UCD Biology & Environmental Science

School of Biology and Environmental Science - Research Publications 2022/23

Below is the list of research publications for the School of Biology and Environmental Science in the academic year 2022/23.



Book

Dr Jan-Robert Baars

Flynn, O., Kelly-Quinn, M., Harlow, L., Baars, J. -R., & Baars, J. -R. (2022). The Friends of the Rye - Celebrating 30 Years of commitment to the Rye Water and its valley. Ireland: Glasseye.

 
Professor Mary Kelly-Quinn

Flynn, O., Kelly-Quinn, M., Harlow, L., Baars, J. -R., & Baars, J. -R. (2022). The Friends of the Rye - Celebrating 30 Years of commitment to the Rye Water and its valley. Ireland: Glasseye.

 

Back to Top

Book Review

Dr Jan-Robert Baars

Baars, J. -R. (2022). British and Irish Stoneflies (Plecoptera): Keys to the adults and larvae. Ireland: Irish Naturalists Journal.

 

Back to Top

Chapter

Professor Thomas Bolger

Bolger, T. (2022). Introduction - The value of local surveys and their contribution to broader ecological research.. In New Survey of Clare Island Volume 10: Zoology (pp. 1-5). Dublin: Royal Irish Academy.

 

Bolger, T. (2022). A Resurvey of the Collembola and Acari (Oribatida and Mesostigmata) of Clare Island.. In New Survey of Clare Island Volume 10: Zoology (pp. 69-78). Dublin: Royal Irish Academy.

 
Dr Tamara Hochstrasser

McKeown, A., Lennon, M., White, R., Garska, J., Istrate, A., Russell, P., & Hochstrasser, T. (2023). Serious Games for Empowering Teenagers: A STEAM Approach to Climate Change Reflection and Communication. In University Initiatives on Climate Change Education and Research (pp. 1-24). Springer Nature Switzerland. doi:10.1007/978-3-031-25960-9_51-1

Available Online
 
Dr Marcin Penk

de Eyto, E., Murphy, C., Broderick, C., Penk, M., Poole, R., Kelly, S., et al. (2023). Land Ocean Aquatic Continuum. In G. Nolan, C. Cusack, & D. Fitzhenry (Eds.), Irish Ocean Climate and Ecosystem Status Report (pp. 101-117). Rinville, Oranmore, Co. Galway: The Marine Institute.

 
Assoc Professor Antoinette Perry

Cosgrave, J. M., & Perry, A. S. (2023). Therapeutic applications of the prostate cancer epigenome. In Epigenetic Cancer Therapy, Second Edition (pp. 301-337). doi:10.1016/B978-0-323-91367-6.00024-6

Available Online
 
Dr Katharina Wollenberg Valero

Glaw, F., Crottini, A., Rakotoarison, A., Scherz, M., Vences, M., Andreone, F., et al. (2022). Amphibians. In S. M. Godman (Ed.), The New Natural History of Madagascar. Princeton, NJ, USA: Princeton University Press.

 

Glaw, F., Vences, M., Raxworthy, C., Brown, J., Crottini, A., D'Cruze, N., et al. (2022). Reptiles. In S. M. Goodman (Ed.), The New Natural History of Madagascar. Princeton, NJ, USA: Princeton University Press.

 

Back to Top

Conference Paper

Dr Nicholas Brereton

Hajjar, R., Gonzalez, E., Fragoso, G., Oliero, M., Alaoui, A. A., Calvé, A., et al. (2022). IDDF2022-ABS-0225 The GUT microbiota modulates colonic healing in patients undergoing surgery for colorectal cancer. In Basic Gastroenterology. BMJ Publishing Group Ltd and British Society of Gastroenterology. doi:10.1136/gutjnl-2022-iddf.72

Available Online
 
Dr Tamara Hochstrasser

Hochstrasser, T., Finkele, K., & Murphy, P. (2022). Towards establishing an Irish National Soil Moisture Monitoring Network. In European Meteorological Society Annual Meeting 2021. Online. doi:10.5194/ems2021-273

Available Online
 

Back to Top

Journal article

Dr Jan-Robert Baars

O'Leary, K., Flynn, O., Swanwick, H., Caplice, M., Baars, J. -R., & Baars, J. -R. (2022). Observations on the New Zealand Land Hopper (Arcitalitrus dorrieni (Hunt, 1925)) in Ireland. Irish Naturalists Journal.

