). Loss of the mitochondrial fission GTPase Drp1 contributes to neurodegeneration in a drosophila model of hereditary spastic paraplegia. Brain Sciences, 10(9), 1-18. doi:10.3390/brainsci10090646
Professor Stephen Pennington
Jadon, D. R., Stober, C., Pennington, S. R., & FitzGerald, O. (2020). Applying precision medicine to unmet clinical needs in psoriatic disease. Nature Reviews Rheumatology, 16(11), 609-627. doi:10.1038/s41584-020-00507-9
Bell, S., Merola, J. F., Webster, D. E., Pennington, S. R., Liao, W., Ogdie, A., et al. (2020). Aiming for Cure and Preventive Initiatives in Psoriatic Disease: Building Synergy at NPF, GRAPPA, and PPACMAN. Current Rheumatology Reports, 22(11). doi:10.1007/s11926-020-00958-9
Tonry, C., Finn, S., Armstrong, J., & Pennington, S. R. (2020). Clinical proteomics for prostate cancer: understanding prostate cancer pathology and protein biomarkers for improved disease management. Clinical Proteomics, 17(1). doi:10.1186/s12014-020-09305-7
Bringans, S., Ito, J., Casey, T., Thomas, S., Peters, K., Crossett, B., et al. (2020). A robust multiplex immunoaffinity mass spectrometry assay (PromarkerD) for clinical prediction of diabetic kidney disease. Clinical Proteomics, 17(1). doi:10.1186/s12014-020-09302-w
Flynn, L., Barr, M. P., Baird, A. M., Smyth, P., Casey, O. M., Blackshields, G., et al. (2020). Prostate cancer-derived holoclones: a novel and effective model for evaluating cancer stemness. Scientific Reports, 10(1). doi:10.1038/s41598-020-68187-9
Adhikari, S., Nice, E. C., Deutsch, E. W., Lane, L., Omenn, G. S., Pennington, S. R., et al. (2020). A high-stringency blueprint of the human proteome. Nature Communications, 11(1). doi:10.1038/s41467-020-19045-9
Omenn, G. S., Lane, L., Overall, C. M., Cristea, I. M., Corrales, F. J., Lindskog, C., et al. (2020). Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project. Journal of Proteome Research, 19(12), 4735-4746. doi:10.1021/acs.jproteome.0c00485
Stober, C., Jadon, D. R., Armstrong, A. W., Chandran, V., de Wit, M., Helliwell, P. S., et al. (2021). Proceedings of the 2020 GRAPPA Collaborative Research Network (CRN) Meeting.. The Journal of rheumatology. Supplement, 97, 4-9. doi:10.3899/jrheum.201667
Stober, C., Jadon, D. R., Armstrong, A. W., Chandran, V., de Wit, M., Helliwell, P. S., et al. (2021). Proceedings of the 2020 GRAPPA Collaborative Research Network (CRN) Meeting. The Journal of rheumatology. Supplement, 97, 4-9. doi:10.3899/jrheum.201667
Tonry, C., McDonald, K., Ledwidge, M., Hernandez, B., Glezeva, N., Rooney, C., et al. (2021). Multiplexed measurement of candidate blood protein biomarkers of heart failure. ESC Heart Failure, 8(3), 2248-2258. doi:10.1002/ehf2.13320
Pennington, S. R., & FitzGerald, O. (2021). Early Origins of Psoriatic Arthritis: Clinical, Genetic and Molecular Biomarkers of Progression From Psoriasis to Psoriatic Arthritis. Frontiers in Medicine, 8. doi:10.3389/fmed.2021.723944
Assoc Professor Antoinette Perry
Schilling, S., Dowling, C. A., Shi, J., Ryan, L., Hunt, D., OReilly, E., et al. (2020). The Cream of the Crop: Biology, Breeding and Applications of Cannabis sativa. doi:10.22541/au.160139712.25104053
Schilling, S., Dowling, C. A., Shi, J., Ryan, L., Hunt, D., OReilly, E., et al. (2020). The Cream of the Crop: Biology, Breeding and Applications of Cannabis sativa. doi:10.22541/au.160139712.25104053/v2
Schilling, S., Dowling, C. A., Shi, J., Ryan, L., Hunt, D. J. L., O’Reilly, E., et al. (2021). The cream of the crop: Biology, breeding, and applications of Cannabis sativa. Annual Plant Reviews Online, 4(2), 471-528. doi:10.1002/9781119312994.apr0740
Tomer, A., Nieboer, D., Roobol, M. J., Bjartell, A., Steyerberg, E. W., Rizopoulos, D., et al. (2021). Personalised biopsy schedules based on risk of Gleason upgrading for patients with low-risk prostate cancer on active surveillance. BJU International, 127(1), 96-107. doi:10.1111/bju.15136
Dr Andrew Phillips
Lee, B. Y. T., Phillips, A. D., Hanif, M., Tong, K. K. H., Söhnel, T., & Hartinger, C. G. (2021). Heptadentate, Octadentate, or even Nonadentate? Denticity in the Unexpected Formation of an All-Carbon Donor-Atom Ligand in Rh<sup>III</sup>(Cp)(Anthracenyl-NHC) Complexes. Inorganic Chemistry*, 60(12), 8734-8741. doi:10.1021/acs.inorgchem.1c00711
Dr Maria Prencipe
Kumari, P., Pillai, V. V. S., Rodriguez, B. J., Prencipe, M., & Benedetto, A. (2020). Sub-toxic concentrations of ionic liquids enhance cell migration by reducing the elasticity of the cellular lipid membrane. Journal of Physical Chemistry Letters, 11(17), 7327-7333. doi:10.1021/acs.jpclett.0c02149
Watson, W., Gonzalez, C., Russell, N., Azam, H., Corey, E., Morrissey, C., et al. (2020). Inhibition of serum response factor as a new strategy to overcome resistance to enzalutamide in prostate cancer. European Journal of Cancer, 138, S49. doi:10.1016/S0959-8049(20)31207-7
Watson, R. W., Azam, H., Aura, C., Russell, N., McCormack, J., Corey, E., et al. (2020). Inhibition of serum response factor improves response to enzalutamide in prostate cancer. Cancers, 12(12), 1-13. doi:10.3390/cancers12123540
Professor Prem Puri
Nakamura, H., Doi, T., Puri, P., & Friedmacher, F. (2020). Transgenic animal models of congenital diaphragmatic hernia: a comprehensive overview of candidate genes and signaling pathways. Pediatric Surgery International, 36(9), 991-997. doi:10.1007/s00383-020-04705-0
Darlow, J. M., Dobson, M. G., Green, A. J., Puri, P., & Barton, D. E. (2020). Investigation of DNA variants specific to ROBO2 Isoform ‘a’ in Irish vesicoureteric reflux patients reveals marked CpG island variation. Scientific Reports, 10(1). doi:10.1038/s41598-020-58818-6
Duess, J. W., Gosemann, J. H., Puri, P., & Thompson, J. (2020). Teratogenesis in the chick embryo following post-gastrulation exposure to Y-27632 -effect of Y-27632 on embryonic development. Toxicology and Applied Pharmacology, 409. doi:10.1016/j.taap.2020.115277
Takahashi, T., Friedmacher, F., Zimmer, J., & Puri, P. (2021). Pbx1, Meis1, and Runx1 Expression Is Decreased in the Diaphragmatic and Pulmonary Mesenchyme of Rats with Nitrofen-Induced Congenital Diaphragmatic Hernia. European Journal of Pediatric Surgery, 31(1), 120-125. doi:10.1055/s-0040-1714736
Verbitsky, M., Krithivasan, P., Batourina, E., Khan, A., Graham, S. E., Marasà, M., et al. (2021). Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.. Journal of the American Society of Nephrology : JASN, ASN.2020050681. doi:10.1681/asn.2020050681
Puri, P. (2021). The 33rd international symposium on pediatric surgical research. Pediatric Surgery International, 37(3), 299. doi:10.1007/s00383-020-04815-9
Dr Sergio Rey
Schito, L., & Rey, S. (2020). Hypoxia: Turning vessels into vassals of cancer immunotolerance. Cancer Letters, 487, 74-84. doi:10.1016/j.canlet.2020.05.015
Schito, L., Rey, S., Xu, P., Man, S., Cruz-Munoz, W., & Kerbel, R. S. (2020). Metronomic chemotherapy offsets HIF alpha induction upon maximum-tolerated dose in metastatic cancers. EMBO MOLECULAR MEDICINE, 12(9), 12 pages. doi:10.15252/emmm.201911416
Schito, L., Rey, S., Xu, P., Man, S., Cruz-Muñoz, W., & Kerbel, R. S. (2020). Metronomic chemotherapy offsets HIFa induction upon maximum-tolerated dose in metastatic cancers. EMBO Molecular Medicine, 12(9). doi:10.15252/emmm.201911416
Dr Emmanuel Reynaud
de Niz, M., Kehrer, J., Brancucci, N. M. B., Moalli, F., Reynaud, E. G., Stein, J. V., & Frischknecht, F. (2020). 3D imaging of undissected optically cleared Anopheles stephensi mosquitoes and midguts infected with Plasmodium parasites. PLoS ONE, 15(9 September). doi:10.1371/journal.pone.0238134
Torres-Leguizamon, M., Reynaud, E., Nefau, T., & Duplessy-Garson, C. (2020). La reduction des risques a distance, un programme adapte et efficace pour faire face a la pandemie de COVID-19. Psychotropes (Paris, France), 26, 123-137.
