Conway Institute | UCD Research.

Book

Professor Prem Puri
Puri, P., & Höllwarth, M. E. (2023). Pediatric surgery: Diagnosis and management. doi:10.1007/978-3-030-81488-5

Chapter

Dr Gary Brennan
Quinlan, S., Henke, C., Brennan, G. P., Henshall, D. C., & Jimenez-Mateos, E. M. (2023). Detection of MicroRNAs in Brain Slices Using In Situ Hybridization. In Methods in Molecular Biology (Vol. 2595, pp. 93-100). doi:10.1007/978-1-0716-2823-2_6
Professor Andrew Green
O'Byrne, J. J., & Green, A. J. (2023). Genetics. In Pediatric Surgery: Diagnosis and Management (pp. 145-153). doi:10.1007/978-3-030-81488-5_12
Professor Patrick Guiry
Cunningham, L., Kumar, S. V., & Guiry, P. J. (2023). Functionalization of chromenes and their derivatives. In Transition-Metal-Catalyzed C-H Functionalization of Heterocycles (Vol. 2, pp. 435-484). doi:10.1002/9781119774167.ch10
Professor Ulla Knaus
Knaus, U. G., Shah, A. M., & Thannickal, V. J. (2023). Quo Vadis NADPH Oxidases: Perspectives on Clinical Translation. In NADPH Oxidases Revisited: From Function to Structure (pp. 575-586). doi:10.1007/978-3-031-23752-2_34
Dr Arun Kumar
Xu, X., Kilroy, D., Kumar, A., Iqbal, M. Z., Mangina, E., & Campbell, A. G. (2023). Mixed Reality Applications in Tertiary Veterinary Education: A Systematic Review. In Mixed Reality for Education (pp. 241-264). Springer Nature Singapore. doi:10.1007/978-981-99-4958-8_10
Professor Carel Le Roux
Alotaibi, M., & le Roux, C. W. (2023). Glycemic Control and Reduction of Cardiorenal Risk Following Bariatric Surgery. In Obesity, Bariatric and Metabolic Surgery: A Comprehensive Guide: Second Edition (pp. 987-995). doi:10.1007/978-3-030-60596-4_55
Neff, K. J., & le Roux, C. W. (2023). Mechanisms of Action of Different Bariatric Surgical Procedures. In Obesity, Bariatric and Metabolic Surgery: A Comprehensive Guide: Second Edition (pp. 973-986). doi:10.1007/978-3-030-60596-4_103
Sudlow, A. C., le Roux, C. W., & Pournaras, D. J. (2023). Concept of Metabolic Surgery. In Obesity, Bariatric and Metabolic Surgery: A Comprehensive Guide: Second Edition (pp. 965-971). doi:10.1007/978-3-030-60596-4_100
Professor Gil Lee
Li, P., Wdowicz, A., Fields, C., & Lee, G. (2023). Magnetic Tweezers: From Molecules to Cells. In Mechanics of Cells and Tissues in Diseases: Biomedical Methods: Volume 1 (Vol. 1, pp. 167-186). doi:10.1515/9783110640632-010
Professor Patricia Maguire
Szklanna, P. B., Weiss, L., Namee, B. M., Faryal, R., Kevane, B., Áinle, F. N., & Maguire, P. B. (2023). AI in Haematology. In AI in Clinical Medicine: A Practical Guide for Healthcare Professionals (pp. 184-191). doi:10.1002/9781119790686.ch18
Professor Paul McLoughlin
Butler, M., McLoughlin, P., & Keane, M. (2022). Chemokines, Adipokines, and Growth Factors in the Lung. In M. A. Grippi, D. E. Antin-Ozerkis, C. S. Dela Cruz, R. M. Kotloff, C. N. Kotton, & A. I. Pack (Eds.), Fishman's Pulmonary Diseases and Disorders (pp. 339-355). New York City: McGraw Hill LLC.
Assoc Professor Tara McMorrow
Gaspar, V. I., Cassidy, H., Slattery, C., Connolly, L., & McMorrow, T. (2023). In vitro-, ecological-, murine, and human models for examining the effects of EDCs. In Environmental Contaminants and Endocrine Health (pp. 45-53). doi:10.1016/B978-0-12-824464-7.00024-6
Professor Walter McNicholas
McNicholas, W. T. (2023). Impact of other respiratory conditions and disorders during sleep. In Encyclopedia of Sleep and Circadian Rhythms: Volume 1-6, Second Edition (pp. 521-528). doi:10.1016/B978-0-12-822963-7.00299-1
McNicholas, W. T. (2023). Sleep Disorders and Driving. In The Handbook of Fatigue Management in Transportation: Waking up to the Challenge (pp. 215-229). doi:10.1201/9781003213154-19
Assoc Professor Eoin O'Cearbhaill
Celikin, M., Azadi, A., Kim, H., Vaughan, T., & O’cearbhaill, E. (2023). Development of Magnesium-Strontium/ Calcium (Mg-Sr/Ca)-Based Alloys with Improved Sinterability for Next-Generation Biomedical Implants. In Unknown Book (pp. 175-180). doi:10.1007/978-3-031-22645-8_33
Assoc Professor Antoinette Perry
Cosgrave, J. M., & Perry, A. S. (2023). Therapeutic applications of the prostate cancer epigenome. In Epigenetic Cancer Therapy, Second Edition (pp. 301-337). doi:10.1016/B978-0-323-91367-6.00024-6
Professor Prem Puri
Chertin, B., Raisin, G., & Puri, P. (2022). Ureteropelvic Junction Obstructions. In Pediatric Surgery (pp. 1-16). Springer Berlin Heidelberg. doi:10.1007/978-3-642-38482-0_175-1
Friedmacher, F., & Puri, P. (2023). Endoscopic Treatment of Vesicoureteral Reflux. In Pediatric Surgery: Pediatric Urology (pp. 299-307). doi:10.1007/978-3-662-43567-0_179
Chertin, B., Raisin, G., & Puri, P. (2023). Ureteropelvic Junction Obstruction. In Pediatric Surgery: Pediatric Urology (pp. 233-248). doi:10.1007/978-3-662-43567-0_175
Paran, T. S., & Puri, P. (2023). Birth trauma. In Pediatric Surgery: Diagnosis and Management (pp. 219-228). doi:10.1007/978-3-030-81488-5_18
Paran, T. S., & Puri, P. (2023). Prune belly syndrome. In Pediatric Surgery: Diagnosis and Management (pp. 1371-1376). doi:10.1007/978-3-030-81488-5_98
Puri, P., & Kutasy, B. (2023). Vesicoureteral reflux. In Pediatric Surgery: Diagnosis and Management (pp. 1291-1305). doi:10.1007/978-3-030-81488-5_93
Paran, T. S., & Puri, P. (2023). Ureteric duplication anomalies. In Pediatric Surgery: Diagnosis and Management (pp. 1281-1289). doi:10.1007/978-3-030-81488-5_92
Friedmacher, F., & Puri, P. (2023). Variant Hirschsprung's disease. In Pediatric Surgery: Diagnosis and Management (pp. 949-966). doi:10.1007/978-3-030-81488-5_70
Puri, P. (2023). Hirschsprung's disease. In Pediatric Surgery: Diagnosis and Management (pp. 933-948). doi:10.1007/978-3-030-81488-5_69
Hughes, K., Mortell, A., & Puri, P. (2023). Duplications of the alimentary tract. In Pediatric Surgery: Diagnosis and Management (pp. 893-906). doi:10.1007/978-3-030-81488-5_66
Paran, T. S., & Puri, P. (2023). Sacrococcygeal teratoma. In Pediatric Surgery: Diagnosis and Management (pp. 625-632). doi:10.1007/978-3-030-81488-5_48
Muntean, A., Stoica, I., Gillick, J., & Puri, P. (2023). Pre-operative management and vascular access. In Pediatric Surgery: Diagnosis and Management (pp. 33-53). doi:10.1007/978-3-030-81488-5_4
Puri, P., & Nakazawa, N. (2023). Congenital diaphragmatic hernia. In Pediatric Surgery: Diagnosis and Management (pp. 463-474). doi:10.1007/978-3-030-81488-5_37
Rolle, U., & Puri, P. (2023). Transport of the surgical neonate. In Pediatric Surgery: Diagnosis and Management (pp. 25-32). doi:10.1007/978-3-030-81488-5_3
Chertin, B., Raisin, G., & Puri, P. (2023). Ureteropelvic Junction Obstruction. In Pediatric Surgery (pp. 1-16). Springer Berlin Heidelberg. doi:10.1007/978-3-642-38482-0_175-2
Dr Emmanuel Reynaud
Walter, A., Slezak, P., Mueller, R., & Kerckhofs, G. (Eds.) (2023). Bioimaging in Tissue Engineering and Regeneration. In . Springer International Publishing. doi:10.1007/978-3-030-85569-7

Conference Paper

Assoc Professor Marguerite Clyne
Carney, G., Clyne, M., & Ó'Cróinín, T. (2023). Aerobic acclimation and acquisition of fluoroquinolone resistance have a similar impact on the phenotype of Campylobacter isolates. In Microbiology Society Annual Conference 2023.
Dr Derek Costello
Galvin, D., Woods, M., McCormack, C., Paulose, A., Creaven, B., & Costello, D. (2023). A novel therapy for the treatment of TLR mediated neuroinflammation. In Brain and Neuroscience Advances Vol. 7 (pp. 156). Brighton, UK: SAGE Publishing. doi:10.1177/23982128231180246
Ralph, A., Fitzsimons, A., Galvin, D., Creaven, B., Blacque, O., & Costello, D. (2023). Investigating a novel coumarin-derivative in models of Alzheimer’s disease in vitro and in vivo. In Brain and Neuroscience Advances Vol. 7 (pp. 157). Brighton, UK: SAGE Publishing. doi:10.1177/2398212823118024
Abstract (2019). In Brain and Neuroscience Advances Vol. 3. SAGE Publications. doi:10.1177/2398212819855490
Professor Mark Crowe
Oral communications. (2022). In Reproduction in domestic animals = Zuchthygiene Vol. 57 Suppl 4 (pp. 49-61). doi:10.1111/rda.14243
Professor Breandán Kennedy
Brugnera, M., Messina, F., Reynolds, A., O'Reilly, N., Kalesnykas, G., Herrero-Vanrell, R., et al. (2022). Brain-derived neurotrophic factor-mimetic compounds in biodegradable microspheres as novel neuroprotective approaches for retinal diseases. In Acta Ophthalmologica Vol. 100. Wiley. doi:10.1111/j.1755-3768.2022.0369
Pendino, M., Garcia Mulero, S., Sanz Pamplona, R., Marcone, S., O'Connell, F., O'Sullivan, J., et al. (2023). Evaluating cannabinoid receptors as a therapeutic target for uveal melanoma. In BRITISH JOURNAL OF PHARMACOLOGY Vol. 180 (pp. 492-493).
Professor Walter Kolch
Hambly, R., Smith, C., Gatault, S., Martinez, L. I., Kearns, S., Rea, H., et al. (2022). B cell and complement signature in severe hidradenitis suppurativa which does not respond to adalimumab. In EXPERIMENTAL DERMATOLOGY Vol. 31 (pp. 54-55). WILEY.
Egan, D., Moran, B., Wilkinson, M., Pinyol, M., Guerra, E., Gatius, S., et al. (2022). CRABP2 – A novel biomarker for high-risk endometrial cancer. In Gynecologic Oncology Vol. 167 (pp. 314-322). doi:10.1016/j.ygyno.2022.09.020
Professor Carel Le Roux
Egan, D., Moran, B., Wilkinson, M., Pinyol, M., Guerra, E., Gatius, S., et al. (2022). CRABP2 – A novel biomarker for high-risk endometrial cancer. In Gynecologic Oncology Vol. 167 (pp. 314-322). doi:10.1016/j.ygyno.2022.09.020
Professor Patricia Maguire
Kelliher, S., Ní Áinle, F., Weiss, L., Gamba, S., Fouhy, E., Marchetti, M., et al. (2022). Analysis of the Platelet Proteome Reveals Insights into the Pro-Inflammatory and Pro-Thrombotic State Associated with the Philadelphia Chromosome-Negative Myeloproliferative Neoplasms. In Blood Vol. 140 (pp. 2654-2655). American Society of Hematology. doi:10.1182/blood-2022-167119
Professor Fionnuala McAuliffe
Ryan, G. A., Start, A. O., Cathcart, B., Hughes, H., Denona, B., Higgins, S., et al. (2022). Prenatal findings and associated survival rates in fetal ventriculomegaly: A prospective observational study. In International Journal of Gynecology and Obstetrics Vol. 159 (pp. 891-897). doi:10.1002/ijgo.14206
Dr Kieran Meade
Meade, K. (2022). Insights into the multifunctional roles of bovine host defence peptides in reproduction and immunity. In 37th Annual Meeting of the Association of Embryo Technology in Europe (AETE).
Assoc Professor Tadhg Ó'Cróinín
Carney, G., Clyne, M., & Ó'Cróinín, T. (2023). Aerobic acclimation and acquisition of fluoroquinolone resistance have a similar impact on the phenotype of Campylobacter isolates. In Microbiology Society Annual Conference 2023.
Whelan, M., Simpson, J., & Ó'Cróinín, T. (2023). A DNA Supercoiling - induced secretory phenotype enhances tight junction disruption, adherens junction breakdown and actin remodelling in 3D intestinal Spheroids for Campylobacter jejuni. In Annual Conference Microbiology Society 2023.
Dr Alison Reynolds
Brugnera, M., Messina, F., Reynolds, A., O'Reilly, N., Kalesnykas, G., Herrero-Vanrell, R., et al. (2022). Brain-derived neurotrophic factor-mimetic compounds in biodegradable microspheres as novel neuroprotective approaches for retinal diseases. In Acta Ophthalmologica Vol. 100. Wiley. doi:10.1111/j.1755-3768.2022.0369
Assoc Professor Albert Smolenski
O'Donoghue, L., Comer, S., von Kriegsheim, A., & Smolenski, A. (2022). RhoGAP6 interacts with delta-COP in platelets. In EMBO Workshop Modularity of Signaling proteins and networks.
O'Donoghue, L., Hiebner, D., Schoen, I., von Kriegsheim, A., & Smolenski, A. (2023). Is exercise an oxidant waiting to happen?. In UCD College of Health and Agricultural Sciences, Graduate Research Student Symposium.

Edited Book

Assoc Professor Tara McMorrow
Iban˜ez Gaspar, V., Cassidy, H., Slattery, C., Connolly, L., & McMorrow, T. (2023). Environmental Contaminants and Endocrine Health (1st edition ed.). O. Carnevali, & G. Hardiman (Eds.), London, United Kingdom: Elsevier Science Publishing Co Inc.