 

Mangan, R., & Baars, J. R. (2023). Risk assessment of the host range of Hydrellia lagarosiphon for the biological control of Lagarosiphon major in Ireland. Biocontrol Science and Technology, 33(7), 681-700. doi:10.1080/09583157.2023.2215993

Available Online
 

Feeley, H., Kennedy, B., Mitchell, R., & Baars, J. -R. (2023). ADULT STONEFLY (PLECOPTERA) RECORDS FROM IRELAND IN 2022. Bulletin of the Irish Biogeographical Society, 46, 25-38.

 

Bommerlund, J., Baars, J. R., Schrøder-Nielsen, A., Brys, R., Mauvisseau, C., de Boer, H. J., & Mauvisseau, Q. (2023). eDNA-based detection as an early warning tool for detecting established and emerging invasive amphipods. Management of Biological Invasions, 14(2), 321-333. doi:10.3391/mbi.2023.14.2.09

Available Online
 
Mr Bernard Ball

Georgieva, M. N., Rimskaya-Korsakova, N. N., Krolenko, V. I., Van Dover, C. L., Amon, D. J., Copley, J. T., et al. (2023). A tale of two tubeworms: taxonomy of vestimentiferans (Annelida: Siboglinidae) from the Mid-Cayman Spreading Centre. Invertebrate Systematics, 37(3), 167-191. doi:10.1071/IS22047

Available Online
 
Dr Chandra Bellasio

Bellasio, C., & Ermakova, M. (2022). Reduction of bundle sheath size boosts cyclic electron flow in C<inf>4</inf> Setaria viridis acclimated to low light. Plant Journal, 111(5), 1223-1237. doi:10.1111/tpj.15915

Available Online
 

Cherelli, S. G., Bellasio, C., Marcati, C. R., Rodrigues dos Santos, T. P., Rodrigues, S. A., Leonel, M., & Ballarin, A. W. (2023). The corewood of 25-year-old Hevea brasiliensis from two rubber plantations has high starch content. European Journal of Wood and Wood Products, 81(4), 847-855. doi:10.1007/s00107-023-01935-6

Available Online
 
Professor Thomas Bolger

Seniczak, A., Seniczak, S., Iturrondobeitia, J. C., Gwiazdowicz, D. J., Waldon-Rudzionek, B., Flatberg, K. I., & Bolger, T. (2022). Mites (Oribatida and Mesostigmata) and vegetation as complementary bioindicators in peatlands. Science of the Total Environment, 851. doi:10.1016/j.scitotenv.2022.158335

Available Online
 

Lindo, Z., Bolger, T., & Caruso, T. (2023). Stochastic processes in the structure and functioning of soil biodiversity. Frontiers in Ecology and Evolution, 11. doi:10.3389/fevo.2023.1055336

Available Online
 
Dr Nicholas Brereton

Selim, Y., Di Lena, É., Abu-Omar, N., Baig, Z., Verhoeff, K., La, J., et al. (2022). 2022 Canadian Surgery Forum Sept. 15–17, 202201. Canadian Journal of Surgery, 65(6 Suppl 2), S33-S111. doi:10.1503/cjs.014322

Available Online
 

Minerbi, A., Gonzalez, E., Brereton, N., Fitzcharles, M. A., Chevalier, S., & Shir, Y. (2023). Altered serum bile acid profile in fibromyalgia is associated with specific gut microbiome changes and symptom severity. Pain, 164(2), E66-E76. doi:10.1097/j.pain.0000000000002694

Available Online
 

Jerbi, A., Kalwahali-Muissa, M., Krygier, R., Johnston, C., Blank, M., Sarrazin, M., et al. (2023). Comparative wood anatomy, composition and saccharification yields of wastewater irrigated willow cultivars at three plantations in Canada and Northern Ireland. Biomass and Bioenergy, 170. doi:10.1016/j.biombioe.2022.106683

Available Online
 

Pedneault, K., Carbajo, J. P., Nicolle, P., Pathak, M., Wilson, N., Campos-Arguedas, F., et al. (2023). Different patterns of temperature impact phenolic derivatives in ripening Vitis sp. berries. Acta Horticulturae, 1368, 61-66. doi:10.17660/ActaHortic.2023.1370.9

Available Online
 

Grenier, V., Gonzalez, E., Brereton, N. J. B., & Pitre, F. E. (2023). Dynamics of bacterial and archaeal communities during horse bedding and green waste composting. PeerJ, 11. doi:10.7717/peerj.15239