Monks, P., Wychowaniec, J. K., McKiernan, E., Clerkin, S., Crean, J., Rodriguez, B. J., et al. (2021). Spatiotemporally Resolved Heat Dissipation in 3D Patterned Magnetically Responsive Hydrogels. Small, 17(5). doi:10.1002/smll.202004452
Merces, G. O. T., Kennedy, C., Lenoci, B., Reynaud, E. G., Burke, N., & Pickering, M. (2021). The incubot: A 3D printer-based microscope for long-term live cell imaging within a tissue culture incubator. HardwareX, 9. doi:10.1016/j.ohx.2021.e00189

Dr Clare Reynolds
Plows, J. F., Vickers, M. H., Ganapathy, T. P., Bridge-Comer, P. E., Stanley, J. L., & Reynolds, C. M. (2021). Interleukin-1 Receptor-1 Deficiency Impairs Metabolic Function in Pregnant and Non-Pregnant Female Mice. Molecular Nutrition and Food Research, 65(1). doi:10.1002/mnfr.201900770
Mangwiro, Y. T., Cuffe, J. S., Vickers, M. H., Reynolds, C. M., Mahizir, D., Anevska, K., et al. (2021). Maternal exercise alters rat fetoplacental stress response: Minimal effects of maternal growth restriction and high-fat feeding. Placenta, 104, 57-70. doi:10.1016/j.placenta.2020.11.006
Galante, L., Reynolds, C. M., Milan, A. M., Alexander, T., Bloomfield, F. H., Cameron-Smith, D., et al. (2021). Preterm human milk: associations between perinatal factors and hormone concentrations throughout lactation. Pediatric Research, 89(6), 1461-1469. doi:10.1038/s41390-020-1069-1
Galante, L., Reynolds, C. M., Milan, A. M., Alexander, T., Bloomfield, F. H., Jiang, Y., et al. (2021). Metabolic Hormone Profiles in Breast Milk From Mothers of Moderate-Late Preterm Infants Are Associated With Growth From Birth to 4 Months in a Sex-Specific Manner. Frontiers in Nutrition, 8. doi:10.3389/fnut.2021.641227
Professor Helen Roche
Lenighan, Y. M., Nugent, A. P., Moloney, A. P., Monahan, F. J., Walton, J., Flynn, A., et al. (2020). A modelling approach to investigate the impact of consumption of three different beef compositions on human dietary fat intakes. Public Health Nutrition, 23(13), 2373-2383. doi:10.1017/S1368980019003471
Hillesheim, E., Ryan, M. F., Gibney, E., Roche, H. M., & Brennan, L. (2020). Optimisation of a metabotype approach to deliver targeted dietary advice. Nutrition and Metabolism, 17(1). doi:10.1186/s12986-020-00499-z
Charles-Messance, H., Mitchelson, K. A. J., De Marco Castro, E., Sheedy, F. J., & Roche, H. M. (2020). Regulating metabolic inflammation by nutritional modulation. Journal of Allergy and Clinical Immunology, 146(4), 706-720. doi:10.1016/j.jaci.2020.08.013
Lorenc, A., Hamilton-Shield, J., Perry, R., Stevens, M., Wootton, S., Feelisch, M., et al. (2020). Body composition after allogeneic haematopoietic cell transplantation/total body irradiation in children and young people: a restricted systematic review. Journal of Cancer Survivorship, 14(5), 624-642. doi:10.1007/s11764-020-00871-1
Lynch, G. M., Murphy, C. H., Castro, E. D. M., & Roche, H. M. (2020). Inflammation and metabolism: The role of adiposity in sarcopenic obesity. Proceedings of the Nutrition Society, 79(4), 435-447. doi:10.1017/S0029665120007119
Ralston, J. C., Mitchelson, K. A. J., Lynch, G. M., Tran, T. T. T., Wang, H., Strain, C. R., et al. (2021). Microbiome Transfer Partly Overrides Lack of IL-1RI Signaling to Alter Hepatic but not Adipose Tissue Phenotype and Lipid Handling following a High-Fat Diet Challenge. Molecular Nutrition and Food Research, 65(1). doi:10.1002/mnfr.202000202
De Marco Castro, E., Calder, P. C., & Roche, H. M. (2021). ß-1,3/1,6-Glucans and Immunity: State of the Art and Future Directions. Molecular Nutrition and Food Research, 65(1). doi:10.1002/mnfr.201901071
Roche, H. M. (2021). Metabolism and Inflammation: New Synergies and Insights. Molecular Nutrition and Food Research, 65(1). doi:10.1002/mnfr.202000994
De Marco Castro, E., Calder, P. C., & Roche, H. M. (2021). Back Cover: ß-1,3/1,6-Glucans and Immunity: State of the Art and Future Directions. Molecular Nutrition & Food Research, 65(1), 2170003. doi:10.1002/mnfr.202170003
Burton-Pimentel, K. J., Pimentel, G., Hughes, M., Michielsen, C. C. J. R., Fatima, A., Vionnet, N., et al. (2021). Discriminating Dietary Responses by Combining Transcriptomics and Metabolomics Data in Nutrition Intervention Studies. Molecular Nutrition and Food Research, 65(4). doi:10.1002/mnfr.202000647
Ben-Harchache, S., Roche, H. M., Corish, C. A., & Horner, K. M. (2021). The Impact of Protein Supplementation on Appetite and Energy Intake in Healthy Older Adults: A Systematic Review with Meta-Analysis. Advances in Nutrition, 12(2), 490-502. doi:10.1093/advances/nmaa115
Blaak, E. E., Roche, H. M., & Afman, L. A. (2021). Editorial: Personalized Nutrition. Frontiers in Nutrition, 8. doi:10.3389/fnut.2021.669307
Gleeson, L. E., Roche, H. M., & Sheedy, F. J. (2021). Obesity, COVID-19 and innate immunometabolism. British Journal of Nutrition, 125(6), 628-632. doi:10.1017/S0007114520003529
Fitzpatrick, S. F., King, A. D., O’Donnell, C., Roche, H. M., & Ryan, S. (2021). Mechanisms of intermittent hypoxia-mediated macrophage activation – potential therapeutic targets for obstructive sleep apnoea. Journal of Sleep Research, 30(3). doi:10.1111/jsr.13202
Murphy, C. H., Flanagan, E. M., De Vito, G., Susta, D., Mitchelson, K. A. J., De Marco Castro, E., et al. (2021). Does supplementation with leucine-enriched protein alone and in combination with fish-oil-derived n-3 PUFA affect muscle mass, strength, physical performance, and muscle protein synthesis in well-nourished older adults? A randomized, double-blind, placebo-controlled trial. American Journal of Clinical Nutrition, 113(6), 1411-1427. doi:10.1093/ajcn/nqaa449
de la Hunty, A., Buttriss, J., Draper, J., Roche, H., Levey, G., Florescu, A., et al. (2021). UK Nutrition Research Partnership (NRP) workshop: Forum on advancing dietary intake assessment.. Nutrition bulletin, 46(2), 228-237. doi:10.1111/nbu.12501
de Marco Castro, E., Murphy, C. H., & Roche, H. M. (2021). Targeting the Gut Microbiota to Improve Dietary Protein Efficacy to Mitigate Sarcopenia. Frontiers in Nutrition, 8. doi:10.3389/fnut.2021.656730
Professor Brian Rodriguez
Mathew, P. T., Rodriguez, B. J., & Fang, F. (2020). Atomic and Close-to-Atomic Scale Manufacturing: A Review on Atomic Layer Removal Methods Using Atomic Force Microscopy. Nanomanufacturing and Metrology, 3(3), 167-186. doi:10.1007/s41871-020-00067-2
Kumari, P., Pillai, V. V. S., Rodriguez, B. J., Prencipe, M., & Benedetto, A. (2020). Sub-toxic concentrations of ionic liquids enhance cell migration by reducing the elasticity of the cellular lipid membrane. Journal of Physical Chemistry Letters, 11(17), 7327-7333. doi:10.1021/acs.jpclett.0c02149
Almohammed, S., Thampi, A., Bazaid, A., Zhang, F., Moreno, S., Keogh, K., et al. (2020). Energy harvesting with peptide nanotube-graphene oxide flexible substrates prepared with electric field and wettability assisted self-assembly. Journal of Applied Physics, 128(11). doi:10.1063/5.0017899