Journal article

Professor Alan Baird
Purves, K., Haverty, R., O'Neill, T., Folan, D., O'Reilly, S., Baird, A. W., et al. (2023). A novel antiviral formulation containing caprylic acid inhibits SARS-CoV-2 infection of a human bronchial epithelial cell model. The Journal of general virology, 104(2). doi:10.1099/jgv.0.001821
Professor Pietro Ballone
Cabriolu, R., Pollet, B. G., & Ballone, P. (2023). Effect of Organic Ions on The Formation and Collapse of Nanometric Bubbles in Ionic Liquid/Water Solutions: A Molecular Dynamics Study. Journal of Physical Chemistry B, 127(7), 1628-1644. doi:10.1021/acs.jpcb.2c07950
Forero-Martinez, N. C., Cortes-Huerto, R., Ward, L., & Ballone, P. (2023). Water Harvesting by Thermoresponsive Ionic Liquids: A Molecular Dynamics Study of the Water Absorption Kinetics and of the Role of Nanostructuring. Journal of Physical Chemistry B, 127(24), 5494-5508. doi:10.1021/acs.jpcb.3c01655
Assoc Professor John Baugh
Mthunzi, L., Rowan, S. C., Kostyunina, D. S., Baugh, J. A., Knaus, U. G., & McLoughlin, P. (2023). Gremlin 1 is required for macrophage M2 polarization. American journal of physiology. Lung cellular and molecular physiology, 325(2), L270-L276. doi:10.1152/ajplung.00163.2023
Dr Antonio Benedetto
Olson, W., He, R., Benedetto, A., Iskratsch, T., Shaitan, K., & Hall, D. (2022). Editors’ roundup: October 2022. Biophysical Reviews, 14(5), 1085-1091. doi:10.1007/s12551-022-01002-z
Professor Oliver Blacque
Chrystal, P. W., Lambacher, N. J., Doucette, L. P., Bellingham, J., Schiff, E. R., Noel, N. C. L., et al. (2022). The inner junction protein CFAP20 functions in motile and non-motile cilia and is critical for vision. Nature Communications, 13(1). doi:10.1038/s41467-022-33820-w
Professor Billy Bourke
Marek-Yagel, D., Stenke, E., Pode-Shakked, B., Dunne, C., Crushell, E., Bryce-Smith, A., et al. (2023). Nonsense mutation in the novel PERCC1 gene as a genetic cause of congenital diarrhea and enteropathy. Human Genetics, 142(5), 691-696. doi:10.1007/s00439-022-02486-1
Stenke, E., Stallard, L., Cooper, S., Dominik, A., Pilkington, A., Sugrue, S., et al. (2023). Mucosal Atrophy Predicts Poorer Outcomes in Pediatric Ulcerative Colitis—A National Inception Cohort Study. Journal of Pediatric Gastroenterology and Nutrition, 76(5), 603-609. doi:10.1097/MPG.0000000000003746
Professor David Brayden
Lundquist, P., Khodus, G., Niu, Z., Thwala, L. N., McCartney, F., Simoff, I., et al. (2022). Barriers to the Intestinal Absorption of Four Insulin-Loaded Arginine-Rich Nanoparticles in Human and Rat. ACS Nano, 16(9), 14210-14229. doi:10.1021/acsnano.2c04330
Khalid Danish, M., Gleeson, J. P., Brayden, D. J., Byrne, H. J., Frías, J. M., & Ryan, S. M. (2022). Formulation, Characterisation and Evaluation of the Antihypertensive Peptides, Isoleucine-Proline-Proline and Leucine-Lysine-Proline in Chitosan Nanoparticles Coated with Zein for Oral Drug Delivery. International Journal of Molecular Sciences, 23(19). doi:10.3390/ijms231911160
Twarog, C., Fattal, E., Noiray, M., Illel, B., Brayden, D. J., Taverna, M., & Hillaireau, H. (2022). Characterization of the physicochemical interactions between exenatide and two intestinal permeation enhancers: Sodium caprate (C<inf>10</inf>) and salcaprozate sodium (SNAC). International Journal of Pharmaceutics, 626. doi:10.1016/j.ijpharm.2022.122131
Brayden, D. J. (2022). Localised Delivery of Macromolecules to the Large Intestine: Translation to Clinical Trials. BioDrugs, 36(6), 687-700. doi:10.1007/s40259-022-00562-6
Forde, S., Vozza, G., Brayden, D. J., Byrne, H. J., Frías, J. M., & Ryan, S. M. (2023). Evaluation of Selenomethionine Entrapped in Nanoparticles for Oral Supplementation Using In Vitro, Ex Vivo and In Vivo Models. Molecules, 28(7). doi:10.3390/molecules28072941
Nair, V. V., Cabrera, P., Ramírez-Lecaros, C., Jara, M. O., Brayden, D. J., & Morales, J. O. (2023). Buccal delivery of small molecules and biologics: Of mucoadhesive polymers, films, and nanoparticles – An update. International Journal of Pharmaceutics, 636. doi:10.1016/j.ijpharm.2023.122789
Professor Donal Brennan
Beauchamp, K., Moran, B., O’Brien, T., Brennan, D., Crown, J., Sheahan, K., & Cotter, M. B. (2023). Carcinoma of unknown primary (CUP): an update for histopathologists. Cancer and Metastasis Reviews. doi:10.1007/s10555-023-10101-6
Bhatt, A., Glehen, O., Zivanovic, O., Brennan, D., Nadeau, C., Van Driel, W., & Bakrin, N. (2023). The 2022 PSOGI International Consensus on HIPEC Regimens for Peritoneal Malignancies: Epithelial Ovarian Cancer. Annals of Surgical Oncology. doi:10.1245/s10434-023-13932-3
Bhatt, A., Glehen, O., Bakrin, N., Brennan, D., & Van Driel, W. (2023). ASO Author Reflections: Which HIPEC Regimens Should be Used in Patients with Epithelial Ovarian Cancer? In the Clinic and in Randomized Trials. Annals of Surgical Oncology. doi:10.1245/s10434-023-13981-8
Cable, J., Rathmell, J. C., Pearce, E. L., Ho, P. C., Haigis, M. C., Mamedov, M. R., et al. (2023). Immunometabolism at the crossroads of obesity and cancer—a Keystone Symposia report. Annals of the New York Academy of Sciences, 1523(1), 38-50. doi:10.1111/nyas.14976
Nabhan, M., Egan, D., Kreileder, M., Zhernovkov, V., Timosenko, E., Slidel, T., et al. (2023). Deciphering the tumour immune microenvironment cell by cell. Immuno-Oncology and Technology, 18. doi:10.1016/j.iotech.2023.100383
Harmon, C., Zaborowski, A., Moore, H., St. Louis, P., Slattery, K., Duquette, D., et al. (2023). ?d T cell dichotomy with opposing cytotoxic and wound healing functions in human solid tumors. Nature Cancer, 4(8), 1122-1137. doi:10.1038/s43018-023-00589-w
Dr Eoin Brennan
Sandholm, N., Cole, J. B., Nair, V., Sheng, X., Liu, H., Ahlqvist, E., et al. (2022). Genome-wide meta-analysis and omics integration identifies novel genes associated with diabetic kidney disease. Diabetologia, 65(9), 1495-1509. doi:10.1007/s00125-022-05735-0
Martin, W. P., Nair, M., Chuah, Y. H. D., Malmodin, D., Pedersen, A., Abrahamsson, S., et al. (2022). Dietary restriction and medical therapy drives PPARa-regulated improvements in early diabetic kidney disease in male rats. Clinical Science, 136(21), 1485-1511. doi:10.1042/CS20220205
Smyth, L. J., Dahlström, E. H., Syreeni, A., Kerr, K., Kilner, J., Doyle, R., et al. (2022). Epigenome-wide meta-analysis identifies DNA methylation biomarkers associated with diabetic kidney disease. Nature Communications, 13(1). doi:10.1038/s41467-022-34963-6
Godson, C., Guiry, P., & Brennan, E. (2023). Lipoxin Mimetics and the Resolution of Inflammation. Annual Review of Pharmacology and Toxicology, 63, 429-448. doi:10.1146/annurev-pharmtox-051921-085407
Cañadas-Garre, M., Kunzmann, A. T., Anderson, K., Brennan, E. P., Doyle, R., Patterson, C. C., et al. (2023). Albuminuria-Related Genetic Biomarkers: Replication and Predictive Evaluation in Individuals with and without Diabetes from the UK Biobank. International Journal of Molecular Sciences, 24(13). doi:10.3390/ijms241311209
Dr Gary Brennan
Leavy, A., Brennan, G. P., & Jimenez-Mateos, E. M. (2022). MicroRNA Profiling Shows a Time-Dependent Regulation within the First 2 Months Post-Birth and after Mild Neonatal Hypoxia in the Hippocampus from Mice. Biomedicines, 10(11). doi:10.3390/biomedicines10112740
Engel, T., Brennan, G. P., & Soreq, H. (2022). Editorial: The molecular mechanisms of epilepsy and potential therapeutics. Frontiers in Molecular Neuroscience, 15. doi:10.3389/fnmol.2022.1064121
Brindley, E., Heiland, M., Mooney, C., Diviney, M., Mamad, O., Hill, T. D. M., et al. (2023). Brain cell-specific origin of circulating microRNA biomarkers in experimental temporal lobe epilepsy. Frontiers in Molecular Neuroscience, 16. doi:10.3389/fnmol.2023.1230942
Professor Lorraine Brennan
O'Neill, R. F., Brennan, L., Prinelli, F., Sergi, G., Trevisan, C., De Groot, L. C. P. G. M., et al. (2022). PROtein enriched MEDiterranean diet to combat undernutrition and promote healthy neuroCOGnitive ageing in older adults: The PROMED-COG consortium project. Nutrition Bulletin, 47(3), 356-365. doi:10.1111/nbu.12571
Livingstone, K. M., Brayner, B., Celis-Morales, C., Moschonis, G., Manios, Y., Traczyk, I., et al. (2022). Associations between dietary patterns, FTO genotype and obesity in adults from seven European countries. European Journal of Nutrition, 61(6), 2953-2965. doi:10.1007/s00394-022-02858-3
Young, H. A., Geurts, L., Scarmeas, N., Benton, D., Brennan, L., Farrimond, J., et al. (2022). Multi-nutrient interventions and cognitive ageing: are we barking up the right tree?. Nutrition research reviews, 1-13. doi:10.1017/s095442242200018x
Zare Jeddi, M., Hopf, N. B., Louro, H., Viegas, S., Galea, K. S., Pasanen-Kase, R., et al. (2022). Developing human biomonitoring as a 21st century toolbox within the European exposure science strategy 2020–2030. Environment International, 168. doi:10.1016/j.envint.2022.107476
Howard, J., Wynne, K., Moldenhauer, E., Clarke, P., Maguire, C., Bollard, S., et al. (2022). A comparative analysis of extracellular vesicles (EVs) from human and feline plasma. Scientific Reports, 12(1). doi:10.1038/s41598-022-14211-z
Clements, M., Heffernan, M., Ward, M., Hoey, L., Doherty, L. C., Hack Mendes, R., et al. (2022). A 2-Year Randomized Controlled Trial With Low-Dose B-Vitamin Supplementation Shows Benefits on Bone Mineral Density in Adults With Lower B12 Status. Journal of Bone and Mineral Research, 37(12), 2443-2455. doi:10.1002/jbmr.4709
Brennan, L., O'Gorman, A., Barth, S., Cadden, T., Dean, M., Doohan, F., et al. (2022). An innovative food system approach to diversifying protein intake: Protein-I: Shared Island sustainable healthy nutrition. Nutrition Bulletin, 47(4), 516-523. doi:10.1111/nbu.12590
Fiamoncini, J., Newman, J., & Brennan, L. (2022). Editorial: Postprandial physiology. Frontiers in Nutrition, 9. doi:10.3389/fnut.2022.1107480
Hillesheim, E., & Brennan, L. (2023). Metabotyping: A tool for identifying subgroups for tailored nutrition advice. Proceedings of the Nutrition Society. doi:10.1017/S0029665123000058
Padilha, M., Ferreira, A. L. L., Normando, P., Freire, S. D. S. R., Fiamoncini, J., Brennan, L., et al. (2023). Prepregnancy Body Mass Index and Lipoprotein Fractions are Associated with Changes in Women's Serum Metabolome from Late Pregnancy to the First Months of Postpartum. Journal of Nutrition, 153(1), 56-65. doi:10.1016/j.tjnut.2022.12.005
Tufford, A. R., Brennan, L., van Trijp, H., D'Auria, S., Feskens, E., Finglas, P., et al. (2023). A scientific transition to support the 21st century dietary transition. Trends in Food Science and Technology, 131, 139-150. doi:10.1016/j.tifs.2022.11.021
Gupta, S., Gormley, I. C., & Brennan, L. (2023). MetaboVariation: Exploring Individual Variation in Metabolite Levels. Metabolites, 13(2). doi:10.3390/metabo13020164
Turbitt, J., Brennan, L., Moffett, R. C., Flatt, P. R., Johnson, P. R. V., Tarasov, A. I., & McClenaghan, N. H. (2023). NKCC transport mediates the insulinotropic effects of taurine and other small neutral amino acids. Life Sciences, 316. doi:10.1016/j.lfs.2023.121402
Wirth, J., Hillesheim, E., & Brennan, L. (2023). Protein intake and its effect on sleep outcomes: a systematic review and meta-analysis of randomized controlled trials. Nutrition Reviews, 81(3), 333-345. doi:10.1093/nutrit/nuac061
O’Connell, F., Mylod, E., Donlon, N. E., Heeran, A. B., Butler, C., Bhardwaj, A., et al. (2023). Energy Metabolism, Metabolite, and Inflammatory Profiles in Human Ex Vivo Adipose Tissue Are Influenced by Obesity Status, Metabolic Dysfunction, and Treatment Regimes in Patients with Oesophageal Adenocarcinoma. Cancers, 15(6). doi:10.3390/cancers15061681
Buckley, C. E., Yin, X., Meltzer, S., Ree, A. H., Redalen, K. R., Brennan, L., et al. (2023). Energy Metabolism Is Altered in Radioresistant Rectal Cancer. International Journal of Molecular Sciences, 24(8). doi:10.3390/ijms24087082
Hillesheim, E., Yin, X., Sundaramoorthy, G. P., & Brennan, L. (2023). Using a Metabotype Framework to Deliver Personalized Nutrition Improves Dietary Quality and Metabolic Health Parameters: A 12-Week Randomized Controlled Trial. Molecular Nutrition and Food Research, 67(10). doi:10.1002/mnfr.202200620
Phelan, D. E., Mota, C., Strowitzki, M. J., Shigemura, M., Sznajder, J. I., Crowe, L., et al. (2023). Hypercapnia alters mitochondrial gene expression and acylcarnitine production in monocytes. Immunology and Cell Biology, 101(6), 556-577. doi:10.1111/imcb.12642
McNamara, A. E., Yin, X., Collins, C., & Brennan, L. (2023). Metabolomic based approach to identify biomarkers of broccoli intake. Food and Function, 14(18), 8586-8596. doi:10.1039/d2fo03988e
Professor Geraldine Butler
Bergin, S. A., Zhao, F., Ryan, A. P., Müller, C. A., Nieduszynski, C. A., Zhai, B., et al. (2022). Systematic Analysis of Copy Number Variations in the Pathogenic Yeast Candida parapsilosis Identifies a Gene Amplification in RTA3 That is Associated with Drug Resistance. mBio, 13(5). doi:10.1128/mbio.01777-22
Don, A., Byrne, K. P., Alqaderi, F., Mazhova, A., Chaney, B. O. L., Redmond, S., et al. (2022). Draft Genome Sequence of the Yeast Blastobotrys aristata Strain UCD613, Isolated from Soil in Ireland. Microbiology Resource Announcements, 11(11). doi:10.1128/mra.00957-22
Lombardi, L., Bergin, S. A., Ryan, A., Zuniga-Soto, E., & Butler, G. (2022). CRISPR-Cas9 Editing Induces Loss of Heterozygosity in the Pathogenic Yeast Candida parapsilosis. mSphere, 7(6). doi:10.1128/msphere.00393-22
Igharo, B., Byrne, K. P., Ghnewa, H., Davey, R. P., Fubara, A., Welc, J., et al. (2022). Draft Genome Sequence of the Yeast Torulaspora quercuum Strain UCD657, Isolated from Soil in Ireland. Microbiology Resource Announcements, 11(11). doi:10.1128/mra.00952-22
Branco, J., Ryan, A. P., Pinto e Silva, A., Butler, G., Miranda, I. M., & Rodrigues, A. G. (2022). Clinical azole cross-resistance in Candida parapsilosis is related to a novel MRR1 gain-of-function mutation. Clinical Microbiology and Infection, 28(12), 1655.e5-1655.e8. doi:10.1016/j.cmi.2022.08.014
Nourrisson, C., Moniot, M., Lavergne, R. A., Robert, E., Bonnin, V., Hagen, F., et al. (2023). Acquired fluconazole resistance and genetic clustering in Diutina (Candida) catenulata from clinical samples. Clinical Microbiology and Infection, 29(2), 257.e7-257.e11. doi:10.1016/j.cmi.2022.09.021
Barsh, G. S., Butler, G., Copenhaver, G. P., Crosson, S., Søgaard-Andersen, L., & Stukenbrock, E. H. (2023). Endless microbes most beautiful and most wonderful. PLoS Genetics, 19(4). doi:10.1371/journal.pgen.1010695
Daneshnia, F., Hilmioglu-Polat, S., Ilkit, M., Fuentes, D., Lombardi, L., Binder, U., et al. (2023). Whole-genome sequencing confirms a persistent candidaemia clonal outbreak due to multidrug-resistant Candida parapsilosis. Journal of Antimicrobial Chemotherapy, 78(6), 1488-1494. doi:10.1093/jac/dkad112
Daneshnia, F., Arastehfar, A., Lombardi, L., Binder, U., Scheler, J., Vahedi Shahandashti, R., et al. (2023). Candida parapsilosis isolates carrying mutations outside FKS1 hotspot regions confer high echinocandin tolerance and facilitate the development of echinocandin resistance. International Journal of Antimicrobial Agents, 62(1). doi:10.1016/j.ijantimicag.2023.106831
Assoc Professor Gerard Cagney
Zhang, W., Li, J., Silveira, C. P., Cai, Q., Dawson, K. A., Cagney, G., & Yan, Y. (2022). Nanoscale shape-dependent histone modifications.. PNAS nexus, 1(4), pgac172. doi:10.1093/pnasnexus/pgac172
Davis, J. L., Kennedy, C., Clerkin, S., Treacy, N. J., Dodd, T., Moss, C., et al. (2022). Single-cell multiomics reveals the complexity of TGFß signalling to chromatin in iPSC-derived kidney organoids. Communications biology, 5(1), 1301. doi:10.1038/s42003-022-04264-1
Susai, S. R., Healy, C., Mongan, D., Heurich, M., Byrne, J. F., Cannon, M., et al. (2022). Evidence that complement and coagulation proteins are mediating the clinical response to omega-3 fatty acids: A mass spectrometry-based investigation in subjects at clinical high-risk for psychosis. Translational Psychiatry, 12(1). doi:10.1038/s41398-022-02217-0
Assoc Professor Marguerite Clyne
Carney, G., Weimer, B. C., Clyne, M., & Cróinín, T. (2023). Different stages of the infection cycle are enriched for Campylobacter strains with distinct phenotypes and levels of fluoroquinolone resistance. Microbiology (United Kingdom), 169(6). doi:10.1099/mic.0.001349
Dr Daniel Crean
Phelan, D. E., Mota, C., Strowitzki, M. J., Shigemura, M., Sznajder, J. I., Crowe, L., et al. (2023). Hypercapnia alters mitochondrial gene expression and acylcarnitine production in monocytes. Immunology and Cell Biology, 101(6), 556-577. doi:10.1111/imcb.12642
Assoc Professor John Crean
McKiernan, E. P., Moloney, C., Chaudhuri, T. R., Clerkin, S., Behan, K., Straubinger, R. M., et al. (2022). Formation of hydrated PEG layers on magnetic iron oxide nanoflowers shows internal magnetisation dynamics and generates high in-vivo efficacy for MRI and magnetic hyperthermia. Acta Biomaterialia, 152, 393-405. doi:10.1016/j.actbio.2022.08.033
Davis, J. L., Kennedy, C., Clerkin, S., Treacy, N. J., Dodd, T., Moss, C., et al. (2022). Single-cell multiomics reveals the complexity of TGFß signalling to chromatin in iPSC-derived kidney organoids. Communications biology, 5(1), 1301. doi:10.1038/s42003-022-04264-1
Treacy, N. J., Clerkin, S., Davis, J. L., Kennedy, C., Miller, A. F., Saiani, A., et al. (2023). Growth and differentiation of human induced pluripotent stem cell (hiPSC)-derived kidney organoids using fully synthetic peptide hydrogels.. Bioactive materials, 21, 142-156. doi:10.1016/j.bioactmat.2022.08.003
Professor Mark Crowe
Cheng, Z., McLaughlin, D. L., Little, M. W., Ferris, C., Salavati, M., Ingvartsen, K. L., et al. (2023). Proportion of Concentrate in the Diet of Early Lactation Dairy Cows Has Contrasting Effects on Circulating Leukocyte Global Transcriptomic Profiles, Health and Fertility According to Parity. International Journal of Molecular Sciences, 24(1). doi:10.3390/ijms24010039
Rabaglino, M. B., Sánchez, J. M., Mc Donald, M., Crowe, M. A., O'Callaghan, E., & Lonergan, P. (2023). Transfer of bovine embryos into a uterus primed with high progesterone concentrations positively impacts fetal development at 42 days of gestation. Theriogenology, 200, 25-32. doi:10.1016/j.theriogenology.2023.01.020
Lonergan, P., Beltman, M., Butler, S. T., Crowe, M. A., Evans, A. C. O., Fair, T., et al. (2023). Editorial: Recent scientific advances in reproduction and fertility in ruminants: an overview of the 11th International Ruminant Reproduction Symposium, Galway, Ireland, 2023. Animal, 17. doi:10.1016/j.animal.2023.100903
Cheng, Z., Ferris, C., Crowe, M. A., Ingvartsen, K. L., Grelet, C., Vanlierde, A., et al. (2023). Hepatic Global Transcriptomic Profiles of Holstein Cows According to Parity Reveal Age-Related Changes in Early Lactation. International Journal of Molecular Sciences, 24(12). doi:10.3390/ijms24129906
Cheng, Z., Little, M. W., Ferris, C., Takeda, H., Ingvartsen, K. L., Crowe, M. A., & Wathes, D. C. (2023). Influence of the concentrate inclusion level in a grass silage–based diet on hepatic transcriptomic profiles in Holstein-Friesian dairy cows in early lactation. Journal of Dairy Science, 106(8), 5805-5824. doi:10.3168/jds.2022-22860
Dr Eoin Cummins
Strowitzki, M. J., Bleul, M., Tuffs, C., Dupovac, M., Blanco, A., Cummins, E. P., et al. (2023). Carbon dioxide attenuates PKC signaling and is sensed in monocytes and macrophages by a CA2-dependent, coupled intracellular pH-response. Physiology, 38(S1). doi:10.1152/physiol.2023.38.s1.5734238
Phelan, D. E., Mota, C., Strowitzki, M. J., Shigemura, M., Sznajder, J. I., Crowe, L., et al. (2023). Hypercapnia alters mitochondrial gene expression and acylcarnitine production in monocytes. Immunology and Cell Biology, 101(6), 556-577. doi:10.1111/imcb.12642
Professor Kenneth Dawson
Zhang, W., Li, J., Silveira, C. P., Cai, Q., Dawson, K. A., Cagney, G., & Yan, Y. (2022). Nanoscale shape-dependent histone modifications.. PNAS nexus, 1(4), pgac172. doi:10.1093/pnasnexus/pgac172
Fortino, V., Kinaret, P. A. S., Fratello, M., Serra, A., Saarimäki, L. A., Gallud, A., et al. (2022). Biomarkers of nanomaterials hazard from multi-layer data. Nature Communications, 13(1). doi:10.1038/s41467-022-31609-5
Wang, Y. F., Zhou, Y., Sun, J. B., Wang, X., Jia, Y., Ge, K., et al. (2023). The Yin and Yang of the protein corona on the delivery journey of nanoparticles. Nano Research, 16(1), 715-734. doi:10.1007/s12274-022-4849-6
Behan, J. A., Xie, Z., Wang, Y. F., Yang, X., Aastrup, T., Yan, Y., et al. (2023). Quartz Crystal Microbalance Method to Measure Nanoparticle-Receptor Interactions and Evaluate Nanoparticle Design Efficiency. JACS Au, 3(6), 1623-1633. doi:10.1021/jacsau.3c00084
Assoc Professor Neil Gerard Docherty
Sridhar, A., Khan, D., Abdelaal, M., Elliott, J. A., Naughton, V., Flatt, P. R., et al. (2022). Differential effects of RYGB surgery and best medical treatment for obesity-diabetes on intestinal and islet adaptations in obesediabetic ZDSD rats. PLoS ONE, 17(9 September). doi:10.1371/journal.pone.0274788
Martin, W. P., Nair, M., Chuah, Y. H. D., Malmodin, D., Pedersen, A., Abrahamsson, S., et al. (2022). Dietary restriction and medical therapy drives PPARa-regulated improvements in early diabetic kidney disease in male rats. Clinical Science, 136(21), 1485-1511. doi:10.1042/CS20220205
Di Capua, D. M., Shanahan, W., Bourke, M., Ramlaul, N., Appel, J., Canney, A., et al. (2023). Tumour stemness and poor clinical outcomes in haemochromatosis patients with hepatocellular carcinoma. Journal of Clinical Pathology. doi:10.1136/jcp-2022-208679
Harishkumar, R., Baranda-Alonso, E. M., Martin, W. P., & Docherty, N. G. (2023). Impact of time-restricted feeding on kidney injury in male rats with experimental metabolic syndrome. Experimental Physiology, 108(7), 925-931. doi:10.1113/EP091145
Dr Dearbhaile Dooley
Van Broeckhoven, J., Erens, C., Sommer, D., Scheijen, E., Sanchez, S., Vidal, P. M., et al. (2022). Macrophage-based delivery of interleukin-13 improves functional and histopathological outcomes following spinal cord injury. Journal of Neuroinflammation, 19(1). doi:10.1186/s12974-022-02458-2
Walsh, C. M., Wychowaniec, J. K., Costello, L., Brougham, D. F., & Dooley, D. (2023). An In Vitro and Ex Vivo Analysis of the Potential of GelMA Hydrogels as a Therapeutic Platform for Preclinical Spinal Cord Injury. Advanced Healthcare Materials. doi:10.1002/adhm.202300951
Walsh, C. M., Gull, K., & Dooley, D. (2023). Motor rehabilitation as a therapeutic tool for spinal cord injury: New perspectives in immunomodulation. Cytokine and Growth Factor Reviews, 69, 80-89. doi:10.1016/j.cytogfr.2022.08.005
Frantsuzov, R., Mondal, S., Walsh, C. M., Reynolds, J. P., Dooley, D., & MacManus, D. B. (2023). A finite element model of contusion spinal cord injury in rodents. Journal of the Mechanical Behavior of Biomedical Materials, 142. doi:10.1016/j.jmbbm.2023.105856
Vangansewinkel, T., Lemmens, S., Tiane, A., Geurts, N., Dooley, D., Vanmierlo, T., et al. (2023). Therapeutic administration of mouse mast cell protease 6 improves functional recovery after traumatic spinal cord injury in mice by promoting remyelination and reducing glial scar formation. FASEB Journal, 37(6). doi:10.1096/fj.202201942RR

Professor Guenther Eissner

Papait, A., Silini, A. R., Gazouli, M., Malvicini, R., Muraca, M., O’Driscoll, L., et al. (2022). Perinatal derivatives: How to best validate their immunomodulatory functions. Frontiers in Bioengineering and Biotechnology, 10. doi:10.3389/fbioe.2022.981061

Pozzobon, M., D’Agostino, S., Roubelakis, M. G., Cargnoni, A., Gramignoli, R., Wolbank, S., et al. (2022). General consensus on multimodal functions and validation analysis of perinatal derivatives for regenerative medicine applications. Frontiers in Bioengineering and Biotechnology, 10. doi:10.3389/fbioe.2022.961987

Silini, A. R., Ramuta, T. Ž., Pires, A. S., Banerjee, A., Dubus, M., Gindraux, F., et al. (2022). Methods and criteria for validating the multimodal functions of perinatal derivatives when used in oncological and antimicrobial applications. Frontiers in Bioengineering and Biotechnology, 10. doi:10.3389/fbioe.2022.958669

Doglio, M., Crossland, R. E., Alho, A. C., Penack, O., Dickinson, A. M., Stary, G., et al. (2022). Cell-based therapy in prophylaxis and treatment of chronic graft-versus-host disease. Frontiers in Immunology, 13. doi:10.3389/fimmu.2022.1045168

Eissner, G. (2023). Mesenchymal Stromal Cells “Think” Globally, but Act Locally. Cells, 12(3). doi:10.3390/cells12030509

Professor Alexander Evans

Alrabiah, N. A., Simintiras, C. A., Evans, A. C. O., Lonergan, P., & Fair, T. (2023). Biochemical alterations in the follicular fluid of bovine peri-ovulatory follicles and their association with final oocyte maturation. Reproduction and Fertility, 4(1). doi:10.1530/RAF-22-0090

Ryan, N. J., Brewer, A., Chapwanya, A., O’Farrelly, C., Williams, E. J., Evans, A. C. O., et al. (2023). A preliminary analysis of the variation in circulating 25-hydroxycholecalciferol concentrations in peri-partum spring-calving dairy cows. Veterinary Research Communications, 47(1), 311-318. doi:10.1007/s11259-022-09946-z

Liu, W., Zhao, L., Chen, Y., Shen, Y., Luo, Z., Chen, Y., et al. (2023). Soil properties and silage quality in response to oat and pea seeding ratios and harvest stage on the Qinghai-Tibetan Plateau. Frontiers in Sustainable Food Systems, 7. doi:10.3389/fsufs.2023.1143431

Baker, S., Lynch, M. B., Godwin, F., Boland, T. M., Kelly, A. K., Evans, A. C. O., et al. (2023). Multispecies swards outperform perennial ryegrass under intensive beef grazing. Agriculture, Ecosystems and Environment, 345. doi:10.1016/j.agee.2022.108335

Lonergan, P., Beltman, M., Butler, S. T., Crowe, M. A., Evans, A. C. O., Fair, T., et al. (2023). Editorial: Recent scientific advances in reproduction and fertility in ruminants: an overview of the 11th International Ruminant Reproduction Symposium, Galway, Ireland, 2023. Animal, 17. doi:10.1016/j.animal.2023.100903

Mossa, F., & Evans, A. C. O. (2023). Review: The ovarian follicular reserve – implications for fertility in ruminants. Animal, 17. doi:10.1016/j.animal.2023.100744

Baker, S., Lynch, M. B., Godwin, F., Boland, T. M., Evans, A. C. O., Murphy, P. N. C., et al. (2023). A comparison of the nutritive value of perennial ryegrass, perennial ryegrass and white clover and multispecies-based farmlet systems. Grassland Research, 2(2), 129-139. doi:10.1002/glr2.12052

Assoc Professor Paul Evans

Khalifa, A., Redmond, R., Sánchez-Sanz, G., & Evans, P. (2022). Reduction of Substituted Benzo-Fused Cyclic Sulfonamides with Mg-MeOH: An Experimental and Computational Study. Journal of Organic Chemistry, 87(18), 12087-12095. doi:10.1021/acs.joc.2c01169

Professor Aurelie Fabre

O'Callaghan, M., Rooney, L., Khan, J., Flanagan, S., Keane, M. P., Fabre, A., et al. (2022). A Man With Malaise, Myalgia, and Rapidly Progressive Interstitial Lung Disease. Chest, 162(3), e111-e116. doi:10.1016/j.chest.2022.03.052

Terwiel, M., Borie, R., Crestani, B., Galvin, L., Bonella, F., Fabre, A., et al. (2022). Genetic testing in interstitial lung disease: An international survey. Respirology, 27(9), 747-757. doi:10.1111/resp.14303

Hayes, C. J., O'Farrell, N. J., Fabre, A., & Hurley, K. (2022). A 19-Year-Old Man with a Cavitating Lung Lesion. Annals of the American Thoracic Society, 19(11), 1920-1924. doi:10.1513/AnnalsATS.202202-129CC

McNally, E., Cronje, L., Fabre, A., & Moloney, E. (2022). Pulmonary mucosa-associated lymphoid tissue (MALT) lymphoma associated with coeliac disease. BMJ Case Reports, 15(11). doi:10.1136/bcr-2022-250423

O’Brien, C., Duignan, J. A., Gleeson, M., O’Carroll, O., Franciosi, A. N., O’Toole, D., et al. (2022). Quantitative Airway Assessment of Diffuse Idiopathic Pulmonary Neuroendocrine Cell Hyperplasia (DIPNECH) on CT as a Novel Biomarker. Diagnostics, 12(12). doi:10.3390/diagnostics12123096

Di Capua, D. M., Shanahan, W., Bourke, M., Ramlaul, N., Appel, J., Canney, A., et al. (2023). Tumour stemness and poor clinical outcomes in haemochromatosis patients with hepatocellular carcinoma. Journal of Clinical Pathology. doi:10.1136/jcp-2022-208679

O'Callaghan, M., Duignan, J., Tarling, E. J., Waters, D. K., McStay, M., O'Carroll, O., et al. (2023). Analysis of tissue lipidomics and computed tomography pulmonary fat attenuation volume (CT<inf>PFAV</inf>) in idiopathic pulmonary fibrosis. Respirology. doi:10.1111/resp.14582

O'Connor, D., Fabre, A., & Gibbons, D. (2023). Application of a Standardized Terminology and Nomenclature for Respiratory Cytology: Experience from a Large Tertiary Respiratory Cancer Centre. Acta Cytologica, 67(1), 46-54. doi:10.1159/000527435

Borie, R., Kannengiesser, C., Antoniou, K., Bonella, F., Crestani, B., Fabre, A., et al. (2023). European Respiratory Society statement on familial pulmonary fibrosis. European Respiratory Journal, 61(3). doi:10.1183/13993003.01383-2022

Granahan, A., Fabre, A., Ryan, A., & Lally, A. (2023). A rapidly enlarging nonpigmented nodule on the chest wall. Clinical and experimental dermatology, 48(4), 426-428. doi:10.1093/ced/llac139

Professor Oliver Fitzgerald

Soomro, M., Stadler, M., Dand, N., Bluett, J., Jadon, D., Jalali-najafabadi, F., et al. (2022). Comparative Genetic Analysis of Psoriatic Arthritis and Psoriasis for the Discovery of Genetic Risk Factors and Risk Prediction Modeling. Arthritis and Rheumatology, 74(9), 1535-1543. doi:10.1002/art.42154

Gurke, R., Bendes, A., Bowes, J., Koehm, M., Twyman, R. M., Barton, A., et al. (2022). Omics and Multi-Omics Analysis for the Early Identification and Improved Outcome of Patients with Psoriatic Arthritis. Biomedicines, 10(10). doi:10.3390/biomedicines10102387

Coates, L. C., Soriano, E. R., Corp, N., Bertheussen, H., Callis Duffin, K., Campanholo, C. B., et al. (2022). Author Correction: Group for Research and Assessment of Psoriasis and Psoriatic Arthritis (GRAPPA): updated treatment recommendations for psoriatic arthritis 2021 (Nature Reviews Rheumatology, (2022), 18, 8, (465-479), 10.1038/s41584-022-00798-0). Nature Reviews Rheumatology, 18(12), 734. doi:10.1038/s41584-022-00861-w

Orbai, A. M., Mease, P. J., Helliwell, P. S., FitzGerald, O., Fleishaker, D. L., Mundayat, R., & Young, P. (2022). Effect of tofacitinib on dactylitis and patient-reported outcomes in patients with active psoriatic arthritis: post-hoc analysis of phase III studies. BMC Rheumatology, 6(1). doi:10.1186/s41927-022-00298-4

Leung, Y. Y., Korotaeva, T., Candia, L., Pedersen, S. J., Molano, W. B., Ruderman, E. M., et al. (2022). Erratum: Management of Peripheral Arthritis in Patients With Psoriatic Arthritis: An Updated Literature Review Informing the 2021 GRAPPA Treatment Recommendations (J Rheumatol (2022) DOI: 10.3899/jrheum.220315). Journal of Rheumatology, 49(12), 1. doi:10.3899/jrheum.220315.C1

Dr Nicola Fletcher

Reynolds, L. J., Gonzalez, G., Sala-Comorera, L., Martin, N. A., Byrne, A., Fennema, S., et al. (2022). SARS-CoV-2 variant trends in Ireland: Wastewater-based epidemiology and clinical surveillance. Science of the Total Environment, 838. doi:10.1016/j.scitotenv.2022.155828

Purves, K., Haverty, R., O'Neill, T., Folan, D., O'Reilly, S., Baird, A. W., et al. (2023). A novel antiviral formulation containing caprylic acid inhibits SARS-CoV-2 infection of a human bronchial epithelial cell model. The Journal of general virology, 104(2). doi:10.1099/jgv.0.001821

Martin, N. A., Gonzalez, G., Reynolds, L. J., Bennett, C., Campbell, C., Nolan, T. M., et al. (2023). Adeno-Associated Virus 2 and Human Adenovirus F41 in Wastewater during Outbreak of Severe Acute Hepatitis in Children, Ireland. Emerging Infectious Diseases, 29(4), 751-760. doi:10.3201/eid2904.221878

Professor William Gallagher

Mazo, C., Aura, C., Rahman, A., Gallagher, W. M., & Mooney, C. (2022). Application of Artificial Intelligence Techniques to Predict Risk of Recurrence of Breast Cancer: A Systematic Review. Journal of Personalized Medicine, 12(9). doi:10.3390/jpm12091496

Krzyzanowska, A., Barron, S., Loughman, T., Higgins, D. F., Sheehan, K. M., Chan-Ju Wang, A., et al. (2022). 1411P Development and validation of a novel six-gene signature to accurately risk stratify men with early-stage prostate cancer to aid in treatment decision making. Annals of Oncology, 33, S1190. doi:10.1016/j.annonc.2022.07.1897

Antoranz, A., Van Herck, Y., Bolognesi, M. M., Lynch, S. M., Rahman, A., Gallagher, W. M., et al. (2022). Mapping the Immune Landscape in Metastatic Melanoma Reveals Localized Cell–Cell Interactions That Predict Immunotherapy Response. Cancer Research, 82(18), 3275-3290. doi:10.1158/0008-5472.CAN-22-0363

Miller, I. S., Khan, S., Shiels, L. P., Das, S., O' Farrell, A. C., Connor, K., et al. (2022). Implementing subtype-specific pre-clinical models of breast cancer to study pre-treatment aspirin effects. Cancer Medicine, 11(20), 3820-3836. doi:10.1002/cam4.4756

Azam, H., Maher, S., Clarke, S., Carruthers, N., Marcone, S., Gallagher, W., & Prencipe, M. (2022). Serum response factor and androgen receptor; partners in crime in prostate cancer progression. European Urology Open Science, 44, S216. doi:10.1016/s2666-1683(22)01976-0

Connor, K., Conroy, E., White, K., Shiels, L., Keek, S., Ibrahim, A., et al. (2022). MODL-24. ESTABLISHING A CLINICALLY RELEVANT CT AND ASSOCIATED RADIOMICS PIPELINE FOR INTRACRANIAL RODENT TUMOUR MODELS. Neuro-Oncology, 24(Supplement_7), vii295-vii296. doi:10.1093/neuonc/noac209.1151

Wahlin, S., Boman, K., Moran, B., Nodin, B., Gallagher, W. M., Karnevi, E., & Jirström, K. (2022). Pre-clinical and clinical studies on the role of RBM3 in muscle-invasive bladder cancer: longitudinal expression, transcriptome-level effects and modulation of chemosensitivity. BMC Cancer, 22(1). doi:10.1186/s12885-021-09168-7

Azam, H., Maher, S., Clarke, S., Gallagher, W. M., & Prencipe, M. (2023). SRF inhibitors reduce prostate cancer cell proliferation through cell cycle arrest in an isogenic model of castrate-resistant prostate cancer. Cell Cycle, 22(14-16), 1759-1776. doi:10.1080/15384101.2023.2229713

Krzyzanowska, A., Barron, S., Higgins, D. F., Loughman, T., O'Neill, A., Sheehan, K. M., et al. (2023). Development, Validation, and Clinical Utility of a Six-gene Signature to Predict Aggressive Prostate Cancer. European Urology Focus. doi:10.1016/j.euf.2023.04.004

Slater, K., Bosch, R., Smith, K. F., Jahangir, C. A., Garcia-Mulero, S., Rahman, A., et al. (2023). 1,4-dihydroxy quininib modulates the secretome of uveal melanoma tumour explants and a marker of oxidative phosphorylation in a metastatic xenograft model. Frontiers in Medicine, 9. doi:10.3389/fmed.2022.1036322