Available Online
 

Hajjar, R., Gonzalez, E., Fragoso, G., Oliero, M., Alaoui, A. A., Calvé, A., et al. (2023). Gut microbiota influence anastomotic healing in colorectal cancer surgery through modulation of mucosal proinflammatory cytokines. Gut, 72(6), 1143-1154. doi:10.1136/gutjnl-2022-328389

Available Online
 
Dr Paul Brooks

Brooks, P. R., Browne, M. A., Benedetti-Cecchi, L., Lyons, D. A., & Crowe, T. P. (2023). A response-surface approach into the interactive effects of multiple stressors reveals new insights into complex responses. Frontiers in Marine Science, 10. doi:10.3389/fmars.2023.1169677

Available Online
 

Earp, H. S., George, R., Brooks, P. R., Farrugia Drakard, V., Thompson, B. J., Fisher, B., et al. (2023). The population structure, sex ratio and reproductive potential of limpets (Patella spp.) on natural shores and artificial structures in the Irish Sea. Marine Environmental Research, 184. doi:10.1016/j.marenvres.2022.105853

Available Online
 

Farrugia Drakard, V., Brooks, P. R., & Crowe, T. P. (2023). Colonisation after disturbance on artificial structures: The influence of timing and grazing. Marine Environmental Research, 187. doi:10.1016/j.marenvres.2023.105956

Available Online
 

Farrugia Drakard, V., Evans, A. J., Crowe, T. P., Moore, P. J., Coughlan, J., & Brooks, P. R. (2023). Artificial rockpools: Seaweed colonisation and productivity vary between sites but are consistent across environmental contexts. Marine Environmental Research, 188. doi:10.1016/j.marenvres.2023.106022

Available Online
 

Thompson, B., Brooks, P. R., Farrugia Drakard, V., Kubin, F., Earp, H. S., Alvarez-Cienfuegos, I., et al. (2023). Population structure and reproductive states of the dogwhelk Nucella lapillus differ between artificial structures and natural rocky shores. Marine Environmental Research, 189. doi:10.1016/j.marenvres.2023.106059

Available Online
 

Kelleghan, D. B., O'Callaghan, L., Huggard, F., Crowe, T. P., & Brooks, P. R. (2023). Using valve gape analysis to compare sensitivity of native Mytilus edulis to invasive Magallana gigas when exposed to heavy metal contamination. Marine Environmental Research, 189. doi:10.1016/j.marenvres.2023.106043

Available Online
 
Dr Elizabeth Bruton

Bruton, E. (n.d.). The life and material culture of Hertha Marks Ayrton (1854&amp;ndash;1923): suffragette, physicist, mathematician and inventor. Science Museum Group Journal, 10(10). doi:10.15180/181002

Available Online
 

Bruton, E. (n.d.). Technologies of Romance: Valentine from a Telegraph Clerk ? to a Telegraph Clerk ?: the material culture and standards of early electrical telegraphy. Science Museum Group Journal, 12(12). doi:10.15180/191201

Available Online
 
Ms Martina Caplice

O'Leary, K., Flynn, O., Swanwick, H., Caplice, M., Baars, J. -R., & Baars, J. -R. (2022). Observations on the New Zealand Land Hopper (Arcitalitrus dorrieni (Hunt, 1925)) in Ireland. Irish Naturalists Journal.

 
Assoc Professor Jens Carlsson

Farrell, E. D., Andersson, L., Bekkevold, D., Campbell, N., Carlsson, J., Clarke, M. W., et al. (2022). A baseline for the genetic stock identification of Atlantic herring, Clupea harengus, in ICES Divisions 6.a, 7.b-c. Royal Society Open Science, 9(9). doi:10.1098/rsos.220453

Available Online
 

Tighe, A. J., Grayson, S., Byrne, J., Hintikka, S., Jessen, L., Dempsey, J., et al. (2022). Nanopore metatranscriptomics reveals cryptic catfish species as potential Shigella flexneri vectors in Kenya. Scientific Reports, 12(1). doi:10.1038/s41598-022-17036-y

Available Online
 

Curnick, D. J., Deaville, R., Bortoluzzi, J. R., Cameron, L., Carlsson, J. E. L., Carlsson, J., et al. (2023). Northerly range expansion and first confirmed records of the smalltooth sand tiger shark, Odontaspis ferox, in the United Kingdom and Ireland. Journal of Fish Biology. doi:10.1111/jfb.15529