Kühne, I. A., Barker, A., Zhang, F., Stamenov, P., O'Doherty, O., Müller-Bunz, H., et al. (2020). Modulation of Jahn-Teller distortion and electromechanical response in a Mn<sup>3+</sup>spin crossover complex. Journal of Physics Condensed Matter, 32(40). doi:10.1088/1361-648X/ab82d1
Zhang, F., Rodriguez, B. J., Sawamura, S., & Paukshto, M. V. (2020). Fibril size-dependent control of polar ordering in type i collagen membranes. IEEE Transactions on Dielectrics and Electrical Insulation, 27(5), 1662-1667. doi:10.1109/TDEI.2020.008936
Almohammed, S., Fularz, A., Zhang, F., Alvarez-Ruiz, D., Bello, F., O'Regan, D. D., et al. (2020). Flexing Piezoelectric Diphenylalanine-Plasmonic Metal Nanocomposites to Increase SERS Signal Strength. ACS Applied Materials and Interfaces, 12(43), 48874-48881. doi:10.1021/acsami.0c15498
Flynn, S. P., Daniels, S., Rodriguez, B. J., & Kelleher, S. M. (2020). Replica molding of cicada wings: The role of water at point of synthesis on nanostructure feature size. Biointerphases, 15(6). doi:10.1116/6.0000637
Yao, Y., Naden, A. B., Zhang, F., Edwards, D., Joshi, P., Rodriguez, B. J., et al. (2020). Direct processing of PbZr<inf>0.53</inf>Ti<inf>0.47</inf>O<inf>3</inf> films on glass and polymeric substrates. Journal of the European Ceramic Society, 40(15), 5369-5375. doi:10.1016/j.jeurceramsoc.2020.07.052
Rosales, I., Salazar, L., Luna, D., Negrón, A., Bdikin, I., Rodriguez, B. J., & Heredia, A. (2021). Self-Assembly of Amyloid-Beta and Its Piezoelectric Properties. American Journal of Molecular Biology, 11(01), 1-14. doi:10.4236/ajmb.2021.111001
Monks, P., Wychowaniec, J. K., McKiernan, E., Clerkin, S., Crean, J., Rodriguez, B. J., et al. (2021). Spatiotemporally Resolved Heat Dissipation in 3D Patterned Magnetically Responsive Hydrogels. Small, 17(5). doi:10.1002/smll.202004452
Monks, P., Wychowaniec, J. K., McKiernan, E., Clerkin, S., Crean, J., Rodriguez, B. J., et al. (2021). Magnetic Hydrogels: Spatiotemporally Resolved Heat Dissipation in 3D Patterned Magnetically Responsive Hydrogels (Small 5/2021). Small, 17(5), 2170018. doi:10.1002/smll.202170018
Lomora, M., Larrañaga, A., Rodriguez-Emmenegger, C., Rodriguez, B., Dinu, I. A., Sarasua, J. R., & Pandit, A. (2021). An engineered coccolith-based hybrid that transforms light into swarming motion. Cell Reports Physical Science, 2(3). doi:10.1016/j.xcrp.2021.100373
McCormack, J. C., Podhorska, L., Delaney, C., Zhang, F., Rodriguez, B. J., & Kelleher, S. M. (2021). High Aspect Ratio Polymeric Nanoneedle Arrays. Macromolecular Materials and Engineering, 306(4). doi:10.1002/mame.202000754
Narayan, B., Herbert, C., Rodriguez, B. J., Brooks, B. R., & Buchete, N. V. (2021). Replica Exchange Molecular Dynamics of Diphenylalanine Amyloid Peptides in Electric Fields. Journal of Physical Chemistry B, 125(20), 5233-5242. doi:10.1021/acs.jpcb.1c01939
Zhang, F., Fan, H., Han, B., Zhu, Y., Deng, X., Edwards, D., et al. (2021). Boosting Polarization Switching-Induced Current Injection by Mechanical Force in Ferroelectric Thin Films. ACS Applied Materials and Interfaces, 13(22), 26180-26186. doi:10.1021/acsami.1c04912
Professor Silke Ryan
O'Donnell, C., Ryan, S., & McNicholas, W. T. (2020). The Impact of Telehealth on the Organization of the Health System and Integrated Care. Sleep Medicine Clinics, 15(3), 431-440. doi:10.1016/j.jsmc.2020.06.003
Marrone, O., Cibella, F., Roisman, G., Sliwinski, P., Joppa, P., Basoglu, O. K., et al. (2020). Effects of sleep apnea and kidney dysfunction on objective sleep quality in nondialyzed patients with chronic kidney disease: An ESADA study. Journal of Clinical Sleep Medicine, 16(9), 1475-1481. doi:10.5664/jcsm.8542
McCarthy, C., Savinelli, S., Feeney, E. R., Butler, M. W., O'Broin, C., Ryan, S., et al. (2020). Tocilizumab therapy in individuals with COVID-19 infection and hyperinflammatory state. Respirology, 25(10), 1090-1094. doi:10.1111/resp.13912
McCarthy, C., Savinelli, S., Feeney, E. R., Butler, M. W., O'Broin, C., Ryan, S., et al. (2020). Tocilizumab therapy in individuals with <scp>COVID</scp> -19 infection and hyperinflammatory state. Respirology, 25(10), 1090-1094. doi:10.1111/resp.13912
Gunduz, C., Basoglu, O. K., Kvamme, J. A., Verbraecken, J., Anttalainen, U., Marrone, O., et al. (2020). Long-term positive airway pressure therapy is associated with reduced total cholesterol levels in patients with obstructive sleep apnea: data from the European Sleep Apnea Database (ESADA). Sleep Medicine, 75, 201-209. doi:10.1016/j.sleep.2020.02.023
Bonsignore, M. R., Randerath, W., Schiza, S., Verbraecken, J., Elliott, M. W., Riha, R., et al. (2021). European Respiratory Society statement on sleep apnoea, sleepiness and driving risk. European Respiratory Journal, 57(2). doi:10.1183/13993003.01272-2020
Pengo, M. F., Faini, A., Grote, L., Ludka, O., Joppa, P., Pataka, A., et al. (2021). Impact of sleep apnea on cardioembolic risk in patients with atrial fibrillation data from the ESADA cohort. Stroke, 712-715. doi:10.1161/STROKEAHA.120.030285
Svedmyr, S., Hedner, J., Zou, D., Parati, G., Ryan, S., Hein, H., et al. (2021). Superior hypertension controlwith betablockade in the European Sleep Apnea Database. Journal of Hypertension, 39(2), 292-301. doi:10.1097/HJH.0000000000002629
Riha, R. L., Kotoulas, S. C., Pataka, A., Kvamme, J. A., Joppa, P., Hedner, J., et al. (2021). Obstructive sleep apnoea in adult patients post-tonsillectomy. Sleep Medicine, 78, 189-192. doi:10.1016/j.sleep.2020.11.024
Randerath, W. J., Herkenrath, S., Treml, M., Grote, L., Hedner, J., Bonsignore, M. R., et al. (2021). Evaluation of a multicomponent grading system for obstructive sleep apnoea: the Baveno classification. . ERJ open research, 7(1), 928-2020. doi:10.1183/23120541.00928-2020
Bailly, S., Grote, L., Hedner, J., Schiza, S., McNicholas, W. T., Basoglu, O. K., et al. (2021). Clusters of sleep apnoea phenotypes: A large pan-European study from the European Sleep Apnoea Database (ESADA). Respirology, 26(4), 378-387. doi:10.1111/resp.13969
Fitzpatrick, S. F., King, A. D., O’Donnell, C., Roche, H. M., & Ryan, S. (2021). Mechanisms of intermittent hypoxia-mediated macrophage activation – potential therapeutic targets for obstructive sleep apnoea. Journal of Sleep Research, 30(3). doi:10.1111/jsr.13202
O’Donnell, C., O’Mahony, A. M., McNicholas, W. T., & Ryan, S. (2021). Cardiovascular manifestations in obstructive sleep apnea: Current evidence and potential mechanisms. Polish Archives of Internal Medicine, 131(6), 550-560. doi:10.20452/pamw.16041
Crinion, S. J., Kleinerova, J., Kent, B., Nolan, G., Taylor, C. T., Ryan, S., & McNicholas, W. T. (2021). Non-dipping nocturnal blood pressure correlates with obstructive sleep apnoea severity in normotensive subjects and may reverse with therapy. ERJ Open Research, 7(3). doi:10.1183/23120541.00338-2021
Dr Luana Schito
Schito, L., & Rey, S. (2020). Hypoxia: Turning vessels into vassals of cancer immunotolerance. Cancer Letters, 487, 74-84. doi:10.1016/j.canlet.2020.05.015