Krzyzanowska, A., Barron, S., Higgins, D., Loughman, T., Sheehan, K., Chan-Ju Wang, A., et al. (2023). Development and clinical validation of a novel biopsy-based six-gene signature to accurately risk-stratify men with early-stage prostate cancer to aid treatment decision making.. Journal of Clinical Oncology, 41(6_suppl), 374. doi:10.1200/jco.2023.41.6_suppl.374

Krzyzanowska, A., Barron, S., Higgins, D. F., Loughman, T., Sheehan, K. M., Chan-Ju Wang, A., et al. (2023). MP17-08 CLINICAL VALIDATION OF A NOVEL SIX-GENE RISK-STRATIFICATION SIGNATURE TO SUPPORT TREATMENT DECISIONS FOR MEN DIAGNOSED WITH PROSTATE CANCER. Journal of Urology, 209(Supplement 4). doi:10.1097/ju.0000000000003237.08

Kinsella, Z., Blümel, A., Lucas, M., Lindner, A., Gonzalez, C. A., Rahman, A., et al. (2023). Abstract 5787: Modelling the spatial heterogeneity of CD45-positive tumor infiltrating lymphocytes in early-stage, estrogen receptor-positive breast cancer. Cancer Research, 83(7_Supplement), 5787. doi:10.1158/1538-7445.am2023-5787

Lucas, M. W., Hurley, C., Kinsella, Z., Gonzalez, C., Burke, C., Rahman, A., et al. (2023). 78P Multiplex immunohistochemistry and digital pathology analysis examining the prevalence and prognostic value of tertiary lymphoid structures in early stage hormone positive, HER2-negative breast cancer. ESMO Open, 8(1), 101301. doi:10.1016/j.esmoop.2023.101301

Lucas, M., Kinsella, Z., Gonzalez, C. A., Hurley, C., O'Grady, A., Fay, J., et al. (2023). The immune microenvironment in hormone positive, HER2 negative breast cancer: A focus on tumour infiltrating lymphocytes, spatial phenotypes and tertiary lymphoid structures.. Journal of Clinical Oncology, 41(16_suppl), 2522. doi:10.1200/jco.2023.41.16_suppl.2522

Page, D. B., Broeckx, G., Jahangir, C. A., Verbandt, S., Gupta, R. R., Thagaard, J., et al. (2023). Spatial analyses of immune cell infiltration in cancer: current methods and future directions. A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer. Journal of Pathology, 260(5), 514-532. doi:10.1002/path.6165

Thagaard, J., Broeckx, G., Page, D. B., Jahangir, C. A., Verbandt, S., Kos, Z., et al. (2023). Pitfalls in machine learning-based assessment of tumor-infiltrating lymphocytes in breast cancer: a report of the international immuno-oncology biomarker working group. Journal of Pathology, 260(5), 498-513. doi:10.1002/path.6155

Dr Virginie Gautier

Singh, S., O’Reilly, S., Gewaid, H., Bowie, A. G., Gautier, V., & Worrall, D. M. (2022). Reactive Centre Loop Mutagenesis of SerpinB3 to Target TMPRSS2 and Furin: Inhibition of SARS-CoV-2 Cell Entry and Replication. International Journal of Molecular Sciences, 23(20). doi:10.3390/ijms232012522

Kenny, G., Negi, R., O'Reilly, S., Garcia-Leon, A., Alalwan, D., Gaillard, C. M., et al. (2022). Performance and validation of an adaptable multiplex assay for detection of serologic response to SARS-CoV-2 infection or vaccination. Journal of Immunological Methods, 510. doi:10.1016/j.jim.2022.113345

Hennessy, N. T., Toomey, S., Gautier, V., O’Reilly, S., de Barra, E., Hanrahan, E. O., & Hennessy, B. T. (2022). COVID-19 contamination of high-touch surfaces in the public domain. Irish Journal of Medical Science, 191(6), 2839-2840. doi:10.1007/s11845-021-02881-z

Byrne, J., Gu, L., Negi, R., Garcia-Leon, A., Alalwan, D., Gaillard, C. M., et al. (2022). 1959. Lower B-Cell Responses Rather Than Circulating Antibody Titres Are Associated With SARS-CoV-2 Infection Post Third Dose COVID-19 Vaccination.Open Forum Infectious Diseases, 9(Supplement_2). doi:10.1093/ofid/ofac492.1585

Kenny, G., O’Reilly, S. R., Negi, R., Garcia-Leon, A., Alalwan, D., Gaillard, C. M., et al. (2022). 312. Performance and validation of an adaptable multiplex assay for detection of serologic response to SARS-CoV-2 infection or vaccination.. Open Forum Infectious Diseases, 9(Supplement_2). doi:10.1093/ofid/ofac492.390

O’Reilly, S. R., Kenny, G., Alrawahneh, T., Francois, N., Angeliadis, M., de Masson d’Autume, V., et al. (2022). 1057. Development of a Flow Cytometry-Based Micro-Neutralisation Assay to Evaluate Humoral Immunity Against SARS-CoV-2 Variants of Concern in Vaccine Trials.Open Forum Infectious Diseases, 9(Supplement_2). doi:10.1093/ofid/ofac492.898

Professor Declan Gilheany

Al-Sulaimi, S., Rajendran, K., Nikitin, K., & Gilheany, D. G. (2023). Unexpected rapid P-stereomutation of phosphine oxides catalysed by chlorophosphonium salts. Chemical Communications. doi:10.1039/d3cc03719c

Dr Jeffrey Glennon

van As, D., van Cruchten, R., Glennon, J., van Engelen, B., & 't Hoen, P. (2022). P.204 Blood based biomarker discovery in DM1. Neuromuscular Disorders, 32, S130. doi:10.1016/j.nmd.2022.07.366

Tielbeek, J. J., Uffelmann, E., Williams, B. S., Colodro-Conde, L., Gagnon, É., Mallard, T. T., et al. (2022). Uncovering the genetic architecture of broad antisocial behavior through a genome-wide association study meta-analysis. Molecular Psychiatry, 27(11), 4453-4463. doi:10.1038/s41380-022-01793-3

de Voogd, L. D., Kampen, R. A., Kaldewaij, R., Zhang, W., Hashemi, M. M., Koch, S. B. J., et al. (2022). Trauma-induced human glucocorticoid receptor expression increases predict subsequent HPA-axis blunting in a prospective longitudinal design. Psychoneuroendocrinology, 146. doi:10.1016/j.psyneuen.2022.105909

van Cruchten, R. T. P., van As, D., Glennon, J. C., van Engelen, B. G. M., ‘t Hoen, P. A. C., Okkersen, K., et al. (2022). Clinical improvement of DM1 patients reflected by reversal of disease-induced gene expression in blood. BMC Medicine, 20(1). doi:10.1186/s12916-022-02591-y

van den Berk-Smeekens, I., de Korte, M. W. P., van Dongen-Boomsma, M., Oosterling, I. J., den Boer, J. C., Barakova, E. I., et al. (2022). Pivotal Response Treatment with and without robot-assistance for children with autism: a randomized controlled trial. European Child and Adolescent Psychiatry, 31(12), 1871-1883. doi:10.1007/s00787-021-01804-8

Tsetsos, F., Topaloudi, A., Jain, P., Yang, Z., Yu, D., Kolovos, P., et al. (2023). Genome-wide Association Study Points to Novel Locus for Gilles de la Tourette Syndrome. Biological Psychiatry. doi:10.1016/j.biopsych.2023.01.023

Aggensteiner, P. M., Holz, N. E., Böttinger, B. W., Baumeister, S., Hohmann, S., Werhahn, J. E., et al. (2023). The effects of callous-unemotional traits and aggression subtypes on amygdala activity in response to negative faces - ERRATUM. Psychological medicine, 53(1), 304. doi:10.1017/S0033291720003049

Widomska, J., De Witte, W., Buitelaar, J. K., Glennon, J. C., & Poelmans, G. (2023). Molecular Landscape of Tourette’s Disorder. International Journal of Molecular Sciences, 24(2). doi:10.3390/ijms24021428

Puzio, M., Moreton, N., Sullivan, M., Scaife, C., Glennon, J. C., & O’Connor, J. J. (2023). An Electrophysiological and Proteomic Analysis of the Effects of the Superoxide Dismutase Mimetic, MnTMPyP, on Synaptic Signalling Post-Ischemia in Isolated Rat Hippocampal Slices. Antioxidants, 12(4). doi:10.3390/antiox12040792

Grandjean, J., Desrosiers-Gregoire, G., Anckaerts, C., Angeles-Valdez, D., Ayad, F., Barrière, D. A., et al. (2023). A consensus protocol for functional connectivity analysis in the rat brain. Nature Neuroscience, 26(4), 673-681. doi:10.1038/s41593-023-01286-8

Grandjean, J., Desrosiers-Gregoire, G., Anckaerts, C., Angeles-Valdez, D., Ayad, F., Barrière, D. A., et al. (2023). Author Correction: A consensus protocol for functional connectivity analysis in the rat brain (Nature Neuroscience, (2023), 26, 4, (673-681), 10.1038/s41593-023-01286-8). Nature Neuroscience, 26(6), 1127-1128. doi:10.1038/s41593-023-01328-1

Sullivan, M., Fernandez-Aranda, F., Camacho-Barcia, L., Harkin, A., Macrì, S., Mora-Maltas, B., et al. (2023). Insulin and disorders of behavioural flexibility. Neuroscience and Biobehavioral Reviews, 150. doi:10.1016/j.neubiorev.2023.105169

Mahon, N., & Glennon, J. C. (2023). The bi-directional relationship between sleep and inflammation in muscular dystrophies: A narrative review. Neuroscience and Biobehavioral Reviews, 150. doi:10.1016/j.neubiorev.2023.105116

Holz, N. E., Floris, D. L., Llera, A., Aggensteiner, P. M., Kia, S. M., Wolfers, T., et al. (2023). Age-related brain deviations and aggression. Psychological Medicine, 53(9), 4012-4021. doi:10.1017/S003329172200068X

Professor Catherine Godson

Sandholm, N., Cole, J. B., Nair, V., Sheng, X., Liu, H., Ahlqvist, E., et al. (2022). Genome-wide meta-analysis and omics integration identifies novel genes associated with diabetic kidney disease. Diabetologia, 65(9), 1495-1509. doi:10.1007/s00125-022-05735-0

Martin, W. P., Nair, M., Chuah, Y. H. D., Malmodin, D., Pedersen, A., Abrahamsson, S., et al. (2022). Dietary restriction and medical therapy drives PPARa-regulated improvements in early diabetic kidney disease in male rats. Clinical Science, 136(21), 1485-1511. doi:10.1042/CS20220205

Smyth, L. J., Dahlström, E. H., Syreeni, A., Kerr, K., Kilner, J., Doyle, R., et al. (2022). Epigenome-wide meta-analysis identifies DNA methylation biomarkers associated with diabetic kidney disease. Nature Communications, 13(1). doi:10.1038/s41467-022-34963-6

Godson, C., Guiry, P., & Brennan, E. (2023). Lipoxin Mimetics and the Resolution of Inflammation. Annual Review of Pharmacology and Toxicology, 63, 429-448. doi:10.1146/annurev-pharmtox-051921-085407

Cañadas-Garre, M., Kunzmann, A. T., Anderson, K., Brennan, E. P., Doyle, R., Patterson, C. C., et al. (2023). Albuminuria-Related Genetic Biomarkers: Replication and Predictive Evaluation in Individuals with and without Diabetes from the UK Biobank. International Journal of Molecular Sciences, 24(13). doi:10.3390/ijms241311209

Professor Stephen Gordon

Correia, C. N., McHugo, G. P., Browne, J. A., McLoughlin, K. E., Nalpas, N. C., Magee, D. A., et al. (2022). High-resolution transcriptomics of bovine purified protein derivative-stimulated peripheral blood from cattle infected with Mycobacterium bovis across an experimental time course. Tuberculosis, 136. doi:10.1016/j.tube.2022.102235

Ma, R., & Gordon, S. V. (2022). Pyruvate supplementation and Mycobacterium bovis: A caveat. Tuberculosis, 136. doi:10.1016/j.tube.2022.102257

Thapa, J., Gordon, S. V., Nakajima, C., & Suzuki, Y. (2022). Threat from Mycobacterium orygis-associated tuberculosis in south Asia. The Lancet Microbe, 3(9), e641-e642. doi:10.1016/S2666-5247(22)00149-5

Lundahl, M. L. E., Mitermite, M., Ryan, D. G., Case, S., Williams, N. C., Yang, M., et al. (2022). Macrophage innate training induced by IL-4 and IL-13 activation enhances OXPHOS driven anti-mycobacterial responses. eLife, 11. doi:10.7554/eLife.74690

Flores-Villalva, S., Remot, A., Carreras, F., Winter, N., Gordon, S. V., & Meade, K. G. (2023). Vitamin D induced microbicidal activity against Mycobacterium bovis BCG is dependent on the synergistic activity of bovine peripheral blood cell populations. Veterinary Immunology and Immunopathology, 256. doi:10.1016/j.vetimm.2022.110536

Kapalamula, T. F., Kawonga, F., Shawa, M., Chizimu, J., Thapa, J., Nyenje, M. E., et al. (2023). Prevalence and risk factors of bovine tuberculosis in slaughtered cattle, Malawi. Heliyon, 9(2). doi:10.1016/j.heliyon.2023.e13647

Flores-Villalva, S., Reid, C., Remot, A., Gordon, S. V., & Meade, K. G. (2023). Long term dietary vitamin D<inf>3</inf> supplementation impacts both microbicidal and inflammatory responses to ex-vivo Mycobacterium bovis BCG challenge in dairy calves. Veterinary Immunology and Immunopathology, 258. doi:10.1016/j.vetimm.2023.110575

Matthews, C., Walsh, A. M., Gordon, S. V., Markey, B., Cotter, P. D., & O' Mahony, J. (2023). Differences in Faecal Microbiome Taxonomy, Diversity and Functional Potential in a Bovine Cohort Experimentally Challenged with Mycobacterium avium subsp. paratuberculosis (MAP). Animals, 13(10). doi:10.3390/ani13101652

Thapa, J., Chizimu, J. Y., Kitamura, S., Akapelwa, M. L., Suwanthada, P., Miura, N., et al. (2023). Characterization of DNA Gyrase Activity and Elucidation of the Impact of Amino Acid Substitution in GyrA on Fluoroquinolone Resistance in Mycobacterium avium. Microbiology Spectrum, 11(3). doi:10.1128/spectrum.05088-22

Hailu, E., Cantillon, D., Madrazo, C., Rose, G., Wheeler, P. R., Golby, P., et al. (2023). Lack of methoxy-mycolates characterizes the geographically restricted lineage 7 of Mycobacterium tuberculosis complex. Microbial Genomics, 9(5). doi:10.1099/mgen.0.001011

Mitermite, M., Elizari, J. M. U., Ma, R., Farrell, D., & Gordon, S. V. (2023). Exploring virulence in Mycobacterium bovis: clues from comparative genomics and perspectives for the future. Irish Veterinary Journal, 76. doi:10.1186/s13620-023-00257-6

Professor Aoife Gowen

Wieme, J., Mollazade, K., Malounas, I., Zude-Sasse, M., Zhao, M., Gowen, A., et al. (2022). Application of hyperspectral imaging systems and artificial intelligence for quality assessment of fruit, vegetables and mushrooms: A review. Biosystems Engineering, 222, 156-176. doi:10.1016/j.biosystemseng.2022.07.013

Xu, J. -L., Lin, X., & Gowen, A. A. (2022). Combining machine learning with meta-analysis for predicting cytotoxicity of micro- and nanoplastics. Journal of Hazardous Materials Advances, 8, 100175. doi:10.1016/j.hazadv.2022.100175

Swanson, A., Soro, A. B., Hannon, S., Whyte, P., Bolton, D. J., Tiwari, B. K., & Gowen, A. (2022). Visible spectral imaging (443–726 nm) for evaluating ultraviolet decontamination and predicting bacterial spoilage of vacuum packed chicken breasts. LWT, 169. doi:10.1016/j.lwt.2022.113996

Mishra, P., Passos, D., Marini, F., Xu, J., Amigo, J. M., Gowen, A. A., et al. (2022). Deep learning for near-infrared spectral data modelling: Hypes and benefits. TrAC - Trends in Analytical Chemistry, 157. doi:10.1016/j.trac.2022.116804

Xu, J. L., Herrero-Langreo, A., Lamba, S., Ferone, M., Swanson, A., Caponigro, V., et al. (2022). Exploring the identification of multiple bacteria on stainless steel using multi-scale spectral imaging from microscopic to macroscopic. Scientific Reports, 12(1). doi:10.1038/s41598-022-19617-3

Martinez-Gonzalez, J. A., Nandi, P. K., English, N. J., & Gowen, A. (2022). Vibrational Analysis of Hydration-Layer Water around Ubiquitin, Unpeeled Layer by Layer: Molecular-Dynamics Perceptions. International Journal of Molecular Sciences, 23(24). doi:10.3390/ijms232415949

Xu, J. L., Lin, X., Wang, J. J., & Gowen, A. A. (2022). A review of potential human health impacts of micro- and nanoplastics exposure. Science of the Total Environment, 851. doi:10.1016/j.scitotenv.2022.158111

Caponigro, V., Marini, F., Scannell, A. G. M., & Gowen, A. A. (2023). Single-drop technique for lactose prediction in dry milk on metallic surfaces: Comparison of Raman, FT – NIR, and FT – MIR spectral imaging. Food Control, 144. doi:10.1016/j.foodcont.2022.109351

Professor Andrew Green

Forman, E. B., Lynch, S. A., Knerr, I., Monavari, A., Hughes, J., Boruah, R., et al. (2023). An approach to recognising and identifying metabolic presentations in the paediatric Irish Traveller population. European Journal of Pediatrics, 182(1), 31-40. doi:10.1007/s00431-022-04697-0

Professor Patrick Guiry

Li, X., Brennan, T. B., Kingston, C., Ortin, Y., & Guiry, P. J. (2022). Design and Synthesis of Pyrrolidinyl Ferrocene-Containing Ligands and Their Application in Highly Enantioselective Rhodium-Catalyzed Olefin Hydrogenation. Molecules, 27(18). doi:10.3390/molecules27186078

Tighe, C., Owen, B., & Guiry, P. J. (2022). Asymmetric Synthesis of Benzothiophene-Containing Lipoxin A <inf>4</inf>Analogues with Lower-Chain Modifications. Synthesis (Germany), 55(8), 1274-1284. doi:10.1055/a-1992-7148

Brennan, T. B., Müller-Bunz, H., & Guiry, P. J. (2022). The Synthesis of Novel P, N -Ferrocenylpyrrolidine-Containing Ligands and Their Application in Pd-Catalyzed Allylic Alkylation - A Synthetic and Mechanistic Investigation. Synlett, 33(18), 1841-1846. doi:10.1055/s-0042-1752342

Owen, B., & Guiry, P. J. (2023). A general synthesis of aromatic and heteroaromatic lipoxin B<inf>4</inf> analogues. Organic and Biomolecular Chemistry. doi:10.1039/d3ob01076g

Cunningham, L., & Guiry, P. J. (2023). Design and Synthesis of a Ferrocene-Based Diol Library and Application in the Hetero-Diels-Alder Reaction. Chemistry - A European Journal, 29(6). doi:10.1002/chem.202203006

Kumar, S. V., & Guiry, P. J. (2023). Frontispiece: Catalytic Enantioselective [3+2] Cycloaddition of N-Metalated Azomethine Ylides. Chemistry – A European Journal, 29(28). doi:10.1002/chem.202382861

Kumar, S. V., & Guiry, P. J. (2023). Catalytic Enantioselective [3+2] Cycloaddition of N-Metalated Azomethine Ylides. Chemistry - A European Journal, 29(28). doi:10.1002/chem.202300296

Sivanandan, S. T., Owen, B., Guiry, P. J., & Ball, L. T. (2023). Synthesis of Highly Functionalized Bismacycles via Post-Transmetallation Modification of Arylboronic Acids. Journal of Organic Chemistry, 88(14), 9730-9736. doi:10.1021/acs.joc.3c00361

Dr Melinda Halasz

Rukhlenko, O. S., Halasz, M., Rauch, N., Zhernovkov, V., Prince, T., Wynne, K., et al. (2022). Control of cell state transitions. Nature, 609(7929), 975-985. doi:10.1038/s41586-022-05194-y

Howard, J., Wynne, K., Moldenhauer, E., Clarke, P., Maguire, C., Bollard, S., et al. (2022). A comparative analysis of extracellular vesicles (EVs) from human and feline plasma. Scientific Reports, 12(1). doi:10.1038/s41598-022-14211-z

D’Arcy, C., Bass, O., Junk, P., Sevrin, T., Oliviero, G., Wynne, K., et al. (2023). Disease–Gene Networks of Skin Pigmentation Disorders and Reconstruction of Protein–Protein Interaction Networks. Bioengineering, 10(1). doi:10.3390/bioengineering10010013

Professor Suzi Jarvis

Hardie, P., Darley, A., Langan, L., Lafferty, A., Jarvis, S., & Redmond, C. (2022). Interpersonal and communication skills development in general nursing preceptorship education and training programmes: A scoping review. Nurse Education in Practice, 65. doi:10.1016/j.nepr.2022.103482

Dr Rory Johnson

Esposito, R., Polidori, T., Meise, D. F., Pulido-Quetglas, C., Chouvardas, P., Forster, S., et al. (2022). Multi-hallmark long noncoding RNA maps reveal non-small cell lung cancer vulnerabilities. Cell Genomics, 2(9). doi:10.1016/j.xgen.2022.100171

Reyna, M. A., Haan, D., Paczkowska, M., Verbeke, L. P. C., Vazquez, M., Kahraman, A., et al. (2022). Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes (Nature Communications, (2020), 11, 1, (729), 10.1038/s41467-020-14367-0). Nature Communications, 13(1). doi:10.1038/s41467-022-32334-9

Zhang, Y., Chen, F., Fonseca, N. A., He, Y., Fujita, M., Nakagawa, H., et al. (2022). Author Correction: High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations (Nature Communications, (2020), 11, 1, (736), 10.1038/s41467-019-13885-w). Nature Communications, 13(1). doi:10.1038/s41467-022-32333-w

Grapotte, M., Saraswat, M., Bessière, C., Menichelli, C., Ramilowski, J. A., Severin, J., et al. (2022). Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (Nature Communications, (2021), 12, 1, (3297), 10.1038/s41467-021-23143-7). Nature Communications, 13(1). doi:10.1038/s41467-022-28758-y

Plaisance, I., Chouvardas, P., Sun, Y., Nemir, M., Aghagolzadeh, P., Aminfar, F., et al. (2022). Alternative splicing of a transposable element into the human long noncoding RNA CARMEN is a switch for cardiac precursor cell specification. Journal of Molecular and Cellular Cardiology, 173, S182. doi:10.1016/j.yjmcc.2022.08.344

Arnan, C., Ullrich, S., Pulido-Quetglas, C., Nurtdinov, R., Esteban, A., Blanco-Fernandez, J., et al. (2022). Paired guide RNA CRISPR-Cas9 screening for protein-coding genes and lncRNAs involved in transdifferentiation of human B-cells to macrophages. BMC Genomics, 23(1). doi:10.1186/s12864-022-08612-7

Rubanova, Y., Shi, R., Harrigan, C. F., Li, R., Wintersinger, J., Sahin, N., et al. (2022). Author Correction: Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig (Nature Communications, (2020), 11, 1, (731), 10.1038/s41467-020-14352-7). Nature Communications, 13(1). doi:10.1038/s41467-022-32336-7

Vancura, A., Gutierrez, A. H., Hennig, T., Pulido-Quetglas, C., Slack, F. J., Johnson, R., & Haefliger, S. (2022). Is Evolutionary Conservation a Useful Predictor for Cancer Long Noncoding RNAs? Insights from the Cancer LncRNA Census 3. Non-coding RNA, 8(6). doi:10.3390/ncrna8060082

Aghagolzadeh, P., Plaisance, I., Bernasconi, R., Sarre, A., Nemir, M., Quetglas, C. P., et al. (2022). Single-cell analysis of the long noncoding RNA transcriptome in cardiac fibroblasts identifies FIXER, a novel therapeutic target for fibrosis in the damaged heart. Journal of Molecular and Cellular Cardiology, 173, S39-S40. doi:10.1016/j.yjmcc.2022.08.079

Shuai, S., Abascal, F., Amin, S. B., Bader, G. D., Bandopadhayay, P., Barenboim, J., et al. (2022). Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower (Nature Communications, (2020), 11, 1, (734), 10.1038/s41467-019-13929-1). Nature Communications, 13(1). doi:10.1038/s41467-022-32343-8

Paczkowska, M., Barenboim, J., Sintupisut, N., Fox, N. S., Zhu, H., Abd-Rabbo, D., et al. (2022). Author Correction: Integrative pathway enrichment analysis of multivariate omics data (Nature Communications, (2020), 11, 1, (735), 10.1038/s41467-019-13983-9). Nature Communications, 13(1). doi:10.1038/s41467-022-32342-9

Cmero, M., Yuan, K., Ong, C. S., Schröder, J., Adams, D. J., Anur, P., et al. (2022). Author Correction: Inferring structural variant cancer cell fraction (Nature Communications, (2020), 11, 1, (730), 10.1038/s41467-020-14351-8). Nature Communications, 13(1). doi:10.1038/s41467-022-32338-5

Carlevaro-Fita, J., Lanzós, A., Feuerbach, L., Hong, C., Mas-Ponte, D., Pedersen, J. S., & Johnson, R. (2022). Erratum: Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis (Communications biology (2020) 3 1 (56)). Communications biology, 5(1), 1347. doi:10.1038/s42003-022-03769-z

Frankish, A., Carbonell-Sala, S., Diekhans, M., Jungreis, I., Loveland, J. E., Mudge, J. M., et al. (2023). GENCODE: reference annotation for the human and mouse genomes in 2023. Nucleic Acids Research, 51(D1), D942-D949. doi:10.1093/nar/gkac1071

Rheinbay, E., Nielsen, M. M., Abascal, F., Wala, J. A., Shapira, O., Tiao, G., et al. (2023). Erratum: Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes (Nature (2020) 578 7793 (102-111)). Nature, 614(7948), E40. doi:10.1038/s41586-022-05599-9

Aaltonen, L. A., Abascal, F., Abeshouse, A., Aburatani, H., Adams, D. J., Agrawal, N., et al. (2023). Author Correction: Pan-cancer analysis of whole genomes (Nature, (2020), 578, 7793, (82-93), 10.1038/s41586-020-1969-6). Nature, 614(7948), E39. doi:10.1038/s41586-022-05598-w

Plaisance, I., Chouvardas, P., Sun, Y., Nemir, M., Aghagolzadeh, P., Aminfar, F., et al. (2023). A transposable element into the human long noncoding RNA CARMEN is a switch for cardiac precursor cell specification. Cardiovascular Research, 119(6), 1361-1376. doi:10.1093/cvr/cvac191

Zapatka, M., Borozan, I., Brewer, D. S., Iskar, M., Grundhoff, A., Alawi, M., et al. (2023). Author Correction: The landscape of viral associations in human cancers (Nature Genetics, (2020), 52, 3, (320-330), 10.1038/s41588-019-0558-9). Nature Genetics, 55(6), 1077. doi:10.1038/s41588-023-01316-y

Mattick, J. S., Amaral, P. P., Carninci, P., Carpenter, S., Chang, H. Y., Chen, L. L., et al. (2023). Long non-coding RNAs: definitions, functions, challenges and recommendations. Nature Reviews Molecular Cell Biology, 24(6), 430-447. doi:10.1038/s41580-022-00566-8

Aghagolzadeh, P., Plaisance, I., Bernasconi, R., Treibel, T. A., Pulido Quetglas, C., Wyss, T., et al. (2023). Assessment of the Cardiac Noncoding Transcriptome by Single-Cell RNA Sequencing Identifies FIXER, a Conserved Profibrogenic Long Noncoding RNA. Circulation, 148(9), 778-797. doi:10.1161/CIRCULATIONAHA.122.062601

Professor Michael Keane

O'Callaghan, M., McCarthy, C., & Keane, M. P. (2022). Promising Idiopathic Pulmonary Fibrosis Therapeutics. Irish medical journal, 115(No9), 667.