Available Online
 
Dr Tancredi Caruso

Caruso, T., Clemente, G. V., Rillig, M. C., & Garlaschelli, D. (2022). Fluctuating ecological networks: A synthesis of maximum-entropy approaches for pattern detection and process inference. Methods in Ecology and Evolution, 13(11), 2306-2317. doi:10.1111/2041-210X.13985

Available Online
 

Lastovetsky, O. A., Caruso, T., Brennan, F. P., Wall, D. P., McMahon, S., & Doyle, E. (2022). Evidence of a selective and bi-directional relationship between arbuscular mycorrhizal fungal and bacterial communities co-inhabiting plant roots. Environmental Microbiology, 24(11), 5378-5391. doi:10.1111/1462-2920.16227

Available Online
 

Chomel, M., Lavallee, J. M., Alvarez-Segura, N., Baggs, E. M., Caruso, T., de Castro, F., et al. (2022). Intensive grassland management disrupts below-ground multi-trophic resource transfer in response to drought. Nature Communications, 13(1). doi:10.1038/s41467-022-34449-5

Available Online
 

Maraun, M., Thomas, T., Fast, E., Treibert, N., Caruso, T., Schaefer, I., et al. (2023). New perspectives on soil animal trophic ecology through the lens of C and N stable isotope ratios of oribatid mites. Soil Biology and Biochemistry, 177. doi:10.1016/j.soilbio.2022.108890

Available Online
 

Caruso, T., & Rillig, M. C. (2023). Correction to: A general stochastic model shows that plant-soil feedbacks can buffer plant species from extinction risks in unpredictable environments (Plant and Soil, (2022), 10.1007/s11104-022-05698-6). Plant and Soil, 483(1-2), 725-726. doi:10.1007/s11104-022-05834-2

Available Online
 

Caruso, T., & Rillig, M. C. (2023). A general stochastic model shows that plant-soil feedbacks can buffer plant species from extinction risks in unpredictable environments. Plant and Soil, 485(1-2), 45-56. doi:10.1007/s11104-022-05698-6

Available Online
 
Dr Simone Ciuti

Amin, B., Jennings, D. J., Norman, A., Ryan, A., Ioannidis, V., Magee, A., et al. (2022). Neonate personality affects early-life resource acquisition in a large social mammal. Behavioral Ecology, 33(5), 1025-1035. doi:10.1093/beheco/arac072

Available Online
 

Griffin, L. L., Haigh, A., Amin, B., Faull, J., Norman, A., & Ciuti, S. (2022). Artificial selection in human-wildlife feeding interactions. Journal of Animal Ecology, 91(9), 1892-1905. doi:10.1111/1365-2656.13771

Available Online
 

Murphy, K. J., Morera-Pujol, V., Ryan, E., Byrne, A. W., Breslin, P., & Ciuti, S. (2022). Habitat availability alters the relative risk of a bovine tuberculosis breakdown in the aftermath of a commercial forest clearfell disturbance. Journal of Applied Ecology, 59(9), 2333-2345. doi:10.1111/1365-2664.14233

Available Online
 

Amin, B., Verbeek, L., Haigh, A., Griffin, L. L., & Ciuti, S. (2022). Risk-taking neonates do not pay a survival cost in a free-ranging large mammal, the fallow deer (Dama dama). Royal Society Open Science, 9(9). doi:10.1098/rsos.220578

Available Online
 

McLaughlin, D., Griffin, L. L., Ciuti, S., & Stewart, G. (2022). Wildlife feeding activities induce papillae proliferation in the rumen of fallow deer. Mammal Research, 67(4), 525-530. doi:10.1007/s13364-022-00647-1

Available Online
 

Murphy, K. J., Griffin, L. L., Nolan, G., Haigh, A., Hochstrasser, T., Ciuti, S., & Kane, A. (2022). Applied autoethnography: A method for reporting best practice in ecological and environmental research. Journal of Applied Ecology, 59(11), 2688-2697. doi:10.1111/1365-2664.14252

Available Online
 

Smith, A. F., Ciuti, S., Shamovich, D., Fenchuk, V., Zimmermann, B., & Heurich, M. (2022). Quiet islands in a world of fear: Wolves seek core zones of protected areas to escape human disturbance. Biological Conservation, 276. doi:10.1016/j.biocon.2022.109811

Available Online
 

McLaughlin, D., Griffin, L. L., Ciuti, S., & Stewart, G. (2023). Correction to: Wildlife feeding activities induce papillae proliferation in the rumen of fallow deer (Mammal Research, (2022), 67, 4, (525-530), 10.1007/s13364-022-00647-1). Mammal Research, 68(1), 127. doi:10.1007/s13364-022-00650-6