Schito, L., Rey, S., Xu, P., Man, S., Cruz-Muñoz, W., & Kerbel, R. S. (2020). Metronomic chemotherapy offsets HIFa induction upon maximum-tolerated dose in metastatic cancers. EMBO Molecular Medicine, 12(9). doi:10.15252/emmm.201911416
Professor Denis Shields
McGauran, G., Dorris, E., Borza, R., Morgan, N., Shields, D. C., Matallanas, D., et al. (2020). Resolving the Interactome of the Human Macrophage Immunometabolism Regulator (MACIR) with Enhanced Membrane Protein Preparation and Affinity Proteomics. Proteomics, 20(19-20). doi:10.1002/pmic.202000062
Seoighe, C., Bracken, A. P., Buckley, P., Doran, P., Green, R., Healy, S., et al. (2020). The future of genomics in Ireland - focus on genomics for health.. HRB open research, 3, 89. doi:10.12688/hrbopenres.13187.1
Mészáros, B., Sámano-Sánchez, H., Alvarado-Valverde, J., Calyševa, J., Martínez-Pérez, E., Alves, R., et al. (2021). Short linear motif candidates in the cell entry system used by SARS-CoV-2 and their potential therapeutic implications. Science Signaling, 14(665). doi:10.1126/SCISIGNAL.ABD0334
Um, J., Manguy, J., Anes, J., Jacquier, J. C., Hurley, D., Dillon, E. T., et al. (2021). Enriching antimicrobial peptides from milk hydrolysates using pectin/alginate food-gels. Food Chemistry, 352. doi:10.1016/j.foodchem.2021.129220
Professor Jeremy Simpson
Hifni, B., Khan, M., Devereux, S. J., Byrne, M. H., Quinn, S. J., & Simpson, J. C. (2020). Investigation of the Cellular Destination of Fluorescently Labeled Carbon Nanohorns in Cultured Cells. ACS Applied Bio Materials, 3(10), 6790-6801. doi:10.1021/acsabm.0c00748
Yaothak, J., Simpson, J., Heffernan, L., Tsai, Y. -S., & Lin, C. -C. (2020). A Semi-Automated 2D Segmentation and Classification System to Quantify and Characterize Morphological Features of Golgi-Derived Membrane Structures. American Journal of Biomedical Engineering, 10(2), 29-43. doi:10.5923/j.ajbe.20201002.02
Charoux, C. M. G., Patange, A. D., Hinds, L. M., Simpson, J. C., O’Donnell, C. P., & Tiwari, B. K. (2020). Antimicrobial effects of airborne acoustic ultrasound and plasma activated water from cold and thermal plasma systems on biofilms. Scientific Reports, 10(1). doi:10.1038/s41598-020-74504-z
Mysior, M. M., & Simpson, J. C. (2021). Emerging roles for Rho GTPases operating at the Golgi complex. Small GTPases, 12(5-6), 311-322. doi:10.1080/21541248.2020.1812873
Assoc Professor Albert Smolenski
Comer, S., Nagy, Z., Bolado, A., von Kriegsheim, A., Gambaryan, S., Walter, U., et al. (2020). The RhoA regulators Myo9b and GEF-H1 are targets of cyclic nucleotide-dependent kinases in platelets. Journal of Thrombosis and Haemostasis, 18(11), 3002-3012. doi:10.1111/jth.15028
Comer, S. P., Cullivan, S., Szklanna, P. B., Weiss, L., Cullen, S., Kelliher, S., et al. (2021). COVID-19 induces a hyperactive phenotype in circulating platelets. PLoS Biology, 19(2). doi:10.1371/JOURNAL.PBIO.3001109
Goh, C. Y., Patmore, S., Smolenski, A., Howard, J., Evans, S., O'Sullivan, J., & McCann, A. (2021). The role of von Willebrand factor in breast cancer metastasis. Translational Oncology, 14(4). doi:10.1016/j.tranon.2021.101033
Professor Cormac Taylor
Criscuoli, M., Ulivieri, C., Filippi, I., Monaci, S., Guerrini, G., Crifò, B., et al. (2020). The Shc protein Rai enhances T-cell survival under hypoxia. Journal of Cellular Physiology, 235(11), 8058-8070. doi:10.1002/jcp.29461
Kierans, S. J., & Taylor, C. T. (2021). Regulation of glycolysis by the hypoxia-inducible factor (HIF): implications for cellular physiology. Journal of Physiology, 599(1), 23-37. doi:10.1113/JP280572
Smith-Cortinez, N., Fagundes, R. R., Gomez, V., Kong, D., de Waart, D. R., Heegsma, J., et al. (2021). Collagen release by human hepatic stellate cells requires vitamin C and is efficiently blocked by hydroxylase inhibition. FASEB Journal, 35(2). doi:10.1096/fj.202001564RR
Adeeb, F., Dorris, E. R., Morgan, N. E., Lawless, D., Maqsood, A., Ng, W. L., et al. (2021). A Novel RELA Truncating Mutation in a Familial Behçet’s Disease–like Mucocutaneous Ulcerative Condition. Arthritis and Rheumatology, 73(3), 490-497. doi:10.1002/art.41531
Strowitzki, M. J., Kimmer, G., Wehrmann, J., Ritter, A. S., Radhakrishnan, P., Opitz, V. M., et al. (2021). Inhibition of HIF-prolyl hydroxylases improves healing of intestinal anastomoses. JCI Insight, 6(8). doi:10.1172/jci.insight.139191
Crinion, S. J., Kleinerova, J., Kent, B., Nolan, G., Taylor, C. T., Ryan, S., & McNicholas, W. T. (2021). Non-dipping nocturnal blood pressure correlates with obstructive sleep apnoea severity in normotensive subjects and may reverse with therapy. ERJ Open Research, 7(3). doi:10.1183/23120541.00338-2021
Professor Emma Teeling
Damas, J., Hughes, G. M., Keough, K. C., Painter, C. A., Persky, N. S., Corbo, M., et al. (2020). Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates. Proceedings of the National Academy of Sciences of the United States of America, 117(36), 22311-22322. doi:10.1073/pnas.2010146117
Genereux, D. P., Serres, A., Armstrong, J., Johnson, J., Marinescu, V. D., Murén, E., et al. (2020). A comparative genomics multitool for scientific discovery and conservation. Nature, 587(7833), 240-245. doi:10.1038/s41586-020-2876-6
Gordon, D. E., Hiatt, J., Bouhaddou, M., Rezelj, V. V., Ulferts, S., Braberg, H., et al. (2020). Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. . Science (New York, N.Y.), 370(6521), eabe9403. doi:10.1126/science.abe9403
Power, M. L., Foley, N. M., Jones, G., & Teeling, E. C. (2021). Taking flight: An ecological, evolutionary and genomic perspective on bat telomeres. Molecular Ecology. doi:10.1111/mec.16117
Huang, Z., & Teeling, E. C. (2022). Bat genomes: unveiling the secrets of their superpowers. TheScienceBreaker, 07(02). doi:10.25250/thescbr.brk556
Kacprzyk, J., Locatelli, A. G., Hughes, G. M., Huang, Z., Clarke, M., Gorbunova, V., et al. (2021). Evolution of mammalian longevity: age-related increase in autophagy in bats compared to other mammals. Aging, 13(6), 7998-8025. doi:10.18632/aging.202852
Power, M. L., Power, S., Bertelsen, M. F., Jones, G., & Teeling, E. C. (2021). Wing: A suitable nonlethal tissue type for repeatable and rapid telomere length estimates in bats. Molecular Ecology Resources, 21(2), 421-432. doi:10.1111/1755-0998.13276
Rhie, A., McCarthy, S. A., Fedrigo, O., Damas, J., Formenti, G., Koren, S., et al. (2021). Towards complete and error-free genome assemblies of all vertebrate species. Nature, 592(7856), 737-746. doi:10.1038/s41586-021-03451-0
Wang, L. F., Gamage, A. M., Chan, W. O. Y., Hiller, M., & Teeling, E. C. (2021). Decoding bat immunity: the need for a coordinated research approach. Nature Reviews Immunology, 21(5), 269-271. doi:10.1038/s41577-021-00523-0
Vine, C., Teeling, E. C., Smith, M., Corton, C., Oliver, K., Skelton, J., et al. (2022). The genome sequence of the common pipistrelle, Pipistrellus pipistrellus Schreber 1774. Wellcome Open Research, 6, 117. doi:10.12688/wellcomeopenres.16895.1