Freitag-Wolf, S., Schupp, J. C., Frye, B. C., Fischer, A., Anwar, R., Kieszko, R., et al. (2023). Genetic and geographic influence on phenotypic variation in European sarcoidosis patients. Frontiers in Medicine, 10. doi:10.3389/fmed.2023.1218106

Duignan, J. A., Ryan, D. T., O'Riordan, B., O'Brien, A., Healy, G. M., O'Brien, C., et al. (2023). Combined autologous blood patch-immediate patient rollover does not reduce the pneumothorax or chest drain rate following CT-guided lung biopsy compared to immediate patient rollover alone. European Journal of Radiology, 160. doi:10.1016/j.ejrad.2023.110691

Peljto, A. L., Blumhagen, R. Z., Walts, A. D., Cardwell, J., Powers, J., Corte, T. J., et al. (2023). Idiopathic Pulmonary Fibrosis Is Associated with Common Genetic Variants and Limited Rare Variants. American journal of respiratory and critical care medicine, 207(9), 1194-1202. doi:10.1164/rccm.202207-1331OC

Professor Breandán Kennedy

Moran, A. L., Fehilly, J. D., Floss Jones, D., Collery, R., & Kennedy, B. N. (2022). Regulation of the rhythmic diversity of daily photoreceptor outer segment phagocytosis in vivo. FASEB Journal, 36(10). doi:10.1096/fj.202200990RR

Smith, A. J., Advani, J., Brock, D. C., Nellissery, J., Gumerson, J., Dong, L., et al. (2022). GATD3A, a mitochondrial deglycase with evolutionary origins from gammaproteobacteria, restricts the formation of advanced glycation end products. BMC Biology, 20(1). doi:10.1186/s12915-022-01267-6

Gómez Sánchez, A., Colucci, P., Moran, A., Moya López, A., Colligris, B., Álvarez, Y., & Kennedy, B. (2023). Systemic treatment with cigarette smoke extract affects zebrafish visual behaviour, intraocular vasculature morphology and outer segment phagocytosis. doi:10.12688/openreseurope.15491.1

Sundaramurthi, H., Tonelotto, V., Wynne, K., O'Connell, F., O’Reilly, E., Costa-Garcia, M., et al. (2023). Ergolide mediates anti-cancer effects on metastatic uveal melanoma cells and modulates their cellular and extracellular vesicle proteomes. doi:10.12688/openreseurope.15973.1

Colucci, P., Giannaccini, M., Baggiani, M., Kennedy, B. N., Dente, L., Raffa, V., & Gabellini, C. (2023). Neuroprotective Nanoparticles Targeting the Retina: A Polymeric Platform for Ocular Drug Delivery Applications. Pharmaceutics, 15(4). doi:10.3390/pharmaceutics15041096

Professor Boris Kholodenko

Rukhlenko, O. S., Halasz, M., Rauch, N., Zhernovkov, V., Prince, T., Wynne, K., et al. (2022). Control of cell state transitions. Nature, 609(7929), 975-985. doi:10.1038/s41586-022-05194-y

Imoto, H., Rauch, N., Neve, A. J., Khorsand, F., Kreileder, M., Alexopoulos, L. G., et al. (2023). A Combination of Conformation-Specific RAF Inhibitors Overcome Drug Resistance Brought about by RAF Overexpression. Biomolecules, 13(8). doi:10.3390/biom13081212

Professor Ulla Knaus

Englert, M., Aurbach, K., Becker, I. C., Gerber, A., Heib, T., Wackerbarth, L. M., et al. (2022). Impaired microtubule dynamics contribute to microthrombocytopenia in RhoB-deficient mice. Blood Advances, 6(17), 5184-5197. doi:10.1182/bloodadvances.2021006545

Mthunzi, L., Rowan, S. C., Kostyunina, D. S., Baugh, J. A., Knaus, U. G., & McLoughlin, P. (2023). Gremlin 1 is required for macrophage M2 polarization. American journal of physiology. Lung cellular and molecular physiology, 325(2), L270-L276. doi:10.1152/ajplung.00163.2023

Peñuelas-Haro, I., Espinosa-Sotelo, R., Crosas-Molist, E., Herranz-Itúrbide, M., Caballero-Díaz, D., Alay, A., et al. (2023). The NADPH oxidase NOX4 regulates redox and metabolic homeostasis preventing HCC progression. Hepatology, 78(2), 416-433. doi:10.1002/hep.32702

Professor Walter Kolch

Rukhlenko, O. S., Halasz, M., Rauch, N., Zhernovkov, V., Prince, T., Wynne, K., et al. (2022). Control of cell state transitions. Nature, 609(7929), 975-985. doi:10.1038/s41586-022-05194-y

Romano, D., García-Gutiérrez, L., Aboud, N., Duffy, D. J., Flaherty, K. T., Frederick, D. T., et al. (2022). Proteasomal down-regulation of the proapoptotic MST2 pathway contributes to BRAF inhibitor resistance in melanoma. Life Science Alliance, 5(10). doi:10.26508/lsa.202201445

Cowzer, D., Zameer, M., Conroy, M., Kolch, W., & Duffy, A. G. (2022). Targeting KRAS in Pancreatic Cancer. Journal of Personalized Medicine, 12(11). doi:10.3390/jpm12111870

Hambly, R., Gatault, S., Smith, C. M., Iglesias-Martinez, L. F., Kearns, S., Rea, H., et al. (2023). B-cell and complement signature in severe hidradenitis suppurativa that does not respond to adalimumab. British Journal of Dermatology, 188(1), 52-63. doi:10.1093/bjd/ljac007

O’Reilly, M., Linehan, A., Krstic, A., Kolch, W., Sheahan, K., Winter, D. C., & Mc Dermott, R. (2023). Oncotherapeutic Strategies in Early Onset Colorectal Cancer. Cancers, 15(2). doi:10.3390/cancers15020552

Kolch, W., Berta, D., & Rosta, E. (2023). Dynamic regulation of RAS and RAS signaling. Biochemical Journal, 480(1), 1-23. doi:10.1042/BCJ20220234

Smith, C. M., Hambly, R., Gatault, S., Iglesias-Martinez, L. F., Kearns, S., Rea, H., et al. (2023). B-cell-derived transforming growth factor-ß may drive the activation of inflammatory macrophages and contribute to scarring in hidradenitis suppurativa. British Journal of Dermatology, 188(2), 290-292. doi:10.1093/bjd/ljac048

Hastings, J. F., Latham, S. L., Kamili, A., Wheatley, M. S., Han, J. Z. R., Wong-Erasmus, M., et al. (2023). Memory of stochastic single-cell apoptotic signaling promotes chemoresistance in neuroblastoma. Science Advances, 9(9). doi:10.1126/sciadv.abp8314

Nabhan, M., Egan, D., Kreileder, M., Zhernovkov, V., Timosenko, E., Slidel, T., et al. (2023). Deciphering the tumour immune microenvironment cell by cell. Immuno-Oncology and Technology, 18. doi:10.1016/j.iotech.2023.100383

Liu, Z., Krstic, A., Neve, A., Casalou, C., Rauch, N., Wynne, K., et al. (2023). Kinase Suppressor of RAS 1 (KSR1) Maintains the Transformed Phenotype of BRAFV600E Mutant Human Melanoma Cells. International Journal of Molecular Sciences, 24(14). doi:10.3390/ijms241411821

Nolan, A., Raso, C., Kolch, W., Kriegsheim, A. V., Wynne, K., & Matallanas, D. (2023). Proteomic Mapping of the Interactome of KRAS Mutants Identifies New Features of RAS Signalling Networks and the Mechanism of Action of Sotorasib. Cancers, 15(16). doi:10.3390/cancers15164141

Egan, D., Kreileder, M., Nabhan, M., Iglesias-Martinez, L. F., Dovedi, S. J., Valge-Archer, V., et al. (2023). Small Gene Networks Delineate Immune Cell States and Characterize Immunotherapy Response in Melanoma. Cancer Immunology Research, 11(8), 1125-1136. doi:10.1158/2326-6066.CIR-22-0563

Dr Arun Kumar

Kumar, A. H. S. (2022). Comparative Pharmacology of Direct Oral Anticoagulants and Vitamin K Antagonist. Biology, Engineering, Medicine and Science Reports, 8(2), 16-23. doi:10.5530/bems.8.2.5

Ahmed KK, M., & Kumar, A. H. S. (2022). Novel Referencing Style Based on DOI® for Digital Publications. Biology, Engineering, Medicine and Science Reports, 8(2), 33-34. doi:10.5530/bems.8.2.8

Kumar, A. H. S. (2022). Pharmacological Targets of Asundexian Relevant to its Therapeutic Efficacy in Treating Cardiovascular Diseases. Biology, Engineering, Medicine and Science Reports, 8(2), 24-27. doi:10.5530/bems.8.2.6

Kumar, A. H. S. (2022). PTPRC, KDM5C, GABBR1 and HDAC1 are the Major Targets of Valproic Acid in Regulation of its Anticonvulsant Pharmacological Effects. Biology, Engineering, Medicine and Science Reports, 8(2), 28-32. doi:10.5530/bems.8.2.7

Chojnacka, P., & HS Kumar, A. (2023). Influence of Ambient Day Light Variations and Age on the Iris-pupillary Area Ratio in Beef Cattle. Biology, Engineering, Medicine and Science Reports, 9(1), 17-19. doi:10.5530/bems.9.1.3

HS Kumar, A. (2023). Analysis of ChatGPT Tool to Assess the Potential of its Utility for Academic Writing in Biomedical Domain. Biology, Engineering, Medicine and Science Reports, 9(1), 24-30. doi:10.5530/bems.9.1.5

Kumar, A. H. S. (2023). Contamination of Food by Nitrosamines and the Associated Public Health Risks. Biology, Engineering, Medicine and Science Reports, 9(2), 40-42. doi:10.5530/bems.9.2.8

Kumar, A. H. S. (2023). A Brief Report on Utility of N-terminal pro-B-type Natriuretic Peptide (NT-proBNP) in Screening Patients at Risk of Atrial Fibrillation and Stroke. Biology, Engineering, Medicine and Science Reports, 9(2), 36-39. doi:10.5530/bems.9.2.7

Kumar, A. H. S. (2023). Inaccurate Labelling of Melatonin Gummies: A Concerning Trend. Biology, Engineering, Medicine and Science Reports, 9(2), 45-47. doi:10.5530/bems.9.2.10

Kumar, A. H. S. (2023). Unveiling the Mysteries of Gut CrAssphages: A Step Forward in Understanding the Human Virobiome. Biology, Engineering, Medicine and Science Reports, 9(2), 43-44. doi:10.5530/bems.9.2.9

Dr Stephen Lalor

Mannion, J. M., McLoughlin, R. M., & Lalor, S. J. (2023). The Airway Microbiome-IL-17 Axis: a Critical Regulator of Chronic Inflammatory Disease. Clinical Reviews in Allergy and Immunology, 64(2), 161-178. doi:10.1007/s12016-022-08928-y

Curham, L. M., Mannion, J. M., Daly, C. M., Wilk, M. M., Borkner, L., Lalor, S. J., et al. (2023). Bystander activation of Bordetella pertussis-induced nasal tissue-resident memory CD4 T cells confers heterologous immunity to Klebsiella pneumoniae. European Journal of Immunology, 53(5). doi:10.1002/eji.202250247

Mannion, J. M., Segal, B. M., McLoughlin, R. M., & Lalor, S. J. (2023). Respiratory tract Moraxella catarrhalis and Klebsiella pneumoniae can promote pathogenicity of myelin-reactive Th17 cells. Mucosal Immunology, 16(4), 399-407. doi:10.1016/j.mucimm.2023.04.003

Professor Carel Le Roux

Farrell, E., Hollmann, E., Roux, C. L., Nadglowski, J., & McGillicuddy, D. (2022). At home and at risk: The experiences of Irish adults living with obesity during the COVID-19 pandemic. eClinicalMedicine, 51. doi:10.1016/j.eclinm.2022.101568

Sridhar, A., Khan, D., Abdelaal, M., Elliott, J. A., Naughton, V., Flatt, P. R., et al. (2022). Differential effects of RYGB surgery and best medical treatment for obesity-diabetes on intestinal and islet adaptations in obesediabetic ZDSD rats. PLoS ONE, 17(9 September). doi:10.1371/journal.pone.0274788

Petre, T., Bauman, A., Sumithran, P., Sacks, G., Lobstein, T., Le Roux, C., et al. (2022). A better understanding of the science and reality of obesity is urgently needed. Public Health Research and Practice, 32(3). doi:10.17061/phrp3232220

Perreault, L., Davies, M., Frias, J. P., Laursen, P. N., Lingvay, I., Machineni, S., et al. (2022). Changes in Glucose Metabolism and Glycemic Status With Once-Weekly Subcutaneous Semaglutide 2.4 mg Among Participants With Prediabetes in the STEP Program. Diabetes Care, 45(10), 2396-2405. doi:10.2337/dc21-1785

Cosson, E., Perreault, L., Davies, M., Frias, J., Laursen, P., Lingvay, I., et al. (2022). Sémaglutide 2,4 mg administré de manière hebdomadaire améliore le métabolisme du glucose et le prédiabète chez des adultes en situation de surpoids ou d’obésité dans l’étude clinique STEP 1. Annales d'Endocrinologie, 83(5), 371. doi:10.1016/j.ando.2022.07.247

Cohen, R. V., Pereira, T. V., Aboud, C. M., Zanata Petry, T. B., Lopes Correa, J. L., Schiavon, C. A., et al. (2022). Gastric bypass versus best medical treatment for diabetic kidney disease: 5 years follow up of a single-centre open label randomised controlled trial. eClinicalMedicine, 53. doi:10.1016/j.eclinm.2022.101725

Chapelsky, S., Perreault, L., Davies, M., Frias, J. P., Norkjaer Laursen, P., Lingvay, I., et al. (2022). Once-Weekly Semaglutide 2.4 mg Improved Glucose Metabolism and Prediabetes in Adults With Overweight/Obesity in the STEP 1 Trial. Canadian Journal of Diabetes, 46(7), S4-S5. doi:10.1016/j.jcjd.2022.09.012

Lopez-Jimenez, F., Almahmeed, W., Bays, H., Cuevas, A., Di Angelantonio, E., le Roux, C. W., et al. (2022). Obesity and cardiovascular disease: mechanistic insights and management strategies. A joint position paper by the World Heart Federation and World Obesity Federation. European Journal of Preventive Cardiology, 29(17), 2218-2237. doi:10.1093/eurjpc/zwac187

Livingstone, B. E. M., Redpath, T., Naseer, F., Boyd, A., Martin, M., Finlayson, G., et al. (2022). Food Intake Following Gastric Bypass Surgery: Patients Eat Less but Do Not Eat Differently. Journal of Nutrition, 152(11), 2319-2332. doi:10.1093/jn/nxac164

De Lemos, J. A., le Roux, C. W., Mao, H., Ahmad, N. N., zhang, S., Bunck, M., & Stefanski, A. (2022). Abstract 10370: Effects of Tirzepatide on 24-Hour Ambulatory Blood Pressure and Heart Rate in Adults With Obesity - Results From the SURMOUNT-1 Ambulatory Blood Pressure Monitoring Sub-Study. Circulation, 146(Suppl_1). doi:10.1161/circ.146.suppl_1.10370

Breen, C., O'connell, J., Geoghegan, J., O'shea, D., Birney, S., Tully, L., et al. (2022). Obesity in Adults: A 2022 Adapted Clinical Practice Guideline for Ireland. Obesity Facts, 15(6), 736-752. doi:10.1159/000527131

Papamargaritis, D., le Roux, C. W., Holst, J. J., & Davies, M. J. (2022). New therapies for obesity.. Cardiovascular research, cvac176. doi:10.1093/cvr/cvac176

Friedman, A. N., Schauer, P. R., Beddhu, S., Kramer, H., le Roux, C. W., Purnell, J. Q., et al. (2022). Obstacles and opportunities in managing coexisting obesity and CKD: Report of a scientific workshop cosponsored by the National Kidney Foundation and The Obesity Society. Obesity, 30(12), 2340-2350. doi:10.1002/oby.23599

Perugini, J., Di Mercurio, E., Giuliani, A., Sabbatinelli, J., Bonfigli, A. R., Tortato, E., et al. (2022). Ciliary neurotrophic factor is increased in the plasma of patients with obesity and its levels correlate with diabetes and inflammation indices. Scientific Reports, 12(1). doi:10.1038/s41598-022-11942-x

Taieb, A. B., Roberts, E., Luckevich, M., Larsen, S., le Roux, C. W., de Freitas, P. G., & Wolfert, D. (2022). Understanding the risk of developing weight-related complications associated with different body mass index categories: a systematic review. Diabetology and Metabolic Syndrome, 14(1). doi:10.1186/s13098-022-00952-4

Friedman, A. N., Schauer, P. R., Beddhu, S., Kramer, H., le Roux, C. W., Purnell, J. Q., et al. (2022). Obstacles and Opportunities in Managing Coexisting Obesity and CKD: Report of a Scientific Workshop Cosponsored by the National Kidney Foundation and The Obesity Society. American Journal of Kidney Diseases, 80(6), 783-793. doi:10.1053/j.ajkd.2022.06.007

Angelini, G., Castagneto-Gissey, L., Salinari, S., Bertuzzi, A., Anello, D., Pradhan, M., et al. (2022). Upper gut heat shock proteins HSP70 and GRP78 promote insulin resistance, hyperglycemia, and non-alcoholic steatohepatitis. Nature Communications, 13(1). doi:10.1038/s41467-022-35310-5

Smart, K. M., Hinwood, N. S., Dunlevy, C., Doody, C. M., Blake, C., Fullen, B. M., et al. (2022). Multidimensional pain profiling in people living with obesity and attending weight management services: a protocol for a longitudinal cohort study. BMJ open, 12(12), e065188. doi:10.1136/bmjopen-2022-065188

Abdul Wahab, R., Cohen, R. V., & le Roux, C. W. (2023). Recent advances in the treatment of patients with obesity and chronic kidney disease. Annals of Medicine, 55(1). doi:10.1080/07853890.2023.2203517

Coelho, C., Dobbie, L. J., Crane, J., Douiri, A., Learoyd, A. E., Okolo, O., et al. (2023). Laparoscopic adjustable gastric banding with liraglutide in adults with obesity and type 2 diabetes (GLIDE): a pilot randomised placebo controlled trial. International Journal of Obesity. doi:10.1038/s41366-023-01368-4

Alabduljabbar, K., Bonanos, E., Miras, A. D., & le Roux, C. W. (2023). Mechanisms of Action of Bariatric Surgery on Body Weight Regulation. Gastroenterology Clinics of North America. doi:10.1016/j.gtc.2023.08.002

le Roux, C. W., Zhang, S., Aronne, L. J., Kushner, R. F., Chao, A. M., Machineni, S., et al. (2023). Tirzepatide for the treatment of obesity: Rationale and design of the SURMOUNT clinical development program. Obesity, 31(1), 96-110. doi:10.1002/oby.23612

Angelini, G., Panunzi, S., Castagneto-Gissey, L., Pellicanò, F., De Gaetano, A., Pompili, M., et al. (2023). Accurate liquid biopsy for the diagnosis of non-alcoholic steatohepatitis and liver fibrosis. Gut, 72(2), 392-403. doi:10.1136/gutjnl-2022-327498

Tahrani, A. A., Panova-Noeva, M., Schloot, N. C., Hennige, A. M., Soderberg, J., Nadglowski, J., et al. (2023). Stratification of obesity phenotypes to optimize future therapy (SOPHIA). Expert Review of Gastroenterology and Hepatology. doi:10.1080/17474124.2023.2264783

Llewellyn, D. C., Logan Ellis, H., Aylwin, S. J. B., Oštarijaš, E., Green, S., Sheridan, W., et al. (2023). The efficacy of GLP-1RAs for the management of postprandial hypoglycemia following bariatric surgery: a systematic review. Obesity, 31(1), 20-30. doi:10.1002/oby.23600

Craig, H. C., Doran, Z. M., & le Roux, C. W. (2023). The Concept of Healthy Behaviours in Obesity May Have Unintended Consequences. Nutrients, 15(1). doi:10.3390/nu15010012

Alabduljabbar, K., Alsaqaaby, M., Neff, K. J., Crotty, M., & le Roux, C. W. (2023). Weight loss response in patients with obesity treated with injectable semaglutide in a real-world setting. Endocrine. doi:10.1007/s12020-023-03534-0

Jamialahamdi, T., Mirhadi, E., Atkin, S. L., le Roux, C. W., Kroh, M., Almahmeed, W., et al. (2023). Effect of Bariatric Surgery on Serum Amyloid A Protein: a Systematic Review and Meta-analysis. Obesity Surgery. doi:10.1007/s11695-023-06830-w

Grannell, A., Al-Najim, W., & le Roux, C. (2023). Long-term weight outcomes in patients treated with liraglutide 3.0 mg in real-world clinical practice. Clinical Obesity. doi:10.1111/cob.12622

Pontiroli, A. E., Centofanti, L., Le Roux, C. W., Magnani, S., Tagliabue, E., & Folli, F. (2023). Effect of Prolonged and Substantial Weight Loss on Incident Atrial Fibrillation: A Systematic Review and Meta-Analysis. Nutrients, 15(4). doi:10.3390/nu15040940

Chong, B., Jayabaskaran, J., Kong, G., Chan, Y. H., Chin, Y. H., Goh, R., et al. (2023). Trends and predictions of malnutrition and obesity in 204 countries and territories: an analysis of the Global Burden of Disease Study 2019. eClinicalMedicine, 57. doi:10.1016/j.eclinm.2023.101850

Al-Ozairi, E., Irshad, M., Taghadom, E., Sojan, L., Al Kandari, J., Alroudhan, D., & le Roux, C. W. (2023). Glucagon-like peptide-1 agonists combined with sodium-glucose cotransporter-2 inhibitors reduce weight in type 1 diabetes. Obesity, 31(3), 716-723. doi:10.1002/oby.23677

Alabduljabbar, K., Al-Najim, W., & le Roux, C. W. (2023). Food preferences after bariatric surgery: a review update. Internal and Emergency Medicine, 18(2), 351-358. doi:10.1007/s11739-022-03157-9

Rubino, F., Batterham, R. L., Koch, M., Mingrone, G., le Roux, C. W., Farooqi, I. S., et al. (2023). Lancet Diabetes & Endocrinology Commission on the Definition and Diagnosis of Clinical Obesity. The Lancet Diabetes and Endocrinology, 11(4), 226-228. doi:10.1016/S2213-8587(23)00058-X

Alsaqaaby, M. S., & le Roux, C. W. (2023). Weight loss to disrupt type 2 diabetes. Diabetology International, 14(3), 217-223. doi:10.1007/s13340-023-00626-0

Jepsen, C. H., Bowman-Busato, J., Allvin, T., Arthurs, N., Goossens, G. H., Govers, E., et al. (2023). Achieving consensus on the language of obesity: a modified Delphi study. eClinicalMedicine, 62. doi:10.1016/j.eclinm.2023.102061

Lingvay, I., Sumithran, P., le Roux, C. W., & Cohen, R. V. (2023). There is no magic bullet for obesity. The Lancet Diabetes and Endocrinology, 11(8), 541. doi:10.1016/S2213-8587(23)00191-2

Garvey, W. T., Frias, J. P., Jastreboff, A. M., le Roux, C. W., Sattar, N., Aizenberg, D., et al. (2023). Tirzepatide once weekly for the treatment of obesity in people with type 2 diabetes (SURMOUNT-2): a double-blind, randomised, multicentre, placebo-controlled, phase 3 trial. The Lancet, 402(10402), 613-626. doi:10.1016/S0140-6736(23)01200-X

Professor Gil Lee

Spencer, N. D., & Jarvis, S. P. (2023). Scanning probe microscopies. Unknown Journal, 1467-1515.