Available Online
 

Keenan, S., Niedziela, D., Morera-Pujol, V., Franklin, D., Murphy, K. J., Ciuti, S., & McMahon, B. J. (2023). Zoonotic disease classification in wildlife: a theoretical framework for researchers. Mammal Review. doi:10.1111/mam.12329

Available Online
 

Morera-Pujol, V., Mostert, P. S., Murphy, K. J., Burkitt, T., Coad, B., McMahon, B. J., et al. (2023). Bayesian species distribution models integrate presence-only and presence–absence data to predict deer distribution and relative abundance. Ecography, 2023(2). doi:10.1111/ecog.06451

Available Online
 

Griffin, L. L., Haigh, A., Amin, B., Faull, J., Corcoran, F., Baker-Horne, C., & Ciuti, S. (2023). Does artificial feeding impact neonate growth rates in a large free-ranging mammal?. Royal Society Open Science, 10(3). doi:10.1098/rsos.221386

Available Online
 

Murphy, K. J., Roberts, D. R., Jensen, W. F., Nielsen, S. E., Johnson, S. K., Hosek, B. M., et al. (2023). Mule deer fawn recruitment dynamics in an energy disturbed landscape. Ecology and Evolution, 13(4). doi:10.1002/ece3.9976

Available Online
 

Griffin, L. L., & Ciuti, S. (2023). Should we feed wildlife? A call for further research into this recreational activity. Conservation Science and Practice, 5(7). doi:10.1111/csp2.12958

Available Online
 

Griffin, L. L., Nolan, G., Haigh, A., Condon, H., O'Hagan, E., McDonnell, P., et al. (2023). How can we tackle interruptions to human–wildlife feeding management? Adding media campaigns to the wildlife manager's toolbox. People and Nature, 5(4), 1299-1315. doi:10.1002/pan3.10499

Available Online
 
Dr Grace Cott

Burke, S. A., Manahan, J., Eichelmann, E., & Cott, G. M. (2022). Dublin’s saltmarshes contain climate-relevant carbon pools. Frontiers in Marine Science, 9. doi:10.3389/fmars.2022.976457

Available Online
 
Ms Jennifer Coughlan

Farrugia Drakard, V., Evans, A. J., Crowe, T. P., Moore, P. J., Coughlan, J., & Brooks, P. R. (2023). Artificial rockpools: Seaweed colonisation and productivity vary between sites but are consistent across environmental contexts. Marine Environmental Research, 188. doi:10.1016/j.marenvres.2023.106022

Available Online
 
Professor Fiona Doohan

Langridge, P., Alaux, M., Almeida, N. F., Ammar, K., Baum, M., Bekkaoui, F., et al. (2022). Meeting the Challenges Facing Wheat Production: The Strategic Research Agenda of the Global Wheat Initiative. Agronomy, 12(11). doi:10.3390/agronomy12112767

Available Online
 

Vranic, M., Perochon, A., Benbow, H., & Doohan, F. M. (2022). Comprehensive analysis of pathogen-responsive wheat NAC transcription factors: new candidates for crop improvement. G3: Genes, Genomes, Genetics, 12(11). doi:10.1093/g3journal/jkac247

Available Online
 

Deshaies, M., Lamari, N., Ng, C. K. Y., Ward, P., & Doohan, F. M. (2022). The impact of chitosan on the early metabolomic response of wheat to infection by Fusarium graminearum. BMC Plant Biology, 22(1). doi:10.1186/s12870-022-03451-w

Available Online
 

Brennan, L., O'Gorman, A., Barth, S., Cadden, T., Dean, M., Doohan, F., et al. (2022). An innovative food system approach to diversifying protein intake: Protein-I: Shared Island sustainable healthy nutrition. Nutrition Bulletin, 47(4), 516-523. doi:10.1111/nbu.12590

Available Online
 

Kahla, A., Verheecke-Vaessen, C., Delpino-Deelias, M., Gutierrez-Pozo, M., Medina, A., Magan, N., & Doohan, F. (2023). Acclimatisation of Fusarium langsethiae, F. poae and F. sporotrichioides to elevated CO<inf>2</inf>: Impact on fungal growth and mycotoxin production on oat-based media. International Journal of Food Microbiology, 394. doi:10.1016/j.ijfoodmicro.2023.110176