Rocha, R., Aziz, S. A., Brook, C. E., Carvalho, W. D., Cooper-Bohannon, R., Frick, W. F., et al. (2021). Bat conservation and zoonotic disease risk: a research agenda to prevent misguided persecution in the aftermath of COVID-19. Animal Conservation, 24(3), 303-307. doi:10.1111/acv.12636
Dr Stephen Thorpe
Lachowski, D., Cortes, E., Matellan, C., Rice, A., Lee, D. A., Thorpe, S. D., & del Río Hernández, A. E. (2020). G Protein-Coupled Estrogen Receptor Regulates Actin Cytoskeleton Dynamics to Impair Cell Polarization. Frontiers in Cell and Developmental Biology, 8. doi:10.3389/fcell.2020.592628
Thompson, C. L., Fu, S., Knight, M. M., & Thorpe, S. D. (2020). Mechanical Stimulation: A Crucial Element of Organ-on-Chip Models. Frontiers in Bioengineering and Biotechnology, 8. doi:10.3389/fbioe.2020.602646
Thompson, C. L., Fu, S., Heywood, H. K., Knight, M. M., & Thorpe, S. D. (2021). Corrigendum: Mechanical Stimulation: A Crucial Element of Organ-on-Chip Models (Front. Bioeng. Biotechnol., (2020), 8, 602646, 10.3389/fbioe.2020.602646). Frontiers in Bioengineering and Biotechnology, 9. doi:10.3389/fbioe.2021.658873
Maccurtain, B. M., Quirke, N. P., Thorpe, S. D., & Gallagher, T. K. (2021). Pancreatic ductal adenocarcinoma: Relating biomechanics and prognosis. Journal of Clinical Medicine, 10(12). doi:10.3390/jcm10122711
Professor Desmond Tobin
Sikkink, S. K., Mine, S., Freis, O., Danoux, L., & Tobin, D. J. (2020). Stress-sensing in the human greying hair follicle: Ataxia Telangiectasia Mutated (ATM) depletion in hair bulb melanocytes in canities-prone scalp. Scientific Reports, 10(1). doi:10.1038/s41598-020-75334-9
Fagan, N., Meah, N., York, K., Bokhari, L., Fletcher, G., Chen, G., et al. (2021). Shedding light on therapeutics in alopecia and their relevance to COVID-19. Clinics in Dermatology, 39(1), 76-83. doi:10.1016/j.clindermatol.2020.12.015
Sundaramurthi, H., García-Mulero, S., Slater, K., Marcone, S., Piulats, J., Watson, W., et al. (2021). Inhibition of Metastatic Uveal Melanoma Cell Proliferation by the Histone Deacetylase 6 Inhibitor, Ricolinostat, is Linked to Altered Microphthalmia-associated Transcription Factor and Phospho-ERK Expression. doi:10.1101/2021.10.28.466226
O'Sullivan, J. D. B., Nicu, C., Picard, M., Chéret, J., Bedogni, B., Tobin, D. J., & Paus, R. (2021). The biology of human hair greying. Biological Reviews, 96(1), 107-128. doi:10.1111/brv.12648
Castellano-Pellicena, I., Morrison, C. G., Bell, M., O’connor, C., & Tobin, D. J. (2021). Melanin distribution in human skin: Influence of cytoskeletal, polarity, and centrosome-related machinery of stratum basale keratinocytes. International Journal of Molecular Sciences, 22(6), 1-19. doi:10.3390/ijms22063143
Wall, D., Meah, N., York, K., Bhoyrul, B., Bokhari, L., Abraham, L. S., et al. (2021). A Global eDelphi Exercise to Identify Core Domains and Domain Items for the Development of a Global Registry of Alopecia Areata Disease Severity and Treatment Safety (GRASS). JAMA Dermatology, 157(4), 439-448. doi:10.1001/jamadermatol.2020.5839
Tobin, D. J. (2021). Unpicking the Gordian knot of identifying metastasis development-relevant proteins in cutaneous squamous cell carcinoma. British Journal of Dermatology, 184(4), 593. doi:10.1111/bjd.19697
Tobin, D. J. (2021). How to design robust assays for human skin pigmentation: A “Tortoise and Hare challenge”. Experimental Dermatology, 30(5), 624-627. doi:10.1111/exd.14350
Wall, D., Alhusayen, R., Arents, B., Apfelbacher, C., Balogh, E. A., Bokhari, L., et al. (2021). Learning from disease registries during a pandemic: Moving toward an international federation of patient registries. Clinics in Dermatology, 39(3), 467-478. doi:10.1016/j.clindermatol.2021.01.018
Rosenberg, A. M., Rausser, S., Ren, J., Mosharov, E. V., Sturm, G., Ogden, R. T., et al. (2021). Quantitative mapping of human hair greying and reversal in relation to life stress. eLife, 10. doi:10.7554/eLife.67437
Professor Douglas Veale
Petrasca, A., Phelan, J. J., Ansboro, S., Veale, D. J., Fearon, U., & Fletcher, J. M. (2020). Targeting bioenergetics prevents CD4 T cell-mediated activation of synovial fibroblasts in rheumatoid arthritis. Rheumatology (United Kingdom), 59(10), 2816-2828. doi:10.1093/rheumatology/kez682
Murray, K. E., Turk, M. A., & Veale, D. J. (2020). Comment on: Cytopenias among patients with rheumatic diseases using methotrexate: A meta-analysis of randomized controlled clinical trials. Rheumatology (United Kingdom), 59(10), E74-E75. doi:10.1093/rheumatology/keaa286
Canavan, M., Marzaioli, V., McGarry, T., Bhargava, V., Nagpal, S., Veale, D. J., & Fearon, U. (2020). Rheumatoid arthritis synovial microenvironment induces metabolic and functional adaptations in dendritic cells. Clinical and Experimental Immunology, 202(2), 226-238. doi:10.1111/cei.13479
Floudas, A., Neto, N., Marzaioli, V., Murray, K., Moran, B., Monaghan, M. G., et al. (2020). Pathogenic, glycolytic PD-1<sup>+</sup> B cells accumulate in the hypoxic RA joint. JCI Insight, 5(21). doi:10.1172/jci.insight.139032
Wade, S. M., McGarry, T., Wade, S. C., Fearon, U., & Veale, D. J. (2020). Serum microrna signature as a diagnostic and therapeutic marker in patients with psoriatic arthritis. Journal of Rheumatology, 47(12), 1760-1767. doi:10.3899/jrheum.190602
Najm, A., Masson, F. M., Preuss, P., Georges, S., Ory, B., Quillard, T., et al. (2020). MicroRNA-17-5p Reduces Inflammation and Bone Erosions in Mice With Collagen-Induced Arthritis and Directly Targets the JAK/STAT Pathway in Rheumatoid Arthritis Fibroblast-like Synoviocytes. Arthritis and Rheumatology, 72(12), 2030-2039. doi:10.1002/art.41441
Marzaioli, V., Canavan, M., Donnolly, A., Wade, S., Fraser, A., O'Sullivan, T., et al. (2021). Knowledge of disease, diagnosis, adherence and impact of research in an Irish cohort of patients with inflammatory arthritis. doi:10.12688/hrbopenres.13274.1
McGarry, T., Hanlon, M. M., Marzaioli, V., Cunningham, C. C., Krishna, V., Murray, K., et al. (2021). Rheumatoid arthritis CD14<sup>+</sup> monocytes display metabolic and inflammatory dysfunction, a phenotype that precedes clinical manifestation of disease. Clinical and Translational Immunology, 10(1). doi:10.1002/cti2.1237
Murray, K., Quinn, S., Turk, M., O'rourke, A., Molloy, E., O'neill, L., et al. (2021). COVID-19 and rheumatic musculoskeletal disease patients: Infection rates, attitudes and medication adherence in an Irish population. Rheumatology (United Kingdom), 60(2), 902-906. doi:10.1093/rheumatology/keaa694
Murray, K., Floudas, A., Murray, C., Fabre, A., Crown, J., Fearon, U., & Veale, D. (2021). First use of tofacitinib to treat an immune checkpoint inhibitor-induced arthritis. BMJ Case Reports, 14(2). doi:10.1136/bcr-2020-238851
Orr, C. K., Vieira-Sousa, E., Fonseca, J. E., & Veale, D. (2021). Arthroscopic Guided Synovial Biopsies. Frontiers in Medicine, 7. doi:10.3389/fmed.2020.604582
Floudas, A., Canavan, M., McGarry, T., Mullan, R., Nagpal, S., Veale, D. J., & Fearon, U. (2021). Acpa status correlates with differential immune profile in patients with rheumatoid arthritis. Cells, 10(3), 1-15. doi:10.3390/cells10030647