Feely, N., Wdowicz, A., Chevalier, A., Wang, Y., Li, P., Rollo, F., & Lee, G. U. (2023). Targeting Mucin Protein Enables Rapid and Efficient Ovarian Cancer Cell Capture: Role of Nanoparticle Properties in Efficient Capture and Culture. Small, 19(18). doi:10.1002/smll.202207154

Professor Patrick Lonergan

Martínez-Moro, Á., González-Brusi, L., Lamas-Toranzo, I., O'Callaghan, E., Esteve-Codina, A., Lonergan, P., & Bermejo-Álvarez, P. (2022). RNA-sequencing reveals genes linked with oocyte developmental potential in bovine cumulus cells. Molecular Reproduction and Development, 89(9), 399-412. doi:10.1002/mrd.23631

Donnellan, E. M., Perrier, J. P., Keogh, K., Štiavnická, M., Collins, C. M., Dunleavy, E. M., et al. (2022). Identification of differentially expressed mRNAs and miRNAs in spermatozoa of bulls of varying fertility. Frontiers in Veterinary Science, 9. doi:10.3389/fvets.2022.993561

Rabaglino, M. B., Le Danvic, C., Schibler, L., Kupisiewicz, K., Perrier, J. P., O'Meara, C. M., et al. (2022). Identification of sperm proteins as biomarkers of field fertility in Holstein-Friesian bulls used for artificial insemination. Journal of Dairy Science, 105(12), 10033-10046. doi:10.3168/jds.2022-22273

Abril-Parreño, L., Carthy, T. R., Lonergan, P., Kenny, D. A., & Fair, S. (2022). Genome-wide association study of cryopreserved semen quality traits in Holstein-Friesian bulls. Cryobiology, 109, 27. doi:10.1016/j.cryobiol.2022.11.085

Štiavnická, M., Chaulot-Talmon, A., Perrier, J. P., Hošek, P., Kenny, D. A., Lonergan, P., et al. (2022). Sperm DNA methylation patterns at discrete CpGs and genes involved in embryonic development are related to bull fertility. BMC Genomics, 23(1). doi:10.1186/s12864-022-08614-5

Rabaglino, M. B., Sánchez, J. M., Crowe, A. D., McDonald, M., O’Callaghan, E., Moore, S. G., . . . Lonergan, P. (n.d.). 231 Effect of circulating progesterone concentration on the day of embryo transfer on fetal development and calf birthweight. Reproduction, Fertility and Development, 35(2), 244-245. doi:10.1071/rdv35n2ab231

Sánchez, J. M., O’Callaghan, E., Stiavnicka, M., McDonald, M., O’Meara, C., Eivers, B., . . . Lonergan, P. (n.d.). 168 An intronic variant that activates cryptic splicing of the adenylate kinase 9 gene causes extreme subfertility in bulls. Reproduction, Fertility and Development, 35(2), 211-212. doi:10.1071/rdv35n2ab168

Rabaglino, M. B., Forde, N., Besenfelder, U., Havlicek, V., Blum, H., Graf, A., . . . Lonergan, P. (n.d.). 90 Influence of the maternal environment during the period of embryonic genome activation on the Day-4 embryo transcriptome. Reproduction, Fertility and Development, 35(2), 171. doi:10.1071/rdv35n2ab90

Crowe, A. D., Rabaglino, M. B., Sanchez, J. M., Moore, S. G., McDonald, M., Lonergan, P., & Butler, S. T. (n.d.). 134 Comparison of the effect of artificial insemination and. Reproduction, Fertility and Development, 35(2), 195. doi:10.1071/rdv35n2ab134

Štiavnická, M., Hošek, P., Abril-Parreño, L., Kenny, D. A., Lonergan, P., & Fair, S. (2023). Membrane remodulation and hyperactivation are impaired in frozen-thawed sperm of low-fertility bulls. Theriogenology, 195, 115-121. doi:10.1016/j.theriogenology.2022.10.021

Rabaglino, M. B., Salilew-Wondim, D., Zolini, A., Tesfaye, D., Hoelker, M., Lonergan, P., & Hansen, P. J. (2023). Machine-learning methods applied to integrated transcriptomic data from bovine blastocysts and elongating conceptuses to identify genes predictive of embryonic competence. FASEB Journal, 37(3). doi:10.1096/fj.202201977R

Rabaglino, M. B., Sánchez, J. M., Mc Donald, M., Crowe, M. A., O'Callaghan, E., & Lonergan, P. (2023). Transfer of bovine embryos into a uterus primed with high progesterone concentrations positively impacts fetal development at 42 days of gestation. Theriogenology, 200, 25-32. doi:10.1016/j.theriogenology.2023.01.020

Butler, S. T., Crowe, A. D., Moore, S. G., & Lonergan, P. (2023). Review: Use of assisted reproduction in seasonal-calving dairy herds. Animal, 17. doi:10.1016/j.animal.2023.100775

Abril-Parreño, L., Carthy, T. R., Keogh, K., Štiavnická, M., O'Meara, C., Lonergan, P., et al. (2023). Genome-wide association study reveals candidate markers related to field fertility and semen quality traits in Holstein-Friesian bulls. Animal, 17(6). doi:10.1016/j.animal.2023.100841

Rabaglino, M. B., Forde, N., Besenfelder, U., Havlicek, V., Blum, H., Graf, A., et al. (2023). Maternal metabolic status and in-vitro culture conditions during embryonic genome activation deregulate the expression of energy-related genes in the bovine 16-cells embryo. PLoS ONE, 18(8 August). doi:10.1371/journal.pone.0290689

Moore, S. G., Feehily, C., Doyle, R. C., Buckley, F., Lonergan, P., Cotter, P. D., & Butler, S. T. (2023). Associations between the postpartum uterine and vaginal microbiota and the subsequent development of purulent vaginal discharge varies with dairy cow breed and parity.. Journal of dairy science, S0022-0302(23)00449-6. doi:10.3168/jds.2022-22720

Canadas, E. R., Herlihy, M. M., Kenneally, J., Kearney, F., Lonergan, P., & Butler, S. T. (2023). Postpartum vaginal discharge score is associated with genetic traits, postpartum fertility phenotypes, metabolic status and overall reproductive performance in seasonal-calving pasture-based dairy cows.. Journal of dairy science, S0022-0302(23)00498-8. doi:10.3168/jds.2023-23324

Professor David MacHugh

Han, H., McGivney, B. A., Allen, L., Bai, D., Corduff, L. R., Davaakhuu, G., et al. (2022). Common protein-coding variants influence the racing phenotype in galloping racehorse breeds. Communications Biology, 5(1). doi:10.1038/s42003-022-04206-x

Kelly, P., McHugo, G., Scaife, C., Peters, S., Lynn Stevenson, M., McKay, J., et al. (2023). Unveiling the Role of Endoplasmic Reticulum Stress Pathways in Canine Demodicosis. doi:10.1101/2023.08.11.552979

Hill, E. W., McGivney, B. A., & MacHugh, D. E. (2023). Inbreeding depression and durability in the North American Thoroughbred horse. Animal Genetics, 54(3), 408-411. doi:10.1111/age.13309

Holtby, A. R., Hall, T. J., McGivney, B. A., Han, H., Murphy, K. J., MacHugh, D. E., et al. (2023). Integrative genomics analysis highlights functionally relevant genes for equine behaviour. Animal Genetics, 54(4), 457-469. doi:10.1111/age.13320

Professor Patricia Maguire

Rohlfing, A. K., Kolb, K., Sigle, M., Ziegler, M., Bild, A., Münzer, P., et al. (2022). ACKR3 regulates platelet activation and ischemia-reperfusion tissue injury. Nature Communications, 13(1). doi:10.1038/s41467-022-29341-1

O’Reilly, D., Murphy, C. A., Moore, C. M., Ní Áinle, F., Gormley, I. C., Morrell, C. N., et al. (2023). Markers of platelet activation foR identification of late onset sEpsis in infaNTs: PARENT study protocol. Pediatric Research. doi:10.1038/s41390-023-02812-x

Contursi, A., Fullone, R., Szklanna-Koszalinska, P., Marcone, S., Lanuti, P., Taus, F., et al. (2023). Tumor-Educated Platelet Extracellular Vesicles: Proteomic Profiling and Crosstalk with Colorectal Cancer Cells. Cancers, 15(2). doi:10.3390/cancers15020350

Weiss, L., MacLeod, H., Comer, S. P., Cullivan, S., Szklanna, P. B., Ní Áinle, F., et al. (2023). An optimized protocol to isolate quiescent washed platelets from human whole blood and generate platelet releasate under clinical conditions. STAR Protocols, 4(2). doi:10.1016/j.xpro.2023.102150

Professor Fionnuala McAuliffe

Jacob, C. M., Inskip, H. M., Lawrence, W., McGrath, C., McAuliffe, F. M., Killeen, S. L., et al. (2022). Acceptability of the FIGO Nutrition Checklist in Preconception and Early Pregnancy to Assess Nutritional Status and Prevent Excess Gestational Weight Gain: A Study of Women and Healthcare Practitioners in the UK. Nutrients, 14(17). doi:10.3390/nu14173623

Keating, N., Coveney, C., McAuliffe, F. M., & Higgins, M. F. (2022). Aerobic or Resistance Exercise for Improved Glycaemic Control and Pregnancy Outcomes in Women with Gestational Diabetes Mellitus: A Systematic Review. International Journal of Environmental Research and Public Health, 19(17). doi:10.3390/ijerph191710791

Aubert, A. M., Chen, L. W., Shivappa, N., Cooper, C., Crozier, S. R., Duijts, L., et al. (2022). Predictors of maternal dietary quality and dietary inflammation during pregnancy: An individual participant data meta-analysis of seven European cohorts from the ALPHABET consortium. Clinical Nutrition, 41(9), 1991-2002. doi:10.1016/j.clnu.2022.06.042

Watson, D., Jacob, C. M., Giles, G., McAuliffe, F. M., Godfrey, K., & Hanson, M. (2022). A scoping review of nutritional interventions and policy guidelines in the interconception period for prevention of noncommunicable diseases. Reproductive, Female and Child Health, 1(1), 18-41. doi:10.1002/rfc2.8

Brennan, K., Craven, S., Cheung, M., Kane, D., Noone, E., O'Callaghan, J., et al. (2022). Cytosolic dsRNA improves neonatal innate immune responses to adjuvants in use in pediatric vaccines. Journal of Leukocyte Biology, 112(3), 523-537. doi:10.1002/JLB.5A0521-242R

Du, Y., Antoniadi, A. M., McNestry, C., McAuliffe, F. M., & Mooney, C. (2022). The Role of XAI in Advice-Taking from a Clinical Decision Support System: A Comparative User Study of Feature Contribution-Based and Example-Based Explanations. Applied Sciences (Switzerland), 12(20). doi:10.3390/app122010323

Keating, N. E., Dempsey, B., Corcoran, S., McAuliffe, F. M., Lalor, J., & Higgins, M. F. (2022). Women’s experience of pregnancy and birth during the COVID-19 pandemic: a qualitative study. Irish Journal of Medical Science, 191(5), 2177-2184. doi:10.1007/s11845-021-02862-2

Gorman, Á., Sundanum, S., Moore, L., O'Brien, C., McAuliffe, F., & Veale, D. J. (2022). Pregnancy outcomes in women with psoriatic arthritis: comment on the article by Remaeus et al. Arthritis and Rheumatology, 74(10), 1720. doi:10.1002/art.42253

Killeen, S. L., Byrne, D. F., Geraghty, A., Yelverton, C., van Sinderen, D., Cotter, P. D., et al. (2022). Recruiting and Engaging Women of Reproductive Age with Obesity: Insights from A Mixed-Methods Study within A Trial. International Journal of Environmental Research and Public Health. doi:10.3390/ijerph192113832

Philippe, K., Perrotta, C., O'Donnell, A., McAuliffe, F. M., & Phillips, C. M. (2022). Why do preconception and pregnancy lifestyle interventions demonstrate limited success in preventing overweight and obesity in children? A scoping review protocol. PLoS ONE, 17(11 November). doi:10.1371/journal.pone.0276491

Mulcahy, C., & McAuliffe, F. M. (2022). Routine Doppler ultrasound in twin pregnancy. Best Practice and Research: Clinical Obstetrics and Gynaecology, 84, 43-54. doi:10.1016/j.bpobgyn.2022.08.002

Kane, D., Ryan, G., Mangina, E., & McAuliffe, F. M. (2022). A randomized control trial of a virtual reality learning environment in obstetric medical student teaching. International Journal of Medical Informatics, 168. doi:10.1016/j.ijmedinf.2022.104899

Velasco, E. R., Pedersen, H. S., Skinner, T., O'Reilly, S. L., Geraghty, A. A., Zahoor, F., et al. (2022). Analysis of Patient Cues in Asynchronous Health Interactions: Pilot Study Combining Empathy Appraisal and Systemic Functional Linguistics. JMIR Formative Research, 6(12). doi:10.2196/40058

Delahunt, A., Conway, M. C., O’Brien, E. C., Geraghty, A. A., O’Keeffe, L. M., O’Reilly, S. L., et al. (2022). Ecological factors and childhood eating behaviours at 5 years of age: findings from the ROLO longitudinal birth cohort study. BMC Pediatrics, 22(1). doi:10.1186/s12887-022-03423-x

Bartels, H. C., Kennelly, M. A., Killeen, S. L., Lindsay, K. L., Crowley, R. K., & McAuliffe, F. M. (2022). An mHealth-Supported antenatal lifestyle intervention may be associated with improved maternal sleep in pregnancy: Secondary analysis from the PEARS trial. BJOG: An International Journal of Obstetrics and Gynaecology, 129(13), 2195-2202. doi:10.1111/1471-0528.17267

Ryan, G., Callaghan, S., Rafferty, A., Murphy, J., Higgins, M., Barry, T., et al. (2022). Virtual reality in midwifery education: A mixed methods study to assess learning and understanding. Nurse Education Today, 119. doi:10.1016/j.nedt.2022.105573

Petch, S., McAuliffe, F., O'Reilly, S., Murphy, C., Coulter-Smith, S., de Campos, D. A., et al. (2022). Folic acid fortification of flour to prevent neural tube defects in Europe – A position statement by the European Board and college of obstetrics and gynaecology (EBCOG). European Journal of Obstetrics and Gynecology and Reproductive Biology, 279, 109-111. doi:10.1016/j.ejogrb.2022.10.010

Delahunt, A., Conway, M. C., Callaghan, S. L., O'Brien, E. C., Geraghty, A. A., O'Reilly, S. L., et al. (2022). Maternal dietary quality during pregnancy and child appetitive traits at 5-years-old: Findings from the ROLO longitudinal birth cohort study. Appetite, 179. doi:10.1016/j.appet.2022.106291

Du, Y., Rafferty, A. R., McAuliffe, F. M., Wei, L., & Mooney, C. (2022). An explainable machine learning-based clinical decision support system for prediction of gestational diabetes mellitus. Scientific Reports, 12(1). doi:10.1038/s41598-022-05112-2

Sheikh, J., Allotey, J., Kew, T., Fernández-Félix, B. M., Zamora, J., Khalil, A., et al. (2022). Effects of race and ethnicity on perinatal outcomes in high-income and upper-middle-income countries: an individual participant data meta-analysis of 2 198 655 pregnancies. The Lancet, 400(10368), 2049-2062. doi:10.1016/S0140-6736(22)01191-6

Doherty, J., Moore, R. L., Kivlehan, C., Byrne, D. F., Yelverton, C. A., Twomey, P. J., et al. (2022). Trends in Faecal Calprotectin Levels During Pregnancy in Non-IBD Patients.. Irish medical journal, 115(No.10), 692.

Maxwell, C. V., Shirley, R., O'Higgins, A. C., Rosser, M. L., O'Brien, P., Hod, M., et al. (2023). Management of obesity across women's life course: FIGO Best Practice Advice. International Journal of Gynecology and Obstetrics, 160(S1), 35-49. doi:10.1002/ijgo.14549

Bartels, H. C., O'Keeffe, L. M., Yelverton, C. A., O'Neill, K. N., Geraghty, A. A., O'Brien, E. C., et al. (2023). Associations between maternal metabolic parameters during pregnancy and fetal and child growth trajectories from 20 weeks' gestation to 5 years of age: Secondary analysis from the ROLO longitudinal birth cohort study. Pediatric Obesity, 18(1). doi:10.1111/ijpo.12976

Lee, S. A., Corbett, G. A., & McAuliffe, F. M. (2023). Obstetric care for environmental migrants. Irish Journal of Medical Science. doi:10.1007/s11845-023-03481-9

Yelverton, C. A., O’Keeffe, L. M., Bartels, H. C., McDonnell, C., Geraghty, A. A., O’Brien, E. C., et al. (2023). Association between maternal blood lipids during pregnancy and offspring growth trajectories in a predominantly macrosomic cohort: findings from the ROLO longitudinal birth cohort study. European Journal of Pediatrics. doi:10.1007/s00431-023-05251-2

Lecorguille, M., Mcauliffe, F. M., Twomey, P. J., Viljoen, K., Mehegan, J., Kelleher, C. C., et al. (2023). Maternal Glycaemic and Insulinemic Status and Newborn DNA Methylation: Findings in Women With Overweight and Obesity. Journal of Clinical Endocrinology and Metabolism, 108(1), 85-98. doi:10.1210/clinem/dgac553

Rooney, D. J., Conway, M., O’Keeffe, L. M., McDonnell, C. M., Bartels, H. C., Yelverton, C., et al. (2023). Dietary intakes of iron, folate, and vitamin B12 during pregnancy and correlation with maternal hemoglobin and fetal growth: findings from the ROLO longitudinal birth cohort study. Archives of Gynecology and Obstetrics. doi:10.1007/s00404-023-06916-x

Soepnel, L. M., Draper, C. E., Mabetha, K., Mogashoa, L., Mabena, G., McAuliffe, F. M., et al. (2023). Evaluating implementation of the FIGO Nutrition Checklist for preconception and pregnancy within the Bukhali trial in Soweto, South Africa. International Journal of Gynecology and Obstetrics, 160(S1), 68-79. doi:10.1002/ijgo.14541

Poon, L. C., Nguyen-Hoang, L., Smith, G. N., Bergman, L., O'Brien, P., Hod, M., et al. (2023). Hypertensive disorders of pregnancy and long-term cardiovascular health: FIGO Best Practice Advice. International Journal of Gynecology and Obstetrics, 160(S1), 22-34. doi:10.1002/ijgo.14540

Killeen, S. L., Donnellan, N., O'Reilly, S. L., Hanson, M. A., Rosser, M. L., Medina, V. P., et al. (2023). Using FIGO Nutrition Checklist counselling in pregnancy: A review to support healthcare professionals. International Journal of Gynecology and Obstetrics, 160(S1), 10-21. doi:10.1002/ijgo.14539

Gautam, D., Purandare, N., Maxwell, C. V., Rosser, M. L., O'Brien, P., Mocanu, E., et al. (2023). The challenges of obesity for fertility: A FIGO literature review. International Journal of Gynecology and Obstetrics, 160(S1), 50-55. doi:10.1002/ijgo.14538

Adam, S., McIntyre, H. D., Tsoi, K. Y., Kapur, A., Ma, R. C., Dias, S., et al. (2023). Pregnancy as an opportunity to prevent type 2 diabetes mellitus: FIGO Best Practice Advice. International Journal of Gynecology and Obstetrics, 160(S1), 56-67. doi:10.1002/ijgo.14537

McAuliffe, F. M. (2023). Impact of pregnancy on long-term health: Advances in postpregnancy care—An opportunity to improve long-term maternal health. International Journal of Gynecology and Obstetrics, 160(S1), 4-6. doi:10.1002/ijgo.14536

Roche, D., Rafferty, A., Holden, S., Killeen, S. L., Kennelly, M., & McAuliffe, F. M. (2023). Maternal Well-Being and Stage of Behaviour Change during Pregnancy: A Secondary Analysis of the PEARS Randomised Controlled Trial. International Journal of Environmental Research and Public Health, 20(1). doi:10.3390/ijerph20010034

O'Reilly, S., McGovern, L., Geraghty, A., & McAuliffe, F. (2023). An exploration of prenatal breastfeeding self-efficacy: A scoping review protocol. Open Research Europe, 2. doi:10.12688/openreseurope.14938.3

Yelverton, C. A., Killeen, S. L., Feehily, C., Moore, R. L., Callaghan, S. L., Geraghty, A. A., et al. (2023). Maternal breastfeeding is associated with offspring microbiome diversity; a secondary analysis of the MicrobeMom randomized control trial. Frontiers in Microbiology, 14. doi:10.3389/fmicb.2023.1154114

McGovern, L., Geraghty, A., McAuliffe, F., & O'Reilly, S. (2022). An exploration of prenatal breastfeeding self-efficacy: a scoping review protocol.. Open research Europe, 2, 91. doi:10.12688/openreseurope.14938.3

Gautam, D., Ryan, G. A., McAuliffe, F. M., & Purandare, N. (2023). Armed conflict—Women: Most affected but least responsible. International Journal of Gynecology and Obstetrics, 160(2), 450-451. doi:10.1002/ijgo.14360

O’Reilly, S. L., Conway, M. C., O’Brien, E. C., Molloy, E., Walker, H., O’Carroll, E., & McAuliffe, F. M. (2023). Exploring Successful Breastfeeding Behaviors Among Women Who Have High Body Mass Indices. Journal of Human Lactation, 39(1), 82-92. doi:10.1177/08903344221102839

Du, Y., Rafferty, A. R., McAuliffe, F. M., Mehegan, J., & Mooney, C. (2023). Towards an explainable clinical decision support system for large-for-gestational-age births. PLoS ONE, 18(2 February). doi:10.1371/journal.pone.0281821

Bartels, H. C., Walsh, J. M., O'Connor, C., McParland, P., Carroll, S., Higgins, S., et al. (2023). Placenta accreta spectrum ultrasound stage and fetal growth. International Journal of Gynecology and Obstetrics, 160(3), 955-961. doi:10.1002/ijgo.14399

Philippe, K., Teo, S., Perrotta, C., McAuliffe, F. M., & Phillips, C. M. (2023). Why do preconception and pregnancy lifestyle interventions show little evidence of success in preventing overweight and obesity in children? A scoping review. The Lancet. Global health, 11, S20. doi:10.1016/S2214-109X(23)00103-1

O'Keeffe, L. M., Yelverton, C. A., Bartels, H. C., O'Neill, K. N., McDonnell, C., & McAuliffe, F. M. (2023). Application of multilevel linear spline models for analysis of growth trajectories in a cohort with repeat antenatal and postnatal measures of growth: A prospective cohort study. BMJ Open, 13(3). doi:10.1136/bmjopen-2022-065701

Cody, F., Unterscheider, J., Daly, S., Geary, M., Kennelly, M., McAuliffe, F., et al. (2023). Dynamic growth changes in fetal growth restriction using serial ultrasonographic biometry and umbilical artery doppler: The multicenter PORTO study. International Journal of Gynecology and Obstetrics, 161(1), 198-203. doi:10.1002/ijgo.14470

McNestry, C., Killeen, S. L., Crowley, R. K., & McAuliffe, F. M. (2023). Pregnancy complications and later life women's health. Acta Obstetricia et Gynecologica Scandinavica, 102(5), 523-531. doi:10.1111/aogs.14523

Gainfort, A., Delahunt, A., Killeen, S. L., O'Reilly, S. L., Hébert, J. R., Shivappa, N., & McAuliffe, F. M. (2023). Energy-Adjusted Dietary Inflammatory Index in pregnancy and maternal cardiometabolic health: findings from the ROLO study. AJOG Global Reports, 3(2). doi:10.1016/j.xagr.2023.100214

Du, Y., McNestry, C., Wei, L., Antoniadi, A. M., McAuliffe, F. M., & Mooney, C. (2023). Machine learning-based clinical decision support systems for pregnancy care: A systematic review. International Journal of Medical Informatics, 173. doi:10.1016/j.ijmedinf.2023.105040

Maher, S. E., O'Brien, E. C., Moore, R. L., Byrne, D. F., Geraghty, A. A., Saldova, R., et al. (2023). The association between the maternal diet and the maternal and infant gut microbiome: A systematic review. British Journal of Nutrition, 129(9), 1491-1499. doi:10.1017/S0007114520000847

Ryan, G., Rafferty, A., Murphy, J., Higgins, M. F., Mangina, E., & McAuliffe, F. M. (2023). Virtual reality learning: A randomized controlled trial assessing medical student knowledge of fetal development. International Journal of Gynecology and Obstetrics, 162(1), 292-299. doi:10.1002/ijgo.14684

Moore, R. L., Feehily, C., Killeen, S. L., Yelverton, C. A., Geraghty, A. A., Walsh, C. J., et al. (2023). Ability of Bifidobacterium breve 702258 to transfer from mother to infant: the MicrobeMom randomized controlled trial. American Journal of Obstetrics and Gynecology MFM, 5(7). doi:10.1016/j.ajogmf.2023.100994

Professor Amanda McCann

Bollard, S. M., Howard, J., Curtin, K., Collins, B., Canavan, C., Kelly, P., et al. (2022). Facilitating stakeholder involvement in Comparative Oncology research: A qualitative analysis of key stakeholder opinions and perceptions. Veterinary and Comparative Oncology, 20(4), 737-738. doi:10.1111/vco.12862

Lyons, A., Bhardwaj, N., Masalkhi, M., Fox, P., Frazer, K., McCann, A., et al. (2023). Specialist cancer hospital-based smoking cessation service provision in Ireland. Irish Journal of Medical Science. doi:10.1007/s11845-023-03525-0

Fitzpatrick, P., Bhardwaj, N., Masalkhi, M., Lyons, A., Frazer, K., McCann, A., et al. (2023). Provision of smoking cessation support for patients following a diagnosis of cancer in Ireland. Preventive Medicine Reports, 32. doi:10.1016/j.pmedr.2023.102158

Assoc Professor Margaret McGee

Kulka, M., Brennan, K., & Gee, M. M. (2022). Investigation of canine extracellular vesicles in diffuse large B-cell lymphomas. PLoS ONE, 17(9 September). doi:10.1371/journal.pone.0274261

Brennan, K., Iversen, K. F., Blanco-Fernández, A., Lund, T., Plesner, T., & Mc Gee, M. M. (2022). Extracellular Vesicles Isolated from Plasma of Multiple Myeloma Patients Treated with Daratumumab Express CD38, PD-L1, and the Complement Inhibitory Proteins CD55 and CD59. Cells, 11(21). doi:10.3390/cells11213365

Gorry, R., Brennan, K., Lavin, P. T. M., Sheridan, R., & Mc Gee, M. M. (2023). Phosphorylation of the prolyl isomerase Cyclophilin A regulates its localisation and release from the centrosome during mitosis. Cell Cycle, 22(8), 951-966. doi:10.1080/15384101.2023.2167430

Gorry, R. L., Brennan, K., Lavin, P. T. M., Mazurski, T., Mary, C., Matallanas, D., et al. (2023). Cyclophilin A Isomerisation of Septin 2 Mediates Abscission during Cytokinesis. International Journal of Molecular Sciences, 24(13). doi:10.3390/ijms241311084

Dr Fiona McGillicuddy

Dunne, S., McGillicuddy, F. C., Gibney, E. R., & Feeney, E. L. (2023). Role of food matrix in modulating dairy fat induced changes in lipoprotein particle size distribution in a human intervention. American Journal of Clinical Nutrition, 117(1), 111-120. doi:10.1016/j.ajcnut.2022.10.002

Professor Edward McKone

Carter, S. C., Franciosi, A. N., O'Shea, K. M., O'Carroll, O. M., Sharma, A., Bell, A., et al. (2022). Acute Pulmonary Exacerbation Phenotypes in Patients with Cystic Fibrosis. Annals of the American Thoracic Society, 19(11), 1818-1826. doi:10.1513/AnnalsATS.202111-1266OC

Sawicki, G. S., Konstan, M. W., McKone, E. F., Moss, R. B., Lubarsky, B., Suthoff, E., et al. (2022). Rate of Lung Function Decline in People with Cystic Fibrosis Having a Residual Function Gene Mutation. Pulmonary Therapy, 8(4), 385-395. doi:10.1007/s41030-022-00202-y

McKone, E., Ramos, K. J., Chaparro, C., Blatter, J., Hachem, R., Anstead, M., et al. (2023). Position paper: Models of post-transplant care for individuals with cystic fibrosis. Journal of Cystic Fibrosis, 22(3), 374-380. doi:10.1016/j.jcf.2023.02.011

Uluer, A. Z., MacGregor, G., Azevedo, P., Indihar, V., Keating, C., Mall, M. A., et al. (2023). Safety and efficacy of vanzacaftor–tezacaftor–deutivacaftor in adults with cystic fibrosis: randomised, double-blind, controlled, phase 2 trials. The Lancet Respiratory Medicine, 11(6), 550-562. doi:10.1016/S2213-2600(22)00504-5

Trappe, A., Lakkappa, N., Carter, S., Dillon, E., Wynne, K., McKone, E., et al. (2023). Investigating serum extracellular vesicles in Cystic Fibrosis. Journal of Cystic Fibrosis, 22(4), 674-679. doi:10.1016/j.jcf.2023.02.005

Goralski, J. L., Hoppe, J. E., Mall, M. A., McColley, S. A., McKone, E., Ramsey, B., et al. (2023). Phase 3 Open-Label Clinical Trial of Elexacaftor/Tezacaftor/Ivacaftor in Children Aged 2–5 Years with Cystic Fibrosis and at Least One F508del Allele. American Journal of Respiratory and Critical Care Medicine, 208(1), 59-67. doi:10.1164/rccm.202301-0084OC

Professor Paul McLoughlin

Kostyunina, D. S., Rowan, S. C., Pakhomov, N. V., Dillon, E., Rochfort, K. D., Cummins, P. M., et al. (2023). Shear Stress Markedly Alters the Proteomic Response to Hypoxia in Human Pulmonary Endothelial Cells. American journal of respiratory cell and molecular biology, 68(5), 551-565. doi:10.1165/rcmb.2022-0340OC

Assoc Professor Tara McMorrow

Obaidi, I., Blanco Fernández, A., & McMorrow, T. (2022). Curcumin Sensitises Cancerous Kidney Cells to TRAIL Induced Apoptosis via Let-7C Mediated Deregulation of Cell Cycle Proteins and Cellular Metabolism. International Journal of Molecular Sciences, 23(17). doi:10.3390/ijms23179569

Ibáñez Gaspar, V., & McMorrow, T. (2023). The Curcuminoid EF24 in Combination with TRAIL Reduces Human Renal Cancer Cell Migration by Decreasing MMP-2/MMP-9 Activity through a Reduction in H<inf>2</inf>O<inf>2</inf>. International Journal of Molecular Sciences, 24(2). doi:10.3390/ijms24021043

Professor Walter McNicholas

McNicholas, W. T. (2022). Sleep medicine in Europe: 50 years of evolution. Breathe, 18(3). doi:10.1183/20734735.0206-2022

Fietze, I., Laharnar, N., Bargiotas, P., Basoglu, O. K., Dogas, Z., Drummond, M., et al. (2022). Management of obstructive sleep apnea in Europe – A 10-year follow-up. Sleep Medicine, 97, 64-72. doi:10.1016/j.sleep.2022.06.001