Available Online
 

Vranic, M., Perochon, A., & Doohan, F. M. (2023). Transcriptional Profiling Reveals the Wheat Defences against Fusarium Head Blight Disease Regulated by a NAC Transcription Factor. Plants, 12(14). doi:10.3390/plants12142708

Available Online
 
Professor Evelyn Doyle

Zhong, C., Lyons, T., Heussaff, O., Doyle, E., O'Hara, E., Waters, S. M., et al. (2022). Localization of urea transporter B in the developing bovine rumen. Animal Nutrition, 10, 216-222. doi:10.1016/j.aninu.2022.03.006

Available Online
 

Lastovetsky, O. A., Caruso, T., Brennan, F. P., Wall, D. P., McMahon, S., & Doyle, E. (2022). Evidence of a selective and bi-directional relationship between arbuscular mycorrhizal fungal and bacterial communities co-inhabiting plant roots. Environmental Microbiology, 24(11), 5378-5391. doi:10.1111/1462-2920.16227

Available Online
 
Dr Elke Eichelmann

Shahan, J., Chu, H., Windham-Myers, L., Matsumura, M., Carlin, J., Eichelmann, E., et al. (2022). Combining Eddy Covariance and Chamber Methods to Better Constrain CO<inf>2</inf> and CH<inf>4</inf> Fluxes Across a Heterogeneous Restored Tidal Wetland. Journal of Geophysical Research: Biogeosciences, 127(9). doi:10.1029/2022JG007112

Available Online
 

Stapleton, A., Eichelmann, E., & Roantree, M. (2022). A framework for constructing machine learning models with feature set optimisation for evapotranspiration partitioning. Applied Computing and Geosciences, 16. doi:10.1016/j.acags.2022.100105

Available Online
 

Burke, S. A., Manahan, J., Eichelmann, E., & Cott, G. M. (2022). Dublin’s saltmarshes contain climate-relevant carbon pools. Frontiers in Marine Science, 9. doi:10.3389/fmars.2022.976457

Available Online
 
Dr Wieland Fricke

Sharipova, G., Ivanov, R., Veselov, D., Akhiyarova, G., Seldimirova, O., Galin, I., et al. (2022). Effect of Salinity on Stomatal Conductance, Leaf Hydraulic Conductance, HvPIP2 Aquaporin, and Abscisic Acid Abundance in Barley Leaf Cells. International Journal of Molecular Sciences, 23(22). doi:10.3390/ijms232214282

Available Online
 

Lu, Y., Jeffers, R., Raju, A., Kenny, T., Ratchanniyasamu, E., & Fricke, W. (2023). Does night-time transpiration provide any benefit to wheat (Triticum aestivum L.) plants which are exposed to salt stress?. Physiologia Plantarum, 175(1). doi:10.1111/ppl.13839

Available Online
 

Lu, Y., & Fricke, W. (2023). Changes in root hydraulic conductivity in wheat (Triticum aestivum L.) in response to salt stress and day/night can best be explained through altered activity of aquaporins. Plant Cell and Environment, 46(3), 747-763. doi:10.1111/pce.14535

Available Online
 

Lu, Y., & Fricke, W. (2023). Salt Stress—Regulation of Root Water Uptake in a Whole-Plant and Diurnal Context. International Journal of Molecular Sciences, 24(9). doi:10.3390/ijms24098070

Available Online
 

Lu, Y., & Fricke, W. (2023). Diurnal changes in apoplast bypass flow of water and ions in salt-stressed wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.). Physiologia Plantarum, 175(4). doi:10.1111/ppl.13955

Available Online
 
Dr Courtney Gorman

Hulsey, C. D., & Gorman, C. E. (2023). Coevolution of the premaxillary ascending process and jaw protrusion in Lake Malawi cichlid fishes. Hydrobiologia, 850(10-11), 2231-2240. doi:10.1007/s10750-022-04949-y

Available Online
 
Dr Tamara Hochstrasser

Murphy, K. J., Griffin, L. L., Nolan, G., Haigh, A., Hochstrasser, T., Ciuti, S., & Kane, A. (2022). Applied autoethnography: A method for reporting best practice in ecological and environmental research. Journal of Applied Ecology, 59(11), 2688-2697. doi:10.1111/1365-2664.14252

Available Online
 
Dr Grace Hoysted

Hoysted, G. A., Field, K. J., Sinanaj, B., Bell, C. A., Bidartondo, M. I., & Pressel, S. (2023). Direct nitrogen, phosphorus and carbon exchanges between Mucoromycotina ‘fine root endophyte’ fungi and a flowering plant in novel monoxenic