Cunningham, C. C., Wade, S., Floudas, A., Orr, C., McGarry, T., Wade, S., et al. (2021). Serum miRNA Signature in Rheumatoid Arthritis and “At-Risk Individuals”. Frontiers in Immunology, 12. doi:10.3389/fimmu.2021.633201
Turk, M., Murray, K., Alammari, Y., Gorman, A., Young, F., Gallagher, P., et al. (2021). The effects of alcohol consumption and its associations with disease activity among 979 patients with inflammatory arthritis. RMD Open, 7(2). doi:10.1136/rmdopen-2020-001510
Marzaioli, V., Floudas, A., Canavan, M., Wade, S., Murray, K., Mullan, R., et al. (2021). OP0025 CD209+/CD14+ DENDRITIC CELLS ARE ENRICHED AND ACTIVATED AT THE SITE OF INFLAMMATION AND ARE MODULATED BY JAK/STAT SIGNALLING. Annals of the Rheumatic Diseases, 80(Suppl 1), 14.1-14. doi:10.1136/annrheumdis-2021-eular.2122
Quinn, S., Maguire, S., O’shea, F. B., O’neill, L., Molloy, E., Fearon, U., et al. (2021). POS0964 CHARACTERISTICS AND BURDEN OF DISEASE IN PATIENTS WITH RADIOGRAPHIC VERSUS NON-RADIOGRAPHIC AXIAL SPONDYLOARTHRITIS IN THE ANKYLOSING SPONDYLITIS REGISTRY OF IRELAND COHORT. Annals of the Rheumatic Diseases, 80(Suppl 1), 747.1-747. doi:10.1136/annrheumdis-2021-eular.1056
Canavan, M., Marzaioli, V., Bhargava, V., Nagpal, S., Gallagher, P., Hurson, C., et al. (2021). AB0018 ACCUMULATION OF FUNCTIONALLY MATURE CD1C+ DENDRITIC CELLS CONTRIBUTES TO SYNOVIAL INFLAMMATION IN INFLAMMATORY ARTHRITIS. Annals of the Rheumatic Diseases, 80(Suppl 1), 1043.2-1043. doi:10.1136/annrheumdis-2021-eular.1584
Floudas, A., Canavan, M., McGarry, T., Krishna, V., Nagpal, S., Veale, D., & Fearon, U. (2021). POS0387 ACPA STATUS CORRELATES WITH DIFFERENTIAL IMMUNE PROFILE OF RHEUMATOID ARTHRITIS PATIENTS. Annals of the Rheumatic Diseases, 80(Suppl 1), 423.2-424. doi:10.1136/annrheumdis-2021-eular.1885
Canavan, M., Marzaioli, V., Donnelly, A., Wade, S., Fraser, A., O’sullivan, T., et al. (2021). AB0916-PARE KNOWLEDGE OF DISEASE, DIAGNOSIS, ADHERENCE AND IMPACT OF RESEARCH IN PATIENTS WITH INFLAMMATORY ARTHRITIS. Annals of the Rheumatic Diseases, 80(Suppl 1), 1479.2-1480. doi:10.1136/annrheumdis-2021-eular.2085
Hanlon, M., Canavan, M., Song, Q., Neto, N., Gallagher, P., Mullan, R., et al. (2021). OP0028 CD206+CD163+ PATHOGENIC MACROPHAGES ENRICHED IN RHEUMATOID ARTHRITIS SYNOVIAL TISSUE WITH DISTINCT TRANSCRIPTIONAL SIGNATURES. Annals of the Rheumatic Diseases, 80(Suppl 1), 15.1-15. doi:10.1136/annrheumdis-2021-eular.1431
Foo, S., Floudas, A., Wade, S., O’ Brien, A., Ansboro, S., Mullan, R., et al. (2021). POS0069 INCREASED T CELL RESPONSES, METABOLIC ACTIVITY AND FIBROBLAST INVASIVE CAPACITY IN CHILDREN WITH DOWN’S SYNDROME-ASSOCIATED ARTHRITIS COMPARED TO JUVENILE IDIOPATHIC ARTHRITIS. Annals of the Rheumatic Diseases, 80(Suppl 1), 241.1-241. doi:10.1136/annrheumdis-2021-eular.2104
Floudas, A., Neto, N., Canavan, M., Mcgarry, T., Krishna, V., Nagpal, S., et al. (2021). POS0007 LOSS OF BALANCE BETWEEN PROTECTIVE AND PRO-INFLAMMATORY SYNOVIAL TISSUE T CELL POLYFUNCTIONALITY PREDATES CLINICAL ONSET OF RHEUMATOID ARTHRITIS. Annals of the Rheumatic Diseases, 80(Suppl 1), 205-206. doi:10.1136/annrheumdis-2021-eular.2220
O’ Brien, A., Hanlon, M., Marzaioli, V., Flynn, K., Wade, S., Veale, D., & Fearon, U. (2021). POS0411 TARGETING JAK-STAT SIGNALLING ALTERS THE PHENOTYPIC CHARACTERISTICS OF PsA SYNOVIAL FIBROBLASTS IN RESPONSE TO THE JAK/STAT ACTIVATOR ONCOSTATIN M. Annals of the Rheumatic Diseases, 80(Suppl 1), 435.1-435. doi:10.1136/annrheumdis-2021-eular.2528
Murray, K., Turk, M., Alammari, Y., Young, F., Gallagher, P., Saber, T. P., et al. (2021). POS0625 ASSOCIATIONS OF REMISSION AND PERSISTENCE OF BIOLOGICS AT 1 AND 12 YEARS. Annals of the Rheumatic Diseases, 80(Suppl 1), 551.1-551. doi:10.1136/annrheumdis-2021-eular.2547
Murray, K., Quinn, S., Turk, M., O’rourke, A., Molloy, E., O’neill, L., et al. (2021). POS1216 SYMPTOM RATES, ATTITUDES AND MEDICATION ADHERENCE OF RHEUMATIC AND MUSCULOSKELETAL DISEASE PATIENTS DURING THE SARS-CoV2 PANDEMIC. Annals of the Rheumatic Diseases, 80(Suppl 1), 891.2-892. doi:10.1136/annrheumdis-2021-eular.2579
Turk, M., Gorman, A., Murray, K., Alammari, Y., Young, F., Turk, J., et al. (2021). POS0462 ALCOHOL AND INFLAMMATORY ARTHRITIS DISEASE ACTIVITY: PERSPECTIVES FROM A 979-PATIENT COHORT WITH SYSTEMATIC REVIEW AND META-ANALYSIS. Annals of the Rheumatic Diseases, 80(Suppl 1), 462.2-463. doi:10.1136/annrheumdis-2021-eular.2099
O’Brien, A., Hanlon, M. M., Marzaioli, V., Wade, S. C., Flynn, K., Fearon, U., & Veale, D. J. (2021). Targeting JAK-STAT Signalling Alters PsA Synovial Fibroblast Pro-Inflammatory and Metabolic Function. Frontiers in Immunology, 12. doi:10.3389/fimmu.2021.672461
Rooney, L., Veale, D. J., Orr, C., & McCarthy, C. (2021). Targeting GM-CSF in rheumatological conditions: risk of PAP. The Lancet Rheumatology, 3(7), e473. doi:10.1016/S2665-9913(21)00145-4

Dr Martina Wallace
Muthusamy, T., Cordes, T., Handzlik, M. K., You, L., Lim, E. W., Gengatharan, J., et al. (2020). Serine restriction alters sphingolipid diversity to constrain tumour growth. Nature, 586(7831), 790-795. doi:10.1038/s41586-020-2609-x
Wallace, M., & Metallo, C. M. (2020). Tracing insights into de novo lipogenesis in liver and adipose tissues. Seminars in Cell and Developmental Biology, 108, 65-71. doi:10.1016/j.semcdb.2020.02.012
Lee, Y. M., Mu, A., Wallace, M., Gengatharan, J. M., Furst, A. J., Bode, L., et al. (2021). Microbiota control of maternal behavior regulates early postnatal growth of offspring. Science Advances, 7(5). doi:10.1126/SCIADV.ABE6563
Eade, K., Gantner, M. L., Hostyk, J. A., Nagasaki, T., Giles, S., Fallon, R., et al. (2021). Serine biosynthesis defect due to haploinsufficiency of PHGDH causes retinal disease. Nature Metabolism, 3(3), 366-377. doi:10.1038/s42255-021-00361-3
Sawh, M. C., Wallace, M., Shapiro, E., Goyal, N. P., Newton, K. P., Yu, E. L., et al. (2021). Dairy Fat Intake, Plasma Pentadecanoic Acid, and Plasma Iso-heptadecanoic Acid Are Inversely Associated With Liver Fat in Children. Journal of pediatric gastroenterology and nutrition, 72(4), e90-e96. doi:10.1097/MPG.0000000000003040
Professor Wenxin Wang
Sigen, A., Lyu, J., Johnson, M., Creagh-Flynn, J., Zhou, D., Lara-Sáez, I., et al. (2020). Instant Gelation System as Self-Healable and Printable 3D Cell Culture Bioink Based on Dynamic Covalent Chemistry. ACS Applied Materials and Interfaces, 12(35), 38918-38924. doi:10.1021/acsami.0c08567
Orlando, I., Basnett, P., Nigmatullin, R., Wang, W., Knowles, J. C., & Roy, I. (2020). Chemical Modification of Bacterial Cellulose for the Development of an Antibacterial Wound Dressing. Frontiers in Bioengineering and Biotechnology, 8. doi:10.3389/fbioe.2020.557885
Alghamdi, M., Chierchini, F., Eigel, D., Taplan, C., Miles, T., Pette, D., et al. (2020). Poly(ethylene glycol) based nanotubes for tuneable drug delivery to glioblastoma multiforme. Nanoscale Advances, 2(10), 4498-4509. doi:10.1039/d0na00471e