O'Neill, E., Ryan, S., & McNicholas, W. T. (2022). Chronic obstructive pulmonary disease and obstructive sleep apnoea overlap: co-existence, co-morbidity, or causality?. Current Opinion in Pulmonary Medicine, 28(6), 543-551. doi:10.1097/MCP.0000000000000922

McNicholas, W. T., & Korkalainen, H. (2023). Translation of obstructive sleep apnea pathophysiology and phenotypes to personalized treatment: a narrative review. Frontiers in Neurology, 14. doi:10.3389/fneur.2023.1239016

McNicholas, W. T., Arnardottir, E. S., Leppänen, T., Schiza, S., & Randerath, W. (2023). CPAP therapy for obstructive sleep apnoea: persisting challenges in outcome assessment. European Respiratory Journal, 62(1). doi:10.1183/13993003.00182-2023

Zou, D., Grote, L., Basoglu, O. K., Verbraecken, J., Schiza, S., Sliwinski, P., et al. (2023). Arterial bicarbonate is associated with hypoxic burden and uncontrolled hypertension in obstructive sleep apnea - The ESADA cohort. Sleep Medicine, 102, 39-45. doi:10.1016/j.sleep.2022.11.041

McNicholas, W. T., & Philip, P. (2023). CPAP therapy for excessive daytime sleepiness and accident risk in obstructive sleep apnoea. The Lancet Respiratory Medicine, 11(3), 222-224. doi:10.1016/S2213-2600(22)00503-3

van Zeller, M., Basoglu, O. K., Verbraecken, J., Lombardi, C., McNicholas, W. T., Pepin, J. L., et al. (2023). Sleep and cardiometabolic comorbidities in the obstructive sleep apnoea–COPD overlap syndrome: data from the European Sleep Apnoea Database. ERJ Open Research, 9(3). doi:10.1183/23120541.00676-2022

Svedmyr, S., Hedner, J., Bonsignore, M. R., Lombardi, C., Parati, G., Ludka, O., et al. (2023). Hypertension treatment in patients with sleep apnea from the European Sleep Apnea Database (ESADA) cohort – towards precision medicine. Journal of Sleep Research, 32(4). doi:10.1111/jsr.13811

Pires, G. N., Arnardóttir, E. S., Islind, A. S., Leppänen, T., & McNicholas, W. T. (2023). Consumer sleep technology for the screening of obstructive sleep apnea and snoring: current status and a protocol for a systematic review and meta-analysis of diagnostic test accuracy. Journal of Sleep Research, 32(4). doi:10.1111/jsr.13819

Dr Kieran Meade

Abril-Parreño, L., Krogenæs, A. K., Druart, X., Cormican, P., Fair, S., & Meade, K. G. (2022). Cervical immune activation during the luteal phase may compromise subsequent trans-cervical ram sperm transport. Biology of Reproduction, 107(4), 967-976. doi:10.1093/biolre/ioac130

Abril-Parreño, L., Meade, K. G., Krogenæs, A. K., Druart, X., Cormican, P., & Fair, S. (2022). Ewe breed differences in the cervical transcriptome at the follicular phase of a synchronised oestrous cycle. BMC Genomics, 23(1). doi:10.1186/s12864-022-08603-8

Meade, K. G. (2023). The increasing relevance of immunobiology within a connected animal science curriculum. Translational Animal Science, 7(1). doi:10.1093/tas/txad007

Donnellan, E. M., Cormican, P., Reid, C., Duggan, G., Stiavnicka, M., Meade, K. G., & Fair, S. (2023). The transcriptomic response of bovine uterine tissue is altered in response to sperm from high- and low-fertility bulls†. Biology of reproduction, 108(6), 912-921. doi:10.1093/biolre/ioad031

De Matteis, G., Scatà, M. C., Grandoni, F., Crisà, A., O'Brien, M. B., Meade, K. G., & Catillo, G. (2023). Corrigendum to "Effect of IL8 haplotype on immunological traits in periparturient dairy cows" [Vet. Immunol. Immunopathol. 238 (2021) 1-8/110288. Veterinary immunology and immunopathology, 262, 110540. doi:10.1016/j.vetimm.2022.110540

Professor Wim Meijer

Mahon, J. M., Monleon, A. J. C., Gill, L. W., O’Sullivan, J. J., & Meijer, W. G. (2022). Wastewater-based epidemiology (WBE) for SARS-CoV-2 – A review focussing on the significance of the sewer network using a Dublin city catchment case study. Water Science and Technology, 86(6), 1402-1425. doi:10.2166/wst.2022.278

Steenbeek, R., Emke, E., Vughs, D., Matias, J., Boogaerts, T., Castiglioni, S., et al. (2022). Spatial and temporal assessment of crack cocaine use in 13 European cities through wastewater-based epidemiology. Science of the Total Environment, 847. doi:10.1016/j.scitotenv.2022.157222

Görgü, L., Hawtree, D., O'Grady, M. J., Muldoon, C., Masterson, B., Meijer, W. G., et al. (2023). The MÉRA Data Extraction toolkit. Meteorological Applications, 30(1). doi:10.1002/met.2111

Cogliati, M., Arikan-Akdagli, S., Barac, A., Bostanaru, A. C., Brito, S., Çerikçioglu, N., et al. (2023). Environmental and bioclimatic factors influencing yeasts and molds distribution along European shores. Science of the Total Environment, 859. doi:10.1016/j.scitotenv.2022.160132

Nolan, T. M., Reynolds, L. J., Sala-Comorera, L., Martin, N. A., Stephens, J. H., O'Hare, G. M. P., et al. (2023). Land use as a critical determinant of faecal and antimicrobial resistance gene pollution in riverine systems. Science of the Total Environment, 871. doi:10.1016/j.scitotenv.2023.162052

Gao, G., O’Sullivan, J. J., Corkery, A., Bedri, Z., O’Hare, G. M. P., & Meijer, W. G. (2023). The Use of Transport Time Scales as Indicators of Pollution Persistence in a Macro-Tidal Setting. Journal of Marine Science and Engineering, 11(5), 1073. doi:10.3390/jmse11051073

Martin, N. A., Sala-Comorera, L., Gao, G., Corkery, A., Reynolds, L. J., Nolan, T. M., et al. (2023). Inclusion of hydrodynamic properties of bathing waters is critical in selecting faecal indicators to assess public health impacts of faecal contamination. Water Research, 242. doi:10.1016/j.watres.2023.120137

Professor Grace Mulcahy

Lightbody, K. L., Austin, A., Lambert, P. A., von Samson-Himmelstjerna, G., Jürgenschellert, L., Krücken, J., et al. (2023). Validation of a serum ELISA test for cyathostomin infection in equines. International Journal for Parasitology. doi:10.1016/j.ijpara.2023.07.001

Russell, T., Macori, G., Russell, L., Mulcahy, G., Sammin, D., Fanning, S., & Barry, G. (2023). Persistence and recovery of SARS-CoV-2 from abiotic and biotic surfaces found in meat processing plants. Journal of Food Safety. doi:10.1111/jfs.13086

Golding, E., Neavyn Neita, A., Walshe, N., Hanlon, A., Mulcahy, G., & Duggan, V. (2023). Survey of the knowledge and perceptions of horse owners in Ireland of common clinical conditions and their impact. Equine Veterinary Journal, 55(2), 270-281. doi:10.1111/evj.13589

Walshe, N., Burrell, A., Kenny, U., Mulcahy, G., Duggan, V., & Regan, A. (2023). A qualitative study of perceived barriers and facilitators to sustainable parasite control on thoroughbred studs in Ireland. Veterinary Parasitology, 317. doi:10.1016/j.vetpar.2023.109904

Professor Keith Murphy

Holtby, A. R., McGivney, B. A., Browne, J. A., Katz, L. M., Murphy, K. J., & Hill, E. W. (2023). Variation in salivary cortisol responses in yearling Thoroughbred racehorses during their first year of training. PLoS ONE, 18(4 April). doi:10.1371/journal.pone.0284102

Professor Fionnuala Ní Aínle

Klok, F. A., Piazza, G., Sharp, A. S. P., Ní Ainle, F., Jaff, M. R., Chauhan, N., et al. (2022). Ultrasound-facilitated, catheter-directed thrombolysis vs anticoagulation alone for acute intermediate-high-risk pulmonary embolism: Rationale and design of the HI-PEITHO study. American Heart Journal, 251, 43-53. doi:10.1016/j.ahj.2022.05.011

Saeed, K., & Áinle, F. N. (2022). Standardizing definitions for bleeding events in studies including pregnant women: A call to action. Research and Practice in Thrombosis and Haemostasis, 6(7). doi:10.1002/rth2.12822

Ní Áinle, F., Middeldorp, S., Le Gal, G., & Hunt, B. J. (2022). Protecting patients during a shortage of thrombolytic agents. The Lancet, 400(10359), 1193-1194. doi:10.1016/S0140-6736(22)01795-0

Bistervels, I. M., Buchmüller, A., Wiegers, H. M. G., Ní Áinle, F., Tardy, B., Donnelly, J., et al. (2022). Intermediate-dose versus low-dose low-molecular-weight heparin in pregnant and post-partum women with a history of venous thromboembolism (Highlow study): an open-label, multicentre, randomised, controlled trial. The Lancet, 400(10365), 1777-1787. doi:10.1016/S0140-6736(22)02128-6

Potere, N., Barco, S., Mahé, I., Cesarman-Maus, G., Angchaisuksiri, P., Leader, A., et al. (2022). Awareness of venous thromboembolism among patients with cancer: Preliminary findings from a global initiative for World Thrombosis Day. Journal of Thrombosis and Haemostasis, 20(12), 2964-2971. doi:10.1111/jth.15902

Schreiber, K., & Ní Áinle, F. (2022). Maternal thrombotic and haemorrhagic complications in pregnant women with antiphospholipid syndrome. The Lancet Rheumatology, 4(12), e808-e810. doi:10.1016/S2665-9913(22)00337-X

Hennessy, M., Reidy, B., Ní Ainle, F., Conneely, J., McDermott, C., & Scanaill, P. (2023). Supratherapeutic dabigatran: a cause of life-threatening haemorrhage*. Anaesthesia Reports, 11(1). doi:10.1002/anr3.12208

Bistervels, I. M., Wiegers, H. M. G., Áinle, F. N., Bleker, S. M., Chauleur, C., Donnelly, J., et al. (2023). Onset of labor and use of analgesia in women using thromboprophylaxis with 2 doses of low-molecular-weight heparin: insights from the Highlow study. Journal of Thrombosis and Haemostasis, 21(1), 57-67. doi:10.1016/j.jtha.2022.11.004

Grant, O., Mulligan, K., Donnelly, J., Ni Ainle, F., & Mhuircheartaigh, R. N. (2023). Management of Hemorrhage during Cesarean Delivery in a Patient with Vascular Ehlers-Danlos Syndrome: A Case Report. A and A Practice, 17(1), E01655. doi:10.1213/XAA.0000000000001655

Coveney, J., O'Loughlin, J., Ainle, F. N., Drew, R. J., & Boyle, M. A. (2023). The full blood count in screening asymptomatic infants for early-onset sepsis: A cross-sectional study. Acta Paediatrica, International Journal of Paediatrics, 112(3), 385-390. doi:10.1111/apa.16602

Stals, M. A. M., Moumneh, T., Ainle, F. N., Aujesky, D., van Bemmel, T., Bertoletti, L., et al. (2023). Noninvasive diagnostic work-up for suspected acute pulmonary embolism during pregnancy: a systematic review and meta-analysis of individual patient data. Journal of Thrombosis and Haemostasis, 21(3), 606-615. doi:10.1016/j.jtha.2022.11.025

Bistervels, I. M., Buchmüller, A., Wiegers, H. M. G., Áinle, F. N., Tardy, B., Donnelly, J., et al. (2023). Intermediate-Dose Versus Low-Dose Low-Molecular-Weight Heparin in Pregnant and Post-Partum Women with a History of Venous Thromboembolism (Highlow Study): An Open-Label, Multicentre, Randomised, Controlled Trial. Obstetrical and Gynecological Survey, 78(5), 259-261. doi:10.1097/01.ogx.0000935828.55597.e4

Neary, E., Murphy, C. A., Ní Áinle, F., El-Khuffash, A., Cotter, M., Kirkham, C., & McCallion, N. (2023). Plasma transfusion to prevent intraventricular haemorrhage in very preterm infants. Cochrane Database of Systematic Reviews, 2023(5). doi:10.1002/14651858.CD012341.pub2

Professor Niamh Nowlan

Sotiriou, V., Huang, Y., Ahmed, S., Isaksson, H., & Nowlan, N. C. (2022). Prenatal murine skeletogenesis partially recovers from absent skeletal muscle as development progresses. European cells & materials, 44, 115-132. doi:10.22203/eCM.v044a08

Collins, J. M., Lang, A., Parisi, C., Moharrer, Y., Nijsure, M. P., Kim, J. H. T., et al. (2023). YAP and TAZ couple osteoblast precursor mobilization to angiogenesis and mechanoregulated bone development. doi:10.1101/2023.01.20.524918

Khatib, N. S., Monsen, J., Ahmed, S., Huang, Y., Hoey, D. A., & Nowlan, N. C. (2023). Mechanoregulatory role of TRPV4 in prenatal skeletal development. Science Advances, 9(4). doi:10.1126/sciadv.ade2155

Assoc Professor Eoin O'Cearbhaill

Levey, R. E., Tornifoglio, B., Stone, A. J., Kerskens, C., Robinson, S. T., Coulter, F. B., et al. (2022). Towards a Whole Sample Imaging Approach Using Diffusion Tensor Imaging to Examine the Foreign Body Response to Explanted Medical Devices. Polymers, 14(22). doi:10.3390/polym14224819

Sargioti, N., Levingstone, T. J., O’Cearbhaill, E. D., McCarthy, H. O., & Dunne, N. J. (2023). Metallic Microneedles for Transdermal Drug Delivery: Applications, Fabrication Techniques and the Effect of Geometrical Characteristics. Bioengineering, 10(1). doi:10.3390/bioengineering10010024

Assoc Professor David O'Connell

Ward, S. E., Guest, T., Byrne, C., Lopes, P., O'Sullivan, J. M., Doherty, D., et al. (2023). Macrophage Galactose Lectin Contributes to the Regulation of FVIII (Factor VIII) Clearance in Mice - Brief Report. Arteriosclerosis, Thrombosis, and Vascular Biology, 43(4), 540-546. doi:10.1161/ATVBAHA.122.317807

Professor John O'Connor

Moreton, N., Puzio, M., & O'Connor, J. J. (2022). The effects of the superoxide dismutase mimetic, MnTMPyP, post hypoxia and oxygen glucose deprivation in isolated rat hippocampal slices. Brain Research Bulletin, 190, 105-115. doi:10.1016/j.brainresbull.2022.09.021

Professor Kevin O'Connor

Offei, B., Braun-Galleani, S., Venkatesh, A., Casey, W. T., O'Connor, K. E., Byrne, K. P., & Wolfe, K. H. (2022). Identification of genetic variants of the industrial yeast Komagataella phaffii (Pichia pastoris) that contribute to increased yields of secreted heterologous proteins. PLoS Biology, 20(12). doi:10.1371/journal.pbio.3001877

Liu, S., Narancic, T., Tham, J. L., & O’Connor, K. E. (2023). ß-oxidation–polyhydroxyalkanoates synthesis relationship in Pseudomonas putida KT2440 revisited. Applied Microbiology and Biotechnology, 107(5-6), 1863-1874. doi:10.1007/s00253-023-12413-7

Gaffey, J., O’Donovan, C., Murphy, D., O’Connor, T., Walsh, D., Vergara, L. A., et al. (2023). Synergetic Benefits for a Pig Farm and Local Bioeconomy Development from Extended Green Biorefinery Value Chains. Sustainability (Switzerland), 15(11). doi:10.3390/su15118692

Assoc Professor Tadhg Ó'Cróinín

Carney, G., Weimer, B. C., Clyne, M., & Cróinín, T. (2023). Different stages of the infection cycle are enriched for Campylobacter strains with distinct phenotypes and levels of fluoroquinolone resistance. Microbiology (United Kingdom), 169(6). doi:10.1099/mic.0.001349

Professor Stefan Oscarson

Khanna, K., Raymond, W. W., Jin, J., Charbit, A. R., Gitlin, I., Tang, M., et al. (2022). Exploring antiviral and anti-inflammatory effects of thiol drugs in COVID-19. American Journal of Physiology - Lung Cellular and Molecular Physiology, 323(3), L372-L389. doi:10.1152/ajplung.00136.2022

Romanò, C., Bengtsson, D., Infantino, A. S., & Oscarson, S. (2023). Synthesis of fluoro- and seleno-containing d-lactose and d-galactose analogues. Organic and Biomolecular Chemistry, 21(12), 2545-2555. doi:10.1039/d2ob02299k

Reihill, M., Fournière, V., Cheallaigh, A. N., Edlund, J. O., Miller, G. J., Borén, T., et al. (2023). Synthesis of a B-Antigen Hexasaccharide, a B-Lewis b Heptasaccharide and Glycoconjugates Thereof to Investigate Binding Properties of Helicobacter pylori. Chemistry - A European Journal, 29(16). doi:10.1002/chem.202203672

Addante, A., Raymond, W., Gitlin, I., Charbit, A., Orain, X., Scheffler, A. W., et al. (2023). A novel thiol-saccharide mucolytic for the treatment of muco-obstructive lung diseases. European Respiratory Journal, 61(5). doi:10.1183/13993003.02022-2022

Professor Donal O'Shea

McHale, F., Ng, K., Scanlon, D., Cooper, J., Grady, C., Norton, C., et al. (2022). Implementation evaluation of an Irish secondary-level whole school programme: A qualitative inquiry. Health Promotion International, 37(5). doi:10.1093/heapro/daac131

Wrigley Kelly, N. E., Kenny, G., Cassidy, F. C., Garcia-Leon, A. A., De Barra, C., Mallon, P. W. G., et al. (2022). Individuals with obesity who survive SARS-CoV-2 infection have preserved antigen-specific T cell frequencies. Obesity, 30(10), 1927-1931. doi:10.1002/oby.23526

Kearns, S., O'Shea, D., & Neff, K. (2023). Factors that help and hinder transgender and nonbinary youth accessing gender care in Ireland: A multistakeholder exploration. Journal of Nursing Scholarship. doi:10.1111/jnu.12907

Storan, D., Swan, N., Swan, K., Thuillier, R., Skehan, S., Gallagher, T., et al. (2023). Clinical features and outcomes of appendiceal neuroendocrine tumours: 10 year audit from the Irish NET Centre of Excellence. Journal of Neuroendocrinology. doi:10.1111/jne.13329

Flynn, C. R., Kumar, A. P., O'Shea, D., & Higgins, M. J. (2023). Alpelisib-induced thyroiditis in a patient with metastatic breast cancer: Is routine monitoring of thyroid function required?. Current Problems in Cancer: Case Reports, 9. doi:10.1016/j.cpccr.2023.100219

Gallagher, C., Mahon, J. M., O'Neill, C., Cassidy, F. C., Dunbar, H., De Barra, C., et al. (2023). Mucosal-Associated Invariant T Cells Are Altered in Patients with Hidradenitis Suppurativa and Contribute to the Inflammatory Milieu. Journal of Investigative Dermatology, 143(6), 1094-1097.e2. doi:10.1016/j.jid.2022.11.011

Cassidy, F. C., Kedia-Meht, N., Bergin, R., Woodcock, A., Berisha, A., Bradley, B., et al. (2023). Glycogen-fuelled metabolism supports rapid mucosal-associated invariant T cell responses. Proceedings of the National Academy of Sciences of the United States of America, 120(25). doi:10.1073/pnas.2300566120

De Barra, C., Khalil, M., Mat, A., O'Donnell, C., Shaamile, F., Brennan, K., et al. (2023). Glucagon-like peptide-1 therapy in people with obesity restores natural killer cell metabolism and effector function. Obesity, 31(7), 1787-1797. doi:10.1002/oby.23772

Assoc Professor Niamh O'Sullivan

Byrne, D. J., Garcia-Pardo, M. E., Cole, N. B., Batnasan, B., Heneghan, S., Sohail, A., et al. (2022). Liver X receptor-agonist treatment rescues degeneration in a Drosophila model of hereditary spastic paraplegia. Acta Neuropathologica Communications, 10(1). doi:10.1186/s40478-022-01343-6

O'Sullivan, N. (2023). The nilpotent genus of finitely generated residually nilpotent groups. Journal of Group Theory. doi:10.1515/jgth-2022-0098

Professor Stephen Pennington

FitzGerald, O., Behrens, F., Barton, A., Bertheussen, H., Boutouyrie-Dumont, B., Coates, L., et al. (2023). Application of clinical and molecular profiling data to improve patient outcomes in psoriatic arthritis.. Therapeutic advances in musculoskeletal disease, 15, 1759720X231192315. doi:10.1177/1759720x231192315

Nielsen, S. H., Magee, C., Groen, S. S., Sinkeviciute, D., Bay-Jensen, A. C., Karsdal, M. A., et al. (2023). Differentiating patients with psoriasis from psoriatic arthritis using collagen biomarkers. Clinical and Experimental Rheumatology, 41(3), 574-580. doi:10.55563/clinexprheumatol/jmt9jv

Siebert, S., Pennington, S. R., Raychaudhuri, S. P., Chaudhari, A. J., Jin, J. Q., Liao, W., et al. (2023). Novel Insights From Basic Science in Psoriatic Disease at the GRAPPA 2022 Annual Meeting.. The Journal of rheumatology, jrheum.2023-jrheum.0535. doi:10.3899/jrheum.2023-0535

Ng, B. C. K., Jadon, D., Adebajo, A., Ayan, G., Callis Duffin, K., Chandran, V., et al. (2023). Proceedings of the GRAPPA 2022 Executive Retreat.. The Journal of rheumatology, jrheum.2023-jrheum.0537. doi:10.3899/jrheum.2023-0537

Ng, B. C. K., Jadon, D., Behrens, F., de Wit, M., FitzGerald, O., Gladman, D. D., et al. (2023). Proceedings of the Collaborative Research Network Meeting at the GRAPPA 2022 Annual Meeting.. The Journal of rheumatology, jrheum.2023-jrheum.0534. doi:10.3899/jrheum.2023-0534

Assoc Professor Antoinette Perry

Silva, R., Glennon, K., Metoudi, M., Moran, B., Salta, S., Slattery, K., et al. (2023). Unveiling the epigenomic mechanisms of acquired platinum-resistance in high-grade serous ovarian cancer. International Journal of Cancer, 153(1), 120-132. doi:10.1002/ijc.34496

Dr Andrew Phillips

Lee, B. Y. T., Phillips, A. D., Hanif, M., Söhnel, T., & Hartinger, C. G. (2022). Triazolyl- vs Pyridyl-Functionalized N-Heterocyclic Carbene Complexes: Impact of the Pendant N-Donor Ligand on Intramolecular C-C Bond Formation. ACS Organic and Inorganic Au, 2(6), 511-524. doi:10.1021/acsorginorgau.2c00035

Dr Maria Prencipe

Professor Prem Puri

Zani, A., & Puri, P. (2023). Congenital diaphragmatic hernia: exploring the intersection of personal experience and research. Pediatric Research. doi:10.1038/s41390-023-02664-5

Puri, P., & Höllwarth, M. E. (2023). Preface to the second edition. Pediatric Surgery: Diagnosis and Management, vii.

Duess, J. W., Gosemann, J. H., Kaskova Gheorghescu, A., Puri, P., & Thompson, J. (2023). Y-27632 Impairs Angiogenesis on Extra-Embryonic Vasculature in Post-Gastrulation Chick Embryos. Toxics, 11(2). doi:10.3390/toxics11020134

Dr Sergio Rey–Keim

Schito, L., & Rey, S. (2022). Hypoxia orchestrates the lymphovascular–immune ensemble in cancer. Trends in Cancer, 8(9), 771-784. doi:10.1016/j.trecan.2022.04.008

Rey-Keim, S., & Schito, L. (2022). Path analysis of intra-metastatic hypoxia in breast cancer. doi:10.1101/2022.11.03.515032

Dr Emmanuel Reynaud

Reynaud, E. (2022). The Blaschka legacy, illuminating the oceans from the heart of Europe. FMR magazine (Franco Maria Ricci Magazine).