Liu, T., Li, X., Wang, T., Chen, X., Zhang, S., Liao, J., et al. (2020). Kartogenin mediates cartilage regeneration by stimulating the IL-6/Stat3-dependent proliferation of cartilage stem/progenitor cells. Biochemical and Biophysical Research Communications, 532(3), 385-392. doi:10.1016/j.bbrc.2020.08.059
He, Z., Charleton, C., Devine, R., Kelada, M., Walsh, J. M. D., Conway, G., et al. (2021). Synergistic Cytotoxicity Between Cold Atmospheric Plasma and Pyrazolopyrimidinones Against Glioblastoma Cells. doi:10.1101/2021.02.04.429831
Cai, Y., Johnson, M., Sigen, A., Xu, Q., Tai, H., & Wang, W. (2021). A Hybrid Injectable and Self-Healable Hydrogel System as 3D Cell Culture Scaffold. Macromolecular Bioscience. doi:10.1002/mabi.202100079
López-Cano, J. J., Sigen, A., Andrés-Guerrero, V., Tai, H., Bravo-Osuna, I., Molina-Martínez, I. T., et al. (2021). Thermo-responsive PLGA-PEG-PLGA hydrogels as novel injectable platforms for neuroprotective combined therapies in the treatment of retinal degenerative diseases. Pharmaceutics, 13(2), 1-23. doi:10.3390/pharmaceutics13020234
A, S., Xu, Q., Johnson, M., Creagh-Flynn, J., Venet, M., Zhou, D., et al. (2021). An injectable multi-responsive hydrogel as self-healable and on-demand dissolution tissue adhesive. Applied Materials Today, 22. doi:10.1016/j.apmt.2021.100967
Newland, B., Newland, H., Lorenzi, F., Eigel, D., Welzel, P. B., Fischer, D., et al. (2021). Injectable Glycosaminoglycan-Based Cryogels from Well-Defined Microscale Templates for Local Growth Factor Delivery. ACS Chemical Neuroscience, 12(7), 1178-1188. doi:10.1021/acschemneuro.1c00005
Li, X., Xu, Q., Johnson, M., Wang, X., Lyu, J., Li, Y., et al. (2021). A chondroitin sulfate based injectable hydrogel for delivery of stem cells in cartilage regeneration. Biomaterials Science, 9(11), 4139-4148. doi:10.1039/d1bm00482d
He, Z., Xu, Q., Newland, B., Foley, R., Lara-Sáez, I., Curtin, J. F., & Wang, W. (2021). Reactive oxygen species (ROS): Utilizing injectable antioxidative hydrogels and ROS-producing therapies to manage the double-edged sword. Journal of Materials Chemistry B, 9(32), 6326-6346. doi:10.1039/d1tb00728a
Professor Bill Watson
Drápela, S., Khirsariya, P., van Weerden, W. M., Fedr, R., Suchánková, T., Búzová, D., et al. (2020). The CHK1 inhibitor MU380 significantly increases the sensitivity of human docetaxel-resistant prostate cancer cells to gemcitabine through the induction of mitotic catastrophe.. Molecular oncology, 14(10), 2487-2503. doi:10.1002/1878-0261.12756
Sweetman, D. U., Kelly, L., Hurley, T., Onwuneme, C., Watson, R. W. G., Murphy, J. F. A., et al. (2020). Troponin T correlates with MRI results in neonatal encephalopathy. Acta Paediatrica, International Journal of Paediatrics, 109(11), 2266-2270. doi:10.1111/apa.15255
Gilgunn, S., Murphy, K., Stöckmann, H., Conroy, P. J., Brendan Murphy, T., William Watson, R., et al. (2020). Glycosylation in indolent, significant and aggressive prostate cancer by automated high-throughput n-glycan profiling. International Journal of Molecular Sciences, 21(23), 1-17. doi:10.3390/ijms21239233
Watson, R. W., Azam, H., Aura, C., Russell, N., McCormack, J., Corey, E., et al. (2020). Inhibition of serum response factor improves response to enzalutamide in prostate cancer. Cancers, 12(12), 1-13. doi:10.3390/cancers12123540
Sundaramurthi, H., García-Mulero, S., Slater, K., Marcone, S., Piulats, J., Watson, W., et al. (2021). Inhibition of Metastatic Uveal Melanoma Cell Proliferation by the Histone Deacetylase 6 Inhibitor, Ricolinostat, is Linked to Altered Microphthalmia-associated Transcription Factor and Phospho-ERK Expression. doi:10.1101/2021.10.28.466226
Brady, L., Carlsson, J., Baird, A. M., Casey, O., Vlajnic, T., Murchan, P., et al. (2021). Correlation of integrated ERG/PTEN assessment with biochemical recurrence in prostate cancer. Cancer Treatment and Research Communications, 29. doi:10.1016/j.ctarc.2021.100451
Jones, A. L., Dhanapala, L., Baldo, T. A., Sharafeldin, M., Krause, C. E., Shen, M., et al. (2021). Prostate Cancer Diagnosis in the Clinic Using an 8-Protein Biomarker Panel. Analytical Chemistry, 93(2), 1059-1067. doi:10.1021/acs.analchem.0c04034
Fitzgerald, J., Higgins, D., Mazo Vargas, C., Watson, W., Mooney, C., Rahman, A., et al. (2021). Future of biomarker evaluation in the realm of artificial intelligence algorithms: Application in improved therapeutic stratification of patients with breast and prostate cancer. Journal of Clinical Pathology, 74(7), 429-434. doi:10.1136/jclinpath-2020-207351
Doherty, T., McKeever, S., Al-Attar, N., Murphy, T., Aura, C., Rahman, A., et al. (2021). Feature fusion of Raman chemical imaging and digital histopathology using machine learning for prostate cancer detection. Analyst, 146(13), 4195-4211. doi:10.1039/d1an00075f
Moghaddam, S., Jalali, A., O’neill, A., Murphy, L., Gorman, L., Reilly, A. M., et al. (2021). Integrating serum biomarkers into prediction models for biochemical recurrence following radical prostatectomy. Cancers, 13(16). doi:10.3390/cancers13164162
Professor Gerry Wilson
Dagliati, A., Plant, D., Nair, N., Jani, M., Amico, B., Peek, N., et al. (2020). Latent Class Trajectory Modeling of 2-Component Disease Activity Score in 28 Joints Identifies Multiple Rheumatoid Arthritis Phenotypes of Response to Biologic Disease-Modifying Antirheumatic Drugs. Arthritis and Rheumatology, 72(10), 1632-1642. doi:10.1002/art.41379
McGauran, G., Dorris, E., Borza, R., Morgan, N., Shields, D. C., Matallanas, D., et al. (2020). Resolving the Interactome of the Human Macrophage Immunometabolism Regulator (MACIR) with Enhanced Membrane Protein Preparation and Affinity Proteomics. Proteomics, 20(19-20). doi:10.1002/pmic.202000062
Gilani, S. S. A., Nair, N., Plant, D., Hyrich, K., Morgan, A. W., Morris, A. P., et al. (2020). Pharmacogenetics of TNF inhibitor response in rheumatoid arthritis utilizing the two-component disease activity score. Pharmacogenomics, 21(16), 1151-1156. doi:10.2217/pgs-2020-0043
Donnelly, S., Manning, M., Mannan, H., Wilson, A. G., & Kroll, T. (2020). Renegotiating dimensions of the self: A systematic review and qualitative evidence synthesis of the lived experience of self-managing rheumatoid arthritis. Health Expectations, 23(6), 1388-1411. doi:10.1111/hex.13122
Adeeb, F., Dorris, E. R., Morgan, N. E., Lawless, D., Maqsood, A., Ng, W. L., et al. (2021). A Novel RELA Truncating Mutation in a Familial Behçet’s Disease–like Mucocutaneous Ulcerative Condition. Arthritis and Rheumatology, 73(3), 490-497. doi:10.1002/art.41531
Donnelly, S., Wilson, A. G., Mannan, H., Dix, C., Whitehill, L., & Kroll, T. (2021). (In)Visible illness: A photovoice study of the lived experience of self-managing rheumatoid arthritis. PLoS ONE, 16(3 March). doi:10.1371/journal.pone.0248151
Donnelly, S., Wilson, A. G., Mannan, H., Dix, C., Whitehill, L., & Kroll, T. (2021). Erratum: (In)Visible illness: A photovoice study of the lived experience of self-managing rheumatoid arthritis (PLoS ONE (2021) 16:3 (e0248151) DOI: 10.1371/journal.pone.0248151). PLoS ONE, 16(4 April). doi:10.1371/journal.pone.0250451