Dr Clare Reynolds

Satokar, V. V., Vickers, M. H., Reynolds, C. M., Ponnampalam, A. P., Firth, E. C., Garg, M. L., et al. (2022). Fish oil supplementation of rats fed a high fat diet during pregnancy improves offspring insulin sensitivity. Frontiers in Nutrition, 9. doi:10.3389/fnut.2022.968443

Bridge-Comer, P. E., Vickers, M. H., Morton-Jones, J., Spada, A., Rong, J., & Reynolds, C. M. (2022). Maternal intake of fructose or artificial sweetener during pregnancy and lactation has persistent effects on metabolic and reproductive health of dams post-weaning. Journal of Developmental Origins of Health and Disease, 13(5), 642-649. doi:10.1017/S2040174422000022

Reynolds, C. M. (2023). Don't sugar coat it: The independent and synergistic impacts of obesity and gestational diabetes on placental parameters. Journal of Physiology, 601(7), 1155-1156. doi:10.1113/JP284407

Professor Helen Roche

Mitchelson, K. A. J., Tran, T. T. T., Dillon, E. T., Vlckova, K., Harrison, S. M., Ntemiri, A., et al. (2022). Yeast ß-Glucan Improves Insulin Sensitivity and Hepatic Lipid Metabolism in Mice Humanized with Obese Type 2 Diabetic Gut Microbiota. Molecular Nutrition and Food Research, 66(22). doi:10.1002/mnfr.202100819

Brennan, L., O'Gorman, A., Barth, S., Cadden, T., Dean, M., Doohan, F., et al. (2022). An innovative food system approach to diversifying protein intake: Protein-I: Shared Island sustainable healthy nutrition. Nutrition Bulletin, 47(4), 516-523. doi:10.1111/nbu.12590

Lee, B. Y., Ordovás, J. M., Parks, E. J., Anderson, C. A. M., Barabási, A. L., Clinton, S. K., et al. (2022). Research gaps and opportunities in precision nutrition: an NIH workshop report. The American journal of clinical nutrition, 116(6), 1877-1900. doi:10.1093/ajcn/nqac237

Mitchelson, K. A. J., Ni Chathail, M. B., & Roche, H. M. (2023). Systems Biology Approaches to Inform Precision Nutrition. Proceedings of the Nutrition Society. doi:10.1017/S0029665123002732

Murphy, C. H., Mccarthy, S. N., & Roche, H. M. (2023). Nutrition strategies to counteract sarcopenia: a focus on protein, LC n -3 PUFA, and precision nutrition. Proceedings of the Nutrition Society. doi:10.1017/S0029665123003555

de Marco Castro, E., Valli, G., Buffière, C., Guillet, C., Mullen, B., Pratt, J., et al. (2023). Peripheral Amino Acid Appearance Is Lower Following Plant Protein Fibre Products, Compared to Whey Protein and Fibre Ingestion, in Healthy Older Adults despite Optimised Amino Acid Profile. Nutrients, 15(1). doi:10.3390/nu15010035

de Marco Castro, E., Kampschulte, N., Murphy, C. H., Schebb, N. H., & Roche, H. M. (2023). Oxylipin status, before and after LC n-3 PUFA supplementation, has little relationship with skeletal muscle biology in older adults at risk of sarcopenia. Prostaglandins Leukotrienes and Essential Fatty Acids, 189. doi:10.1016/j.plefa.2022.102531

O’Connell, F., Mylod, E., Donlon, N. E., Heeran, A. B., Butler, C., Bhardwaj, A., et al. (2023). Energy Metabolism, Metabolite, and Inflammatory Profiles in Human Ex Vivo Adipose Tissue Are Influenced by Obesity Status, Metabolic Dysfunction, and Treatment Regimes in Patients with Oesophageal Adenocarcinoma. Cancers, 15(6). doi:10.3390/cancers15061681

Murphy, C. H., McCarthy, S. N., McMorrow, A. M., Egan, B., McGowan, M. J., Rafferty, S., et al. (2023). Prevalence and determinants of sarcopenia in community-dwelling older adults in Ireland. Aging Clinical and Experimental Research, 35(8), 1651-1660. doi:10.1007/s40520-023-02453-4

Rigutto-Farebrother, J., Ahles, S., Cade, J., Murphy, K. J., Plat, J., Schwingshackl, L., et al. (2023). Perspectives on the application of CONSORT guidelines to randomised controlled trials in nutrition. European Journal of Nutrition, 62(5), 2319-2332. doi:10.1007/s00394-023-03137-5

Professor Brian Rodriguez

Fu, B., Tzitzios, V., Zhang, Q., Rodriguez, B., Pissas, M., & Sofianos, M. V. (2023). Exploring the Magnetic and Electrocatalytic Properties of Amorphous MnB Nanoflakes. Nanomaterials, 13(2). doi:10.3390/nano13020300

Al-Shammari, R. M., Kassem, A., Al-attar, N., Manzo, M., Gallo, K., Whyte, P., et al. (2023). Antibacterial properties of lithium niobate crystal substrates. International Journal of Optomechatronics, 17(1). doi:10.1080/15599612.2023.2250400

Geoghegan, N., O'Loughlin, M., Delaney, C., Rochfort, K. D., Kennedy, M., Kolagatla, S., et al. (2023). Controlled degradation of polycaprolactone-based micropillar arrays. Biomaterials Science, 11(9), 3077-3091. doi:10.1039/d3bm00165b

Almohammed, S., Kanoun, M. B., Goumri-Said, S., Alam, M. W., Fularz, A., Alnaim, A., et al. (2023). Thermally-controlled spherical peptide gel architectures prepared using the pH switch method. Peptide Science, 115(3). doi:10.1002/pep2.24304

Kolagatla, S., Collins, G. A., Kilpatrick, J. I., Kargin, E., Ryan, K. M., & Rodriguez, B. J. (2023). Cycle-dependent morphology and surface potential of germanium nanowire anode electrodes. Chemical Communications, 59(60), 9203-9206. doi:10.1039/d3cc02751a

Professor Silke Ryan

Doheny, E. P., Flood, M., Ryan, S., McCarthy, C., O'Carroll, O., O'Seaghdha, C., et al. (2023). Prediction of low pulse oxygen saturation in COVID-19 using remote monitoring post hospital discharge. International Journal of Medical Informatics, 169. doi:10.1016/j.ijmedinf.2022.104911

Doheny, E. P., O'Callaghan, B. P. F., Fahed, V. S., Liegey, J., Goulding, C., Ryan, S., & Lowery, M. M. (2023). Estimation of respiratory rate and exhale duration using audio signals recorded by smartphone microphones. Biomedical Signal Processing and Control, 80. doi:10.1016/j.bspc.2022.104318

Dr Luana Schito

Schito, L., & Rey, S. (2022). Hypoxia orchestrates the lymphovascular–immune ensemble in cancer. Trends in Cancer, 8(9), 771-784. doi:10.1016/j.trecan.2022.04.008

Rey-Keim, S., & Schito, L. (2022). Path analysis of intra-metastatic hypoxia in breast cancer. doi:10.1101/2022.11.03.515032

Zhang, H., Wong, C. C. L., Wei, H., Gilkes, D. M., Korangath, P., Chaturvedi, P., et al. (2023). Retraction Note: HIF-1-dependent expression of angiopoietin-like 4 and L1CAM mediates vascular metastasis of hypoxic breast cancer cells to the lungs (Oncogene, (2012), 31, 14, (1757-1770), 10.1038/onc.2011.365). Oncogene, 42(28), 2234. doi:10.1038/s41388-023-02720-8

Dr Noreen Sheehy

Mccullagh, L., Sheehy, N., De Gascun, C. F., & Hassan, J. (2023). D614G SARS-CoV-2 Pseudovirus Infectivity and Binding of Spike Protein to the ACE2 Receptor Inversely Correlates with Serum SARS-CoV-2-Specific IgG Levels. Viral Immunology, 36(1), 63-70. doi:10.1089/vim.2022.0117

Professor Denis Shields

Klatte, N., Shields, D. C., & Agoni, C. (2023). Modelling the Transitioning of SARS-CoV-2 nsp3 and nsp4 Lumenal Regions towards a More Stable State on Complex Formation. International Journal of Molecular Sciences, 24(1). doi:10.3390/ijms24010720

Bera, I., O’Sullivan, M., Flynn, D., & Shields, D. C. (2023). Relationship between Protein Digestibility and the Proteolysis of Legume Proteins during Seed Germination. Molecules, 28(7). doi:10.3390/molecules28073204

Professor Jeremy Simpson

Stitch, M., Boota, R. Z., Chalkley, A. S., Keene, T. D., Simpson, J. C., Scattergood, P. A., et al. (2022). Photophysical Properties and DNA Binding of Two Intercalating Osmium Polypyridyl Complexes Showing Light-Switch Effects. Inorganic Chemistry, 61(38), 14947-14961. doi:10.1021/acs.inorgchem.2c01231

Heffernan, L. F., Suckrau, P. M., Banerjee, T., Mysior, M. M., & Simpson, J. C. (2022). An imaging-based RNA interference screen for modulators of the Rab6-mediated Golgi-to-ER pathway in mammalian cells. Frontiers in Cell and Developmental Biology, 10. doi:10.3389/fcell.2022.1050190

Melling, G. E., Conlon, R., Pantazi, P., Dellar, E. R., Samuel, P., Baena-Lopez, L. A., et al. (2022). Confocal microscopy analysis reveals that only a small proportion of extracellular vesicles are successfully labelled with commonly utilised staining methods. Scientific Reports, 12(1). doi:10.1038/s41598-021-04225-4

G. Dornan, L., & C. Simpson, J. (2023). Rab6-mediated retrograde trafficking from the Golgi: the trouble with tubules. Small GTPases, 14(1), 26-44. doi:10.1080/21541248.2023.2238330

O'Connor, A., Jurado-Martín, I., Mysior, M. M., Manzira, A. L., Drabinska, J., Simpson, J. C., et al. (2023). A universal stress protein upregulated by hypoxia has a role in Burkholderia cenocepacia intramacrophage survival: Implications for chronic infection in cystic fibrosis. MicrobiologyOpen, 12(1). doi:10.1002/mbo3.1311

Assoc Professor Albert Smolenski

Kierans, S. J., Fagundes, R. R., Malkov, M. I., Sparkes, R., Dillon, E. T., Smolenski, A., et al. (2023). Hypoxia induces a glycolytic complex in intestinal epithelial cells independent of HIF-1-driven glycolytic gene expression. Proceedings of the National Academy of Sciences of the United States of America, 120(35). doi:10.1073/pnas.2208117120

O’Donoghue, L., Comer, S. P., Hiebner, D. W., Schoen, I., von Kriegsheim, A., & Smolenski, A. (2023). RhoGAP6 interacts with COPI to regulate protein transport. Biochemical Journal, 480(14), 1109-1127. doi:10.1042/BCJ20230013

Professor Cormac Taylor

Taylor, C. T., & Scholz, C. C. (2022). The effect of HIF on metabolism and immunity. Nature Reviews Nephrology, 18(9), 573-587. doi:10.1038/s41581-022-00587-8

Steiner, C. A., Cartwright, I. M., Taylor, C. T., & Colgan, S. P. (2022). Hypoxia-inducible factor as a bridge between healthy barrier function, wound healing, and fibrosis. American Journal of Physiology - Cell Physiology, 323(3), C866-C878. doi:10.1152/ajpcell.00227.2022

Harnoss, J. M., Cai, J., Hinterkopf, S., Radhakrishnan, P., Schmitt, A., Dupovac, M., et al. (2022). Prolyl Hydroxylase Inhibition Mitigates Allograft Injury during Liver Transplantation. Transplantation, 106(10), E430-E440. doi:10.1097/TP.0000000000004258

Kennel, K. B., Burmeister, J., Radhakrishnan, P., Giese, N. A., Giese, T., Salfenmoser, M., et al. (2022). The HIF-prolyl hydroxylases have distinct and nonredundant roles in colitis-associated cancer. JCI Insight, 7(22). doi:10.1172/jci.insight.153337

Strowitzki, M. J., Bleul, M., Tuffs, C., Dupovac, M., Blanco, A., Cummins, E. P., et al. (2023). Carbon dioxide attenuates PKC signaling and is sensed in monocytes and macrophages by a CA2-dependent, coupled intracellular pH-response. Physiology, 38(S1). doi:10.1152/physiol.2023.38.s1.5734238

Harnoss, J., Kennel, K., Burmeister, J., Radhakrishnan, P., Giese, N., Giese, T., et al. (2023). The HIF-prolyl hydroxylases have distinct and non-redundant biological roles in the pathogenesis of colitis-associated cancer. Physiology, 38(S1). doi:10.1152/physiol.2023.38.s1.5732873

Professor Emma Teeling

Wilkinson, G. S., Adams, D. M., Haghani, A., Lu, A. T., Zoller, J., Breeze, C. E., et al. (2022). Author Correction: DNA methylation predicts age and provides insight into exceptional longevity of bats (Nature Communications, (2021), 12, 1, (1615), 10.1038/s41467-021-21900-2). Nature Communications, 13(1). doi:10.1038/s41467-022-33102-5

Power, M. L., Foley, N. M., Jones, G., & Teeling, E. C. (2022). Taking flight: An ecological, evolutionary and genomic perspective on bat telomeres. Molecular Ecology, 31(23), 6053-6068. doi:10.1111/mec.16117

Simmons, N. B., Ingala, M. R., Pieri, M., Volkert, T. L., Singh, L. N., Philip, P., et al. (2023). The genome sequence of Molossus nigricans (Chiroptera, Molossidae; Miller, 1902). Wellcome Open Research, 8. doi:10.12688/wellcomeopenres.18724.1

Nolan, J. M., Skujina, I., Hurpy, G., & Teeling, E. C. (2023). FIRST EVIDENCE OF THE CINNABAR MOTH TYRIA JACOBAEAE PRESENT IN THE DIET OF THE BROWN LONG-EARED BAT PLECOTUS AURITUS. Biology and Environment, 123(B2), 57-65. doi:10.1353/bae.2023.a901466

Lu, A. T., Fei, Z., Haghani, A., Robeck, T. R., Zoller, J. A., Li, C. Z., et al. (2023). Author Correction: Universal DNA methylation age across mammalian tissues (Nature Aging, (2023), 10.1038/s43587-023-00462-6). Nature Aging. doi:10.1038/s43587-023-00499-7

Déjosez, M., Marin, A., Hughes, G. M., Morales, A. E., Godoy-Parejo, C., Gray, J. L., et al. (2023). Bat pluripotent stem cells reveal unusual entanglement between host and viruses. Cell, 186(5), 957-974.e28. doi:10.1016/j.cell.2023.01.011

Kaplow, I. M., Sestili, H. H., Prasad, K., Brown, A. R., Foley, K., Pfenning, A. R., et al. (2023). Relating enhancer genetic variation across mammals to complex phenotypes using machine learning. Science, 380(6643). doi:10.1126/SCIENCE.ABM7993

Goodman, D. B., Lind, A. L., Redlich, R. W., Brown, A. R., Teeling, E. C., Andrews, G., et al. (2023). Evolutionary constraint and innovation across hundreds of placental mammals. Science, 380(6643). doi:10.1126/SCIENCE.ABN3943

Supple, M. A., Subramanian, A., Mudide, A., Serres-Armero, A., Fuentes, V. M., Foley, K., et al. (2023). The contribution of historical processes to contemporary extinction risk in placental mammals. Science, 380(6643). doi:10.1126/SCIENCE.ABN5856

Moon, K. L., Huson, H. J., Morrill, K., Wang, M. S., Srikanth, K., Svenson, G. J., et al. (2023). Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs. Science, 380(6643). doi:10.1126/SCIENCE.ABN5887

Phalke, N., Andrews, G., Armstrong, J. C., Bianchi, M., Birren, B. W., Bredemeyer, K. R., et al. (2023). Mammalian evolution of human cis-regulatory elements and transcription factor binding sites. Science, 380(6643). doi:10.1126/SCIENCE.ABN7930

Paulat, N. S., Storer, J. M., Moreno-Santillán, D. D., Osmanski, A. B., Sullivan, K. A. M., Grimshaw, J. R., et al. (2023). Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia. Molecular Biology and Evolution, 40(5). doi:10.1093/molbev/msad092

Haghani, A., Li, C. Z., Robeck, T. R., Zhang, J., Lu, A. T., Ablaeva, J., et al. (2023). DNA methylation networks underlying mammalian traits. Science, 381(6658). doi:10.1126/science.abq5693

Bapteste, E., Huneman, P., Keller, L., Teulière, J., Lopez, P., Teeling, E. C., et al. (2023). Expanding evolutionary theories of ageing to better account for symbioses and interactions throughout the Web of Life. Ageing Research Reviews, 89. doi:10.1016/j.arr.2023.101982

Schneor, L., Kaltenbach, S., Friedman, S., Tussia-Cohen, D., Nissan, Y., Shuler, G., et al. (2023). Comparison of antiviral responses in two bat species reveals conserved and divergent innate immune pathways. iScience, 26(8). doi:10.1016/j.isci.2023.107435

Ruedi, M., Vernes, S. C., Teeling, E. C., & Mai, M. (n.d.). The genome sequence of the Soprano Pipistrelle, Pipistrellus pygmaeus (Leach, 1825). Wellcome Open Research, 8, 360. doi:10.12688/wellcomeopenres.19895.1

van der Kooij, J., Vernes, S. C., Teeling, E. C., Mai, M., Johannessen, L. E., & Gundersen, G. (n.d.). The genome sequence of the northern bat, Eptesicus nilssonii (Keyserling & Blasius, 1839). Wellcome Open Research, 8, 362. doi:10.12688/wellcomeopenres.19896.1

Dr Stephen Thorpe

Heywood, H. K., Thorpe, S. D., Jeropoulos, R. M., Caton, P. W., & Lee, D. A. (2022). Modulation of sirtuins during monolayer chondrocyte culture influences cartilage regeneration upon transfer to a 3D culture environment. Frontiers in Bioengineering and Biotechnology, 10. doi:10.3389/fbioe.2022.971932

Professor Desmond Tobin

Johnston, D. G. W., Hambly, R., Kearney, N., Tobin, D. J., & Kirby, B. (2023). Cell-free DNA is elevated in the serum of patients with hidradenitis suppurativa. Journal of Dermatology, 50(2), 271-273. doi:10.1111/1346-8138.16676

Casalou, C., Mayatra, J. M., & Tobin, D. J. (2023). Beyond the Epidermal-Melanin-Unit: The Human Scalp Anagen Hair Bulb Is Home to Multiple Melanocyte Subpopulations of Variable Melanogenic Capacity. International Journal of Molecular Sciences, 24(16). doi:10.3390/ijms241612809

Professor Douglas Veale

Floudas, A., Smith, C. M., Tynan, O., Neto, N., Krishna, V., Wade, S. M., et al. (2022). Distinct stromal and immune cell interactions shape the pathogenesis of rheumatoid and psoriatic arthritis. Annals of the Rheumatic Diseases, 81(9), 1224-1242. doi:10.1136/annrheumdis-2021-221761

Sundanum, S., Gorman, Á., & Veale, D. (2022). OA08 A case of Recalcitrant Psoriatic Disease- should new treatment strategies be considered?. Rheumatology Advances in Practice, 6(Supplement_1). doi:10.1093/rap/rkac066.008

Wolnik, J., Kubiak, G., Skoczynska, M., Wiland, P., Fearon, U., Veale, D., et al. (2022). Generation of two hiPSC lines, (DMBi003-A and DMBi004-A), by reprogramming peripheral blood mononuclear cells and fibroblast-like synoviocytes from rheumatoid arthritis patients. Stem Cell Research, 64. doi:10.1016/j.scr.2022.102886

Veale, D. J., Firestein, G. S., Wechalekar, M. D., & Najm, A. (2022). Editorial: Synovial tissue biopsy research. Frontiers in Medicine, 9. doi:10.3389/fmed.2022.1004029

Quinn, S., Maguire, S., O’Shea, F., O’Neill, L., Molloy, E., Fearon, U., et al. (2023). Characteristics and burden of disease in patients with radiographic versus non-radiographic axial spondyloarthritis in the ASRI cohort. Irish Journal of Medical Science. doi:10.1007/s11845-023-03439-x

Barker, B. E., Hanlon, M. M., Marzaioli, V., Smith, C. M., Cunningham, C. C., Fletcher, J. M., et al. (2023). The mammalian target of rapamycin contributes to synovial fibroblast pathogenicity in rheumatoid arthritis. Frontiers in Medicine, 10. doi:10.3389/fmed.2023.1029021

Hoffmann-Vold, A. M., Brunborg, C., Airò, P., Ananyeva, L. P., Czirják, L., Guiducci, S., et al. (2023). Cohort Enrichment Strategies for Progressive Interstitial Lung Disease in Systemic Sclerosis From European Scleroderma Trials and Research. Chest, 163(3), 586-598. doi:10.1016/j.chest.2022.09.044

Iudici, M., Mongin, D., Siegert, E., Carreira, P. E., Distler, J., Henes, J., et al. (2023). Glucocorticoids prescribing practices in systemic sclerosis: an analysis of the EUSTAR database. Rheumatology (United Kingdom), 62(4), 1559-1567. doi:10.1093/rheumatology/keac533

Sundanum, S., Orr, C., & Veale, D. (2023). Targeted Therapies in Psoriatic Arthritis—An Update. International Journal of Molecular Sciences, 24(7). doi:10.3390/ijms24076384

Marzaioli, V., Canavan, M., Donnelly, A., Wade, S., Fraser, A., O'Sullivan, T., et al. (2021). Knowledge of disease, diagnosis, adherence and impact of research in an Irish cohort of patients with inflammatory arthritis.. HRB open research, 4, 60. doi:10.12688/hrbopenres.13274.2

Rafael Vidal, C., Malvar Fernández, B., Martínez-Ramos, S., Mouriño Rodríguez, C., Altabás González, I., Floudas, A., et al. (2023). POS1414 TYPE I INTERFERONS INDUCE TIE2-MEDIATED ENDOTHELIAL CELL DYSFUNCTION IN SYSTEMIC LUPUS ERYTHEMATOSUS. Annals of the Rheumatic Diseases, 82(Suppl 1), 1061.1-1061. doi:10.1136/annrheumdis-2023-eular.2564

Raimondo, M. G., Rauber, S., Mohammadian, H., Vogg, M., Xu, C., Rius Rigau, A., et al. (2023). OP0106 SYNOVIAL IMPRINTING OF SKIN-DERIVED IMMUNE CELLS INITIATES SPREADING OF INFLAMMATION FROM SKIN TO JOINT IN PSORIATIC ARTHRITIS. Annals of the Rheumatic Diseases, 82(Suppl 1), 71.2-71. doi:10.1136/annrheumdis-2023-eular.3844

O’neill, M., Veale, D., Molloy, E., Orr, C., & Minnock, P. (2023). POS1201-HPR ADVANCED PRACTICE RHEUMATOLOGY NURSING FOR PATIENTS WITH GOUT TARGETS URATE, KNOWLEDGE, AND LIFESTYLE TO ENHANCE CHRONIC DISEASE OUTCOME. Annals of the Rheumatic Diseases, 82(Suppl 1), 933.1-933. doi:10.1136/annrheumdis-2023-eular.1537

Hanlon, M. M., Mcgarry, T., Marzaioli, V., Amaechi, S., Song, Q., Nagpal, S., et al. (2023). Rheumatoid arthritis macrophages are primed for inflammation and display bioenergetic and functional alterations. Rheumatology (United Kingdom), 62(7), 2611-2620. doi:10.1093/rheumatology/keac640

Martínez-Ramos, S., Rafael-Vidal, C., Malvar-Fernández, B., Rodriguez-Trillo, A., Veale, D., Fearon, U., et al. (2023). HOXA5 is a key regulator of class 3 semaphorins expression in the synovium of rheumatoid arthritis patients. Rheumatology (United Kingdom), 62(7), 2621-2630. doi:10.1093/rheumatology/keac654

Jenkins, B. J., Blagih, J., Ponce-Garcia, F. M., Canavan, M., Gudgeon, N., Eastham, S., et al. (2023). Canagliflozin impairs T cell effector function via metabolic suppression in autoimmunity. Cell Metabolism, 35(7), 1132-1146.e9. doi:10.1016/j.cmet.2023.05.001

Dr Martina Wallace

Handzlik, M. K., Gengatharan, J. M., Frizzi, K. E., McGregor, G. H., Martino, C., Rahman, G., et al. (2023). Insulin-regulated serine and lipid metabolism drive peripheral neuropathy. Nature, 614(7946), 118-124. doi:10.1038/s41586-022-05637-6

Wortham, M., Liu, F., Harrington, A. R., Fleischman, J. Y., Wallace, M., Mulas, F., et al. (2023). Nutrient regulation of the islet epigenome controls adaptive insulin secretion. Journal of Clinical Investigation, 133(8). doi:10.1172/JCI165208

Eade, K. T., Ansell, B. R. E., Giles, S., Fallon, R., Harkins-Perry, S., Nagasaki, T., et al. (2023). iPSC-derived retinal pigmented epithelial cells from patients with macular telangiectasia show decreased mitochondrial function. Journal of Clinical Investigation, 133(9). doi:10.1172/JCI163771

Turner, R., Mukherjee, R., Wallace, M., & Sanchez-Gurmaches, J. (2023). Quantitative Determination of De Novo Fatty Acid Synthesis in Brown Adipose Tissue Using Deuterium Oxide. Journal of Visualized Experiments, 2023(195). doi:10.3791/64219

Green, C. R., Bonelli, R., Ansell, B. R. E., Tzaridis, S., Handzlik, M. K., McGregor, G. H., et al. (2023). Divergent amino acid and sphingolipid metabolism in patients with inherited neuro-retinal disease. Molecular Metabolism, 72. doi:10.1016/j.molmet.2023.101716

Turner, R., Cordes, T., & Wallace, M. (2023). Itaconate trims the fat. Nature Metabolism, 5(6), 915-916. doi:10.1038/s42255-023-00819-6

Professor Wenxin Wang

Gunes, S., He, Z., Tsoukou, E., Ng, S. W., Boehm, D., Lopes, B. P., et al. (2022). Cell death induced in glioblastoma cells by Plasma-Activated-Liquids (PAL) is primarily mediated by membrane lipid peroxidation and not ROS influx. PLoS ONE, 17(9 September). doi:10.1371/journal.pone.0274524

Li, Y., He, Z., Lyu, J., Wang, X., Qiu, B., Lara-Sáez, I., et al. (2022). Hyperbranched Poly(ß-amino ester)s (HPAEs) Structure Optimisation for Enhanced Gene Delivery: Non-Ideal Termination Elimination. Nanomaterials, 12(21). doi:10.3390/nano12213892

Wang, C., Guo, Z., Liang, J., Li, N., Song, R., Luo, L., et al. (2022). An oral delivery vehicle based on konjac glucomannan acetate targeting the colon for inflammatory bowel disease therapy. Frontiers in Bioengineering and Biotechnology, 10. doi:10.3389/fbioe.2022.1025155

Zhou, Y., Wang, X., Li, Y., Wang, W., Gilchrist, M. D., & Zhang, N. (2022). Toward the Scalable Fabrication of Fully Bio-Based Antimicrobial and UVB-Blocking Transparent Polylactic Acid Films That Incorporate Natural Coatings and Nanopatterns. ACS Applied Materials and Interfaces, 14(48), 54338-54348. doi:10.1021/acsami.2c15416

Wang, X., Zhou, Y., Johnson, M., Milne, C., Sigen, A., Li, Y., et al. (2023). A Novel Hydrophilic, Antibacterial Chitosan-Based Coating Prepared by Ultrasonic Atomization Assisted LbL Assembly Technique. Journal of Functional Biomaterials, 14(1). doi:10.3390/jfb14010043

Wang, X., Li, Y., Wang, X., Sandoval, D. M., He, Z., Sigen, A., et al. (2023). Guanidyl-Rich Poly(ß Amino Ester)s for Universal Functional Cytosolic Protein Delivery and Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) Cas9 Ribonucleoprotein Based Gene Editing. ACS Nano. doi:10.1021/acsnano.3c03269

Lyu, J., Li, Y., Li, Z., Polanowski, P., Jeszka, J. K., Matyjaszewski, K., & Wang, W. (2023). Modelling Development in Radical (Co)Polymerization of Multivinyl Monomers. Angewandte Chemie - International Edition, 62(5). doi:10.1002/anie.202212235

Rodrigues, P. R., Wang, X., Li, Z., Lyu, J., Wang, W., & Vieira, R. P. (2023). A new nano hyperbranched ß-pinene polymer: Controlled synthesis and nonviral gene delivery. Colloids and Surfaces B: Biointerfaces, 222. doi:10.1016/j.colsurfb.2022.113032

Li, Y., Wang, X., He, Z., Li, Z., Johnson, M., Qiu, B., et al. (2023). A New Optimization Strategy of Highly Branched Poly(ß-Amino Ester) for Enhanced Gene Delivery: Removal of Small Molecular Weight Components. Polymers, 15(6). doi:10.3390/polym15061518

Wang, C., Sun, L., Li, Q., Li, Z., Xu, C., Zhang, X., et al. (2023). Highly branched poly(ß-amino ester)s with narrow molecular weight distribution: Fractionation and gene transfection activity. Chinese Chemical Letters, 34(3). doi:10.1016/j.cclet.2022.06.050

Li, Y., He, Z., Wang, X., Li, Z., Johnson, M., Foley, R., et al. (2023). Branch Unit Distribution Matters for Gene Delivery. ACS Macro Letters, 12(6), 780-786. doi:10.1021/acsmacrolett.3c00152

Azhari, Z., Smith, P., McMahon, S., Wang, W., & Cameron, R. E. (2023). Modulating Drug Release from Short Poly(ethylene glycol) Block Initiated Poly(L-lactide) Di-block Copolymers. Pharmaceutical Research, 40(7), 1697-1707. doi:10.1007/s11095-022-03228-8

Jagannath, A., Li, Y., Cong, H., Hassan, J., Gonzalez, G., Wang, W., et al. (2023). UV-Assisted Hyperbranched Poly(ß-amino ester) Modification of a Silica Membrane for Two-Step Microfluidic DNA Extraction from Blood. ACS Applied Materials and Interfaces, 15(26), 31159-31172. doi:10.1021/acsami.3c03523

Li, Z., Lyu, J., Li, Y., Qiu, B., Johnson, M., Tai, H., & Wang, W. (2023). Controlled Polymerization of Acrylamide via One-Pot and One-Step Aqueous Cu(0)-Mediated Reversible-Deactivation Radical Polymerization. Macromolecules, 56(13), 5111-5116. doi:10.1021/acs.macromol.3c00343

Lyu, J., Miao, Y., Li, Z., Li, Y., Gao, Y., Johnson, M., et al. (2023). Where is the induction from? Effect of disproportionation and comproportionation in Cu(0)-mediated reversible deactivation radical polymerization. Polymer, 280. doi:10.1016/j.polymer.2023.126055

Wang, R., Wang, W., Jensen, M., Li, X., Qiu, H., Jin, R., & Wang, N. (2023). Polypyrrole-doped cellulose hydrogel evaporator for steam generation and wastewater cleaning. Journal of Sol-Gel Science and Technology, 107(2), 363-374. doi:10.1007/s10971-023-06128-4