Nair, N., Barton, A., & Wilson, A. G. (2021). Cell-specific epigenetic drivers of pathogenesis in rheumatoid arthritis. Epigenomics, 13(7), 549-560. doi:10.2217/epi-2020-0380
Charles-Schoeman, C., Giles, J. T., Lane, N., Choy, E., Furst, D., Vencovský, J., et al. (2021). OP0128 INTEGRATED LABORATORY ABNORMALITY PROFILES OF UPADACITINIB WITH UP TO 4.5 YEARS OF EXPOSURE IN PATIENTS WITH RHEUMATOID ARTHRITIS TREATED IN THE SELECT PHASE 3 PROGRAM. Annals of the Rheumatic Diseases, 80(Suppl 1), 72-73. doi:10.1136/annrheumdis-2021-eular.1815
Professor Kenneth Wolfe
Venkatesh, A., Murray, A. L., Coughlan, A. Y., & Wolfe, K. H. (2021). Giant GAL gene clusters for the melibiose-galactose pathway in Torulaspora. Yeast, 38(1), 117-126. doi:10.1002/yea.3532
Nishant, K. T., Wloch-Salamon, D., Wolfe, K. H., & Nobile, C. J. (2021). Into the wild—Exploring the life cycles of yeasts. Yeast, 38(1), 3-4. doi:10.1002/yea.3547
Hanson, S. J., Cinnéide, E., Salzberg, L. I., Wolfe, K. H., McGowan, J., Fitzpatrick, D. A., & Matlin, K. (2021). Genomic diversity, chromosomal rearrangements, and interspecies hybridization in the Ogataea polymorpha species complex. G3: Genes, Genomes, Genetics, 11(8). doi:10.1093/g3journal/jkab211
Dr Yan Yan
Dawson, K. A., & Yan, Y. (2021). Current understanding of biological identity at the nanoscale and future prospects. Nature Nanotechnology, 16(3), 229-242. doi:10.1038/s41565-021-00860-0
Wang, Y. F., Zhang, C., Yang, K., Wang, Y., Shan, S., Yan, Y., et al. (2021). Transportation of AIE-visualized nanoliposomes is dominated by the protein corona. National Science Review, 8(6). doi:10.1093/nsr/nwab068
Dr Xiangming Zhu
Mc Carthy, C., & Zhu, X. (2020). Chemoselective activation of ethyl: Vs. phenyl thioglycosides: One-pot synthesis of oligosaccharides. Organic and Biomolecular Chemistry, 18(44), 9029-9034. doi:10.1039/d0ob01606c

Other

Professor Fionnuala McAuliffe
McAuliffe, F., Killeen, S. L., Byrne, D. F., O'Reilly, S. L., Geraghty, A. A., Yelverton, C. A., et al. (2021). Priorities for preconception health and obesity from the perspective of women: a mixed methods study. In Annals of Nutrition and Metabolism. Karger.
Mone, F., Mulcahy, C., Navaratnam, K., Phelan, M. M., Breathnach, F., Alfirevic, A., & McAuliffe Frcog, F. M. (2021). Assessing measures of aspirin adherence in pregnancy: Secondary analysis of the TEST randomized controlled trial.. In European journal of obstetrics, gynecology, and reproductive biology (Vol. 259, pp. 222-223). [Print-Electronic]. doi:10.1016/j.ejogrb.2020.11.058

Preprint

Dr Eoin Brennan
Sandholm, N., Cole, J. B., Nair, V., Sheng, X., Liu, H., Ahlqvist, E., et al. (2021). Genome-wide meta-analysis and omics integration identifies novel genes associated with diabetic kidney disease. doi:10.1101/2021.08.27.21262264
Professor Lorraine Brennan
Heffernan, M., Doherty, L. C., Mendes, R. H., Clarke, M., Hodge, S., Clements, M., et al. (2021). Effectiveness of a Fortified Drink in Improving B Vitamin Biomarkers in Older Adults: A Controlled Intervention Trial. doi:10.21203/rs.3.rs-757573/v1
Professor Geraldine Butler
Mancera, E., Nocedal, I., Hammel, S., Gulati, M., Mitchell, K. F., Andes, D. R., et al. (2020). Evolution of the complex transcription network controlling biofilm formation in <i>Candida</i> species. doi:10.1101/2020.11.08.373514
Dr Jeffrey Glennon
van As, D., Okkersen, K., Bassez, G., Schoser, B., Lochmüller, H., Glennon, J., et al. (2021). Clinical outcome evaluations and CBT response prediction in Myotonic Dystrophy. doi:10.1101/2021.02.25.21252140
Tsetsos, F., Topaloudi, A., Jain, P., Yang, Z., Yu, D., Kolovos, P., et al. (2021). Genome-wide Association Study identifies two novel loci for Gilles de la Tourette Syndrome. doi:10.1101/2021.12.11.21267560
Professor Catherine Godson
Sandholm, N., Cole, J. B., Nair, V., Sheng, X., Liu, H., Ahlqvist, E., et al. (2021). Genome-wide meta-analysis and omics integration identifies novel genes associated with diabetic kidney disease. doi:10.1101/2021.08.27.21262264
Professor Stephen Gordon
Remot, A., Carreras, F., Coupé, A., Doz-Deblauwe, É., Boschiroli, M. L., Browne, J., et al. (2021). Mycobacterial infection of precision cut lung slices reveals that the type 1 interferon pathway is locally induced by Mycobacterium bovis but not M. tuberculosis in different cattle breeds. doi:10.1101/2021.04.16.440039
Lundahl, M., Mitermite, M., Ryan, D., Case, S., Williams, N., Yang, M., et al. (2021). Macrophage Innate Training Induced by IL-4 and IL-13 Activation Enhances OXPHOS Driven Anti-Mycobacterial Responses. doi:10.1101/2021.10.12.463833
Professor Fionnuala McAuliffe
Glennon, K., Donnelly, J., Knowles, S., McAuliffe, F., Reilly, A. O., Corcoran, S., et al. (2020). Immunological assessment of SARS-CoV-2 Infection in Pregnancy From Diagnosis to Delivery: A multicentre prospective observational study. doi:10.22541/au.160554794.41545816/v1
Professor Emma Teeling
Lu, A. T., Fei, Z., Haghani, A., Robeck, T. R., Zoller, J. A., Li, C. Z., et al. (2021). Universal DNA methylation age across mammalian tissues. doi:10.1101/2021.01.18.426733
Li, C., Haghani, A., Robeck, T., Villar, D., Lu, A., Zhang, J., et al. (2021). Epigenetic predictors of maximum lifespan and other life history traits in mammals. doi:10.1101/2021.05.16.444078
Santillan, D. M., Lama, T., Guerrero, Y. G., Brown, A., Donat, P., Zhao, H., et al. (2021). LARGE-SCALE GENOME SAMPLING REVEALS UNIQUE IMMUNITY AND METABOLIC ADAPTATIONS IN BATS. doi:10.22541/au.160977727.76870866/v2
Santillan, D. M., Lama, T., Guerrero, Y. G., Brown, A., Donat, P., Zhao, H., et al. (2021). LARGE-SCALE GENOME SAMPLING REVEALS UNIQUE IMMUNITY AND METABOLIC ADAPTATIONS IN BATS. doi:10.22541/au.160977727.76870866/v1
Santillan, D. M., Lama, T., Guerrero, Y. G., Brown, A., Donat, P., Zhao, H., et al. (2021). LARGE-SCALE GENOME SAMPLING REVEALS UNIQUE IMMUNITY AND METABOLIC ADAPTATIONS IN BATS. doi:10.22541/au.160977727.76870866/v3
Professor Matthias Wilm
Li, Z., Liang, Y., wang, C., Zhang, G., Schlossmann, J., Baron, M., et al. (2020). AN IMPORTANT STIMULATORY ROLE FOR THE cGMP-DEPENDENT PROTEIN KINASE II IN PLATELET ACTIVATION, IN VIVO THROMBOSIS AND HAEMOSTASIS. doi:10.22541/au.160802063.39198387/v1
Professor Kenneth Wolfe
Venkatesh, A., Murray, A. L., Coughlan, A. Y., & Wolfe, K. H. (2020). Giant<i>GAL</i>gene clusters for the melibiose-galactose pathway in<i>Torulaspora</i>. doi:10.1101/2020.09.09.289694

Software / Code

Professor Brian Rodriguez
Rodriguez, B. (2021). Data and code used in the corresponding study: Maximizing Information: A Machine Learning Approach for Analysis of Complex Nanoscale Electromechanical Behavior [Computer Software]. Zenodo: Zenodo. doi:10.5281/zenodo.5172745

UCD Conway Institute

UCD Conway Institute - Research Publications 2021/2022

UCD Conway Institute

UCD Conway Institute - Research Publications 2021/2022

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