Zhang, J., He, Z., Li, Y., Shen, Y., Wu, G., Power, L., et al. (2023). Enhanced gene transfection efficacy and safety through granular hydrogel mediated gene delivery process. Acta Biomaterialia, 166, 85-94. doi:10.1016/j.actbio.2023.04.041

Li, Y., He, Z., Sigen, A., Wang, X., Li, Z., Johnson, M., et al. (2023). Artificial Intelligence (AI)-Aided Structure Optimization for Enhanced Gene Delivery: The Effect of the Polymer Component Distribution (PCD). ACS Applied Materials and Interfaces, 15(30), 36667-36675. doi:10.1021/acsami.3c05010

Li, Y., Wang, X., He, Z., Johnson, M., Sigen, A., Lara-Sáez, I., et al. (2023). 3D Macrocyclic Structure Boosted Gene Delivery: Multi-Cyclic Poly(ß-Amino Ester)s from Step Growth Polymerization. Journal of the American Chemical Society, 145(31), 17187-17200. doi:10.1021/jacs.3c04191

Dong, X., Fan, J., Xie, W., Wu, X., Wei, J., He, Z., et al. (2023). Efficacy evaluation of chimeric antigen receptor-modified human peritoneal macrophages in the treatment of gastric cancer. British Journal of Cancer, 129(3), 551-562. doi:10.1038/s41416-023-02319-6

Professor Bill Watson

Eliwan, H. O., Watson, W. R. G., Melo, A. M., Kelly, L. A., Omer, M., Jafar, A., et al. (2023). Selective modulation of monocyte and neutrophil responses with activated protein C in preterm infants. Journal of Maternal-Fetal and Neonatal Medicine, 36(1). doi:10.1080/14767058.2023.2183467

Martini, C., Logan, J. M., Sorvina, A., Gordon, C., Beck, A. R., S-Y. Ung, B., et al. (2023). Aberrant protein expression of Appl1, Sortilin and Syndecan-1 during the biological progression of prostate cancer. Pathology, 55(1), 40-51. doi:10.1016/j.pathol.2022.08.001

Aslam, S., O'Dea, M., Kelly, L. A., O'Neill, A., McKenna, E., Hurley, T., et al. (2023). Melatonin Alters Innate Immune Function in Infants with Neonatal Encephalopathy. Neonatology, 120(3), 325-333. doi:10.1159/000527714

Professor Matthias Wilm

Wilm, M. S. (2023). Synthesis of large lipid membranes with integrated membrane proteins from gas phase. Biophysical journal, 122(3S1). doi:10.1016/j.bpj.2022.11.1314

Professor Gerry Wilson

Alexander, L. C., Huebner, J. L., Cicconetti, G., Jordan, J. M., Renner, J. B., Doherty, M., et al. (2022). Tibiofemoral knee osteoarthritis progresses symmetrically by knee compartment in the GOGO cohort. Osteoarthritis and Cartilage Open, 4(3). doi:10.1016/j.ocarto.2022.100288

Sutcliffe, M., Nair, N., Oliver, J., Morgan, A. W., Isaacs, J. D., Wilson, A. G., et al. (2022). Pre-defined gene co-expression modules in rheumatoid arthritis transition towards molecular health following anti-TNF therapy. Rheumatology (United Kingdom), 61(12), 4935-4944. doi:10.1093/rheumatology/keac204

Nair, N., & Wilson, A. G. (2023). Assessing the potential of epigenetic targets as biomarkers in the diagnosis and treatment of rheumatoid arthritis. Expert Review of Clinical Immunology, 19(5), 483-488. doi:10.1080/1744666X.2023.2193686

Yap, C. F., Nair, N., De Vries, A., Loeff, F. C., Morgan, A. W., Isaacs, J. D., et al. (2023). HLA-DRB1 and HLA-DQA1 associated with immunogenicity to adalimumab therapy in patients with rheumatoid arthritis. Annals of the Rheumatic Diseases. doi:10.1136/ard-2023-223955

Ling, S. F., Yap, C. F., Nair, N., Bluett, J., Morgan, A. W., Isaacs, J. D., et al. (2023). OA03 Harnessing quantitative proteomics to identify biomarkers of treatment response to etanercept in patients with rheumatoid arthritis. Rheumatology, 62(Supplement_2). doi:10.1093/rheumatology/kead104.003

Smith, S. L., Alexander, S., Nair, N., Viatte, S., Eyre, S., Hyrich, K. L., et al. (2023). Pre-treatment calprotectin (MRP8/14) provides no added value to testing CRP alone in terms of predicting response to TNF inhibitors in rheumatoid arthritis in a post hoc analysis. Annals of the Rheumatic Diseases, 82(5), 611-620. doi:10.1136/ard-2022-222519

Ling, S., Yap, C. F., Nair, N., Bluett, J., Morgan, A., Isaacs, J., et al. (2023). OP0103 ANALYSIS OF PROTEIN QUANTITATIVE TRAIL LOCI TO IDENTIFY GENETIC BIOMARKERS OF TREATMENT RESPONSE TO ETANERCEPT IN PATIENTS WITH RHEUMATOID ARTHRITIS. Scientific Abstracts. doi:10.1136/annrheumdis-2023-eular.6091

Mohammad Ariff, A. B., Nair, N., Bluett, J., Barton, A., Viatte, S., Plant, D., et al. (2023). POS0313 INVESTIGATING THE RELATIONSHIP BETWEEN METHOTREXATE ADHERENCE AND BIOLOGIC RESPONSE IN RHEUMATOID ARTHRITIS PATIENTS. Scientific Abstracts. doi:10.1136/annrheumdis-2023-eular.3804

Hum, R. M., Ho, P., Nair, N., Jani, M., Morgan, A. W., Isaacs, J. D., et al. (2023). Non-trough adalimumab and certolizumab drug levels associated with a therapeutic EULAR response in adherent patients with rheumatoid arthritis. Rheumatology (United Kingdom), 62(6), 2090-2097. doi:10.1093/rheumatology/keac564

Curry, P. D. K., Chinoy, H., Jani, M., Plant, D., Hyrich, K. L., Morgan, A. W., et al. (2023). The Effect of COVID-19 on Medication Adherence in a Rheumatoid Arthritis (BRAGGSS) and Psoriatic Arthritis (OUTPASS) UK Cohort.. The Journal of rheumatology, jrheum.2022-jrheum.1277. doi:10.3899/jrheum.2022-1277

Ling, S. F., Yap, C. F., Nair, N., Bluett, J., Morgan, A. W., Isaacs, J. D., et al. (2023). A proteomics study of rheumatoid arthritis patients on etanercept identifies putative biomarkers associated with clinical outcome measures.. Rheumatology (Oxford, England), kead321. doi:10.1093/rheumatology/kead321

Professor Kenneth Wolfe

Bergin, S. A., Zhao, F., Ryan, A. P., Müller, C. A., Nieduszynski, C. A., Zhai, B., et al. (2022). Systematic Analysis of Copy Number Variations in the Pathogenic Yeast Candida parapsilosis Identifies a Gene Amplification in RTA3 That is Associated with Drug Resistance. mBio, 13(5). doi:10.1128/mbio.01777-22

Igharo, B., Byrne, K. P., Ghnewa, H., Davey, R. P., Fubara, A., Welc, J., et al. (2022). Draft Genome Sequence of the Yeast Torulaspora quercuum Strain UCD657, Isolated from Soil in Ireland. Microbiology Resource Announcements, 11(11). doi:10.1128/mra.00952-22

Don, A., Byrne, K. P., Alqaderi, F., Mazhova, A., Chaney, B. O. L., Redmond, S., et al. (2022). Draft Genome Sequence of the Yeast Blastobotrys aristata Strain UCD613, Isolated from Soil in Ireland. Microbiology Resource Announcements, 11(11). doi:10.1128/mra.00957-22

Salzberg, L. I., Martos, A. A. R., Lombardi, L., Jermiin, L. S., Blanco, A., Byrne, K. P., & Wolfe, K. H. (2022). A widespread inversion polymorphism conserved among Saccharomyces species is caused by recurrent homogenization of a sporulation gene family. PLoS Genetics, 18(11). doi:10.1371/journal.pgen.1010525

Nägeli, L., Schuler, M., Segessemann, T., Frei, D., Frey, J. E., Wolfe, K. H., et al. (2023). Genome sequence data of the strongly antagonistic yeast Pichia kluyveri isolate APC 11.10 B as a foundation for analysing biocontrol mechanisms. Data in Brief, 49. doi:10.1016/j.dib.2023.109394

Dr Yan Yan

Zhang, W., Li, J., Silveira, C. P., Cai, Q., Dawson, K. A., Cagney, G., & Yan, Y. (2022). Nanoscale shape-dependent histone modifications.. PNAS nexus, 1(4), pgac172. doi:10.1093/pnasnexus/pgac172

Wang, Y. F., Zhou, Y., Sun, J. B., Wang, X., Jia, Y., Ge, K., et al. (2023). The Yin and Yang of the protein corona on the delivery journey of nanoparticles. Nano Research, 16(1), 715-734. doi:10.1007/s12274-022-4849-6

Behan, J. A., Xie, Z., Wang, Y. F., Yang, X., Aastrup, T., Yan, Y., et al. (2023). Quartz Crystal Microbalance Method to Measure Nanoparticle-Receptor Interactions and Evaluate Nanoparticle Design Efficiency. JACS Au, 3(6), 1623-1633. doi:10.1021/jacsau.3c00084

Dr Xiangming Zhu

Beato, Z., & Zhu, X. (2023). Synthesis of Superarmed Thioglycosides via the Ring Opening of 1,2-Orthoesters. Synlett. doi:10.1055/a-2132-1938

Other

Professor Stephen Gordon
Graham, H. A., Doherty, M. L., More, S. J., Gordon, S. V., Gormley, E. P., Mooney, C. T., et al. (2022). Advancing national animal health and welfare policy. In American Journal of Veterinary Research (Vol. 83, Iss. 12). doi:10.2460/ajvr.22.10.0179
Professor Walter Kolch
Egan, D., Kreileder, M., Nabhan, M., Iglesias-Martinez, L. F., Dovedi, S. J., Valge-Archer, V., et al. (2023). Data from Small Gene Networks Delineate Immune Cell States and Characterize Immunotherapy Response in Melanoma. doi:10.1158/2326-6066.c.6709391.v1
Egan, D., Kreileder, M., Nabhan, M., Iglesias-Martinez, L. F., Dovedi, S. J., Valge-Archer, V., et al. (2023). Supplementary Figures from Small Gene Networks Delineate Immune Cell States and Characterize Immunotherapy Response in Melanoma. doi:10.1158/2326-6066.23563796.v1
Egan, D., Kreileder, M., Nabhan, M., Iglesias-Martinez, L. F., Dovedi, S. J., Valge-Archer, V., et al. (2023). Supplementary Figures from Small Gene Networks Delineate Immune Cell States and Characterize Immunotherapy Response in Melanoma. doi:10.1158/2326-6066.23563796
Egan, D., Kreileder, M., Nabhan, M., Iglesias-Martinez, L. F., Dovedi, S. J., Valge-Archer, V., et al. (2023). Supplementary Tables from Small Gene Networks Delineate Immune Cell States and Characterize Immunotherapy Response in Melanoma. doi:10.1158/2326-6066.23563793
Egan, D., Kreileder, M., Nabhan, M., Iglesias-Martinez, L. F., Dovedi, S. J., Valge-Archer, V., et al. (2023). Supplementary Tables from Small Gene Networks Delineate Immune Cell States and Characterize Immunotherapy Response in Melanoma. doi:10.1158/2326-6066.23563793.v1
Egan, D., Kreileder, M., Nabhan, M., Iglesias-Martinez, L. F., Dovedi, S. J., Valge-Archer, V., et al. (2023). Data from Small Gene Networks Delineate Immune Cell States and Characterize Immunotherapy Response in Melanoma. doi:10.1158/2326-6066.c.6709391
Egan, D., Kreileder, M., Nabhan, M., Iglesias-Martinez, L. F., Dovedi, S. J., Valge-Archer, V., et al. (2023). Supplementary Figures from Small Gene Networks Delineate Immune Cell States and Characterize Immunotherapy Response in Melanoma. doi:10.1158/2326-6066.23828296.v1
Egan, D., Kreileder, M., Nabhan, M., Iglesias-Martinez, L. F., Dovedi, S. J., Valge-Archer, V., et al. (2023). Supplementary Figures from Small Gene Networks Delineate Immune Cell States and Characterize Immunotherapy Response in Melanoma. doi:10.1158/2326-6066.23828296
Egan, D., Kreileder, M., Nabhan, M., Iglesias-Martinez, L. F., Dovedi, S. J., Valge-Archer, V., et al. (2023). Supplementary Tables from Small Gene Networks Delineate Immune Cell States and Characterize Immunotherapy Response in Melanoma. doi:10.1158/2326-6066.23828293.v1
Egan, D., Kreileder, M., Nabhan, M., Iglesias-Martinez, L. F., Dovedi, S. J., Valge-Archer, V., et al. (2023). Supplementary Tables from Small Gene Networks Delineate Immune Cell States and Characterize Immunotherapy Response in Melanoma. doi:10.1158/2326-6066.23828293
Egan, D., Kreileder, M., Nabhan, M., Iglesias-Martinez, L. F., Dovedi, S. J., Valge-Archer, V., et al. (2023). Data from Small Gene Networks Delineate Immune Cell States and Characterize Immunotherapy Response in Melanoma. doi:10.1158/2326-6066.c.6709391.v2
Professor Fionnuala McAuliffe
Yelverton, C., Killeen, S. L., Van Sinderen, D., Feehily, C., Cotter, P. D., & McAuliffe, F. (2023). Maternal well-being and infant microbiome diversity in the MicrobeMom randomised control trial. In British Journal of Obstetrics and Gynaecology. Blackwell Publishing Inc.. doi:10.1111/1471-0528.17419
Abstracts of the 2022 BMFMS meeting (2023). In BJOG: An International Journal of Obstetrics & Gynaecology (Vol. 130, Iss. S1, pp. 4-129). Wiley. doi:10.1111/1471-0528.17419
Gainfort, A., Delahunt, A., Killeen, S. L., O'Reilly, S. L., Hebert, J. R., & McAuliffe, F. (2023). Associations between maternal Energy-adjusted Dietary InflammatoryIndex (E-DII™) in pregnancy and maternal cardiometabolic health.. In British Journal of Obstetrics and Gynaecology (Iss. Abstracts of the 2022 BMFMS meeting). Blackwell Publishing Inc.. doi:10.1111/1471-0528.17419
Killeen, S. L., Callaghan, S. L., O'Reilly, S. L., & McAuliffe, F. (2023). Identifying critical outcomes in pregnancy nutrition: a core outcome set development study.. In British Journal of Obstetrics and Gynaecology. Blackwell Publishing Inc.. doi:10.1111/1471-0528.17419
Lynch, S., Killeen, S. L., & McAuliffe, F. (2023). Maternal Diet Quality and Placental Weight: A Secondary Analysis of the PEARS Randomised Controlled Trial - An mHealth-supported lifestyle intervention among pregnant women with overweight and obesity.. In British Journal of Obstetrics and Gynaecology (Iss. Abstracts of the 2022 BMFMS meeting). Blackwell Publishing Inc.. doi:10.1111/1471-0528.17419
McNestry, C., Crowly, R. K., & McAuliffe, F. (2023). Higher bone turnover during pregnancy is associated with lower bone mineral density at ten years postpartum – a potential opportunity for risk reduction. In British Journal of Obstetrics and Gynaecology. Blackwell Publishing Inc.. doi:10.1111/1471-0528.17419
Roche, D., Rafferty, A., Killeen, S. L., Holden, S., Kennelly, M., & McAuliffe, F. (2023). Maternal well-being and behaviour change during pregnancy: A secondary analysis of the PEARS randomised controlled trial.. In British Journal of Obstetrics and Gynaecology (Iss. Abstracts of the 2022 BMFMS meeting). Blackwell Publishing Inc.. doi:10.1111/1471-0528.17419
O'Toole, F., & McAuliffe, F. (2023). Enhancing prenatal phenotype through deep phenotyping - a multidisciplinary approach involving fetal medicine, antenatal MRI and perinatal genetics for antenatal diagnosis. In British Maternal & Fetal Medicine Society (Iss. Abstracts of the 2022 BMFMS meeting). doi:10.1111/1471-0528.17419
Hokey, E., Delahunt, A., O'Reilly, S., & McAuliffe, F. (2023). Dietary intakes of 5-year-old Irish children in relation to body composition and socio-economic status; findings from the ROLO longitudinal birth cohort study.
Tan, M. L., Mohd Shukri, I. A., Ho, J. J., O'Sullivan, E. J., Omer-Salim, A., & McAuliffe, F. (2023). What makes a breastfeeding-friendly city? A scoping review of criteria used to determine breastfeeding-friendliness. In Breastfeeding Medicine (Vol. 18, Iss. 5). Mary Ann Liebert. doi:10.1089/bfm.2023.29239.abstracts

Poster

Dr Jana Haase
Jones, A. K. C., Spreng, S. A., Brown, E., Mc Veigh, C. J., Inoue, A., Ahnert-Hilger, G., & Haase, J. (2023). Serotonin transporter regulation by Ga proteins: evidence for coupling of serotonin transport and the G protein cycle. Poster session presented at the meeting of 20th Meeting of the International Society for Serotonin Research "Serotonin on the Mexican Caribbean”.
Professor Fionnuala McAuliffe
McGovern, L., Geraghty, A., McAuliffe, F., & O'Reilly, S. (n.d.). An exploration of prenatal breastfeeding self-efficacy: a scoping review protocol. Poster session presented at the meeting of Unknown Conference.

Preprint

Professor Oliver Blacque
Pir, M., Yenisert, F., Karaman, A., Begar, E., Tsiropoulou, S., Firat-Karalar, E. N., et al. (2023). CilioGenics: an integrated method and database for predicting novel ciliary genes. doi:10.1101/2023.03.31.535034
Dr Nicola Fletcher
Purves, K., Brown, H., Haverty, R., Ryan, A., Griffin, L. L., McCormack, J., et al. (2023). First Eurasian cases of SARS-CoV-2 seropositivity in a free-ranging urban population of wild fallow deer. doi:10.1101/2023.07.07.547941
Dr Virginie Gautier
O’Reilly, S., Kenny, G., Alrawahneh, T., Francois, N., Angeliadis, M., de Masson d’Autume, V., et al. (2023). Development of a Novel Medium Throughput Flow-Cytometry Based Micro-Neutralisation Test for SARS-CoV-2 with Applications in Clinical Vaccine Trials and Antibody Screening. doi:10.1101/2023.01.18.23284713
Professor Stephen Gordon
Hall, T., McHugo, G., Mullen, M., Ward, J., Killick, K., Browne, J., et al. (2023). Integrative and comparative genomic analyses of mammalian macrophage responses to intracellular mycobacterial pathogens. doi:10.1101/2023.07.14.549042
Dr Rory Johnson
Vancura, A., Gutierrez, A. H., Hennig, T., Pulido-Quetglas, C., Slack, F., Johnson, R., & Häfliger, S. (2022). Is evolutionary conservation a useful predictor for cancer long noncoding RNAs? Insights from the Cancer lncRNA Census 3. doi:10.1101/2022.09.01.506261
Chouvardas, P., Dhaka, B., Zimmerli, M., Hanhart, D., Moser, M., Guillen-Ramirez, H., et al. (2022). Functional identification of cis-regulatory long noncoding RNAs at controlled false-discovery rates. doi:10.1101/2022.09.18.508380
Professor Boris Kholodenko
Yabaji, S., Rukhlenko, O., Chatterjee, S., Bhattacharya, B., Wood, E., Kasaikina, M., et al. (2023). Cell state transition analysis identifies interventions that improve control of<i>M. tuberculosis</i>infection by susceptible macrophages. doi:10.1101/2023.02.09.527908
Professor Ulla Knaus
Mthunzi, L., Rowan, S. C., Knaus, U. G., & McLoughlin, P. (2022). Gremlin 1 is required for macrophage M2 polarization. doi:10.1101/2022.12.07.519468
Dr Arun Kumar
Kumar, A. H. S. (2022). Pharmacological targets of Asundexian relevant to its therapeutic efficacy in treating cardiovascular diseases.. doi:10.21203/rs.3.rs-2115682/v1
Friend, J., & Kumar, A. H. S. (2023). A network pharmacology approach to assess the comparative pharmacodynamics of pharmaceutical excipient trehalose in human, mouse and rat. doi:10.1101/2023.01.23.525154
Almhanna, H., Mahdi AL-Mahmodi, A. M., Kadhim, A., & Kumar, A. H. S. (2023). Network and structural analysis of quail mucins with expression pattern of MUC1 and MUC4 in the intestines of the Iraqi Common Quail (Coturnix Coturnix). doi:10.1101/2023.07.18.549497
Kumar, A. H. S. (2023). An assessment of the human Sortilin1 protein network, its expression and targetability using small molecules. doi:10.1101/2023.04.13.536697
Jakiela, J., Billavara, M., Kaliaperumal, C., & Kumar, A. (2023). An overview of hydrocephalus and shunts used in the clinical management of hydrocephalus. doi:10.1097/preprints.23094161.v1
Singh, N. K., Dhanasekaran, M., & Kumar, A. H. S. (2023). Pharmacology of Berberine and its Metabolites, is it the natures Ozempic or Imatinib?. doi:10.1101/2023.08.05.552100
Dr Stephen Lalor
Mannion, J. M., Segal, B. M., McLoughlin, R. M., & Lalor, S. J. (2023). Respiratory tract<i>Moraxella catarrhalis</i>and<i>Klebsiella pneumoniae</i>can promote pathogenicity of myelin-reactive Th17 cells. doi:10.1101/2023.03.30.534905
Professor David MacHugh
Bhat, S., Elnaggar, M., Hall, T., McHugo, G., Reid, C., MacHugh, D., & Meade, K. (2023). Preferential differential gene expression within the WC1.1<sup>+</sup>?d T cell compartment in cattle naturally infected with<i>Mycobacterium bovis</i>. doi:10.1101/2023.07.21.550071
Hall, T., McHugo, G., Mullen, M., Ward, J., Killick, K., Browne, J., et al. (2023). Integrative and comparative genomic analyses of mammalian macrophage responses to intracellular mycobacterial pathogens. doi:10.1101/2023.07.14.549042
Professor Fionnuala McAuliffe
Moore, R. L., Feehily, C., Killeen, S. L., Yelverton, C. A., Geraghty, A. A., Walsh, C. J., et al. (2023). Ability of Bifidobacterium breve 702258 to transfer from mother to infant: the MicrobeMom randomised controlled trial. doi:10.1101/2023.03.28.23287708
O'Reilly, S. L., Laws, R., Maindal, H. T., Teede, H., Harrison, C., McAuliffe, F. M., et al. (2023). A Complex mHealth Coaching Intervention to Prevent Overweight, Obesity, and Diabetes in High-Risk Women in Antenatal Care: Protocol for a Hybrid Type 2 Effectiveness-Implementation Study (Preprint). doi:10.2196/preprints.51431
Professor Paul McLoughlin
Mthunzi, L., Rowan, S. C., Knaus, U. G., & McLoughlin, P. (2022). Gremlin 1 is required for macrophage M2 polarization. doi:10.1101/2022.12.07.519468
Assoc Professor Eoin O'Cearbhaill
Kho, A. S. K., Béguin, S., O'Cearbhaill, E., & Ní Annaidh, A. (2023). Mechanical Characterisation of Commercial Artificial Skin Models. doi:10.2139/ssrn.4378258
Professor Stefan Oscarson
Hargett, A., Azurmendi, H., Crawford, C., Wear, M., Oscarson, S., Casadevall, A., & Freedberg, D. (2023). The structure of a<i>C. neoformans</i>polysaccharide motif recognized by protective antibodies: A combined NMR and MD study. doi:10.1101/2023.09.06.556507
Dr Emmanuel Reynaud
Reynaud, E., Gutierrez-Heredia, L., Garbett, A., Horn, E., Carlsson, J., & Collins, P. (2023). Rise of the Cybercrabs: how digital cloning in an integrated taxonomic framework can support deep-sea exploration. doi:10.1101/2023.03.16.532964
Andrea, S., Kevin, M., Brian J, R., & Emmanuel G, R. (2023). The Use of Fluid-phase 3D Printing to Pattern Alginate-gelatin Hydrogel Properties to Guide Cell Growth and Behaviour<i>In Vitro</i>. doi:10.1101/2023.07.08.547691
Professor Brian Rodriguez
Andrea, S., Kevin, M., Brian J, R., & Emmanuel G, R. (2023). The Use of Fluid-phase 3D Printing to Pattern Alginate-gelatin Hydrogel Properties to Guide Cell Growth and Behaviour<i>In Vitro</i>. doi:10.1101/2023.07.08.547691
Professor Silke Ryan
O’Donnell, C., Crilly, S., O’Mahony, A., O’Riordan, B., Traynor, M., Gitau, R., et al. (2023). Continuous positive airway pressure but not Liraglutide-mediated weight loss improves early cardiovascular disease in obstructive sleep apnea: Data from a randomized proof-of-concept study. doi:10.1101/2023.05.23.23290424
Professor Denis Shields
Bera, I., O'Sullivan, M., Flynn, D., & Shields, D. C. (2023). Relationship between Protein Digestibility and the Proteolysis of Legume Proteins during Seed Germination. doi:10.20944/preprints202301.0487.v1
Professor Emma Teeling
Déjosez, M., Marin, A., Hughes, G. M., Morales, A. E., Godoy-Parejo, C., Gray, J., et al. (2022). Bat pluripotent stem cells reveal unique entanglement between host and viruses. doi:10.1101/2022.09.23.509261
Hiller, M., Morales, A., Ahmed, A., Hilgers, L., Kirilenko, B., Kontopoulos, D., et al. (2023). Reference-quality bat genomes illuminate adaptations to viral tolerance and disease resistance. doi:10.21203/rs.3.rs-2557682/v1
Uvizl, M., Puechmaille, S., Power, S., Pippel, M., Carthy, S., Haerty, W., et al. (2023). Comparative genome microsynteny illuminates the fast evolution of nuclear mitochondrial segments (NUMTs) in mammals. doi:10.1101/2023.04.20.537758
Paulat, N. S., Storer, J. M., Moreno-Santillán, D. D., Osmanski, A. B., Sullivan, K. A. M., Grimshaw, J. R., et al. (2023). Chiropterans are a hotspot for horizontal transfer of DNA transposons in Mammalia. doi:10.1101/2023.03.23.533946
Schneor, L., Kaltenbach, S., Fridman, S., Nissan, Y., Shuler, G., Fraimovitch, E., et al. (2023). A comparative analysis of the antiviral response in two bat species reveals conserved and divergent innate immune pathways. doi:10.1101/2023.04.23.537989
Professor Desmond Tobin
Casalou, C., Mayatra, J. M., & Tobin, D. J. (2023). Beyond the Epidermal-Melanin-Unit: The Human Scalp Anagen Hair Bulb Is Home to Multiple Melanocyte Subpopulations of Variable Melanogenic Capacity. doi:10.20944/preprints202307.0403.v1

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Professor Fionnuala McAuliffe
Killeen, S. L., Byrne, D. F., Geraghty, A. A., Yelverton, C. A., van Sinderen, D., Cotter, P. D., et al. (2022). Recruiting and Engaging Women of Reproductive Age with Obesity: Insights from A Mixed-Methods Study within A Trial. doi:10.3390/ijerph192113832
8<sup>th</sup> ABM/EABM European Regional Conference May 11–13, 2023 Split, Croatia (2023). doi:10.1089/bfm.2023.29239.abstracts

UCD Conway Institute

UCD Conway Institute - Research Publications 2022/23

UCD Conway Institute

UCD Conway Institute - Research Publications 2022/23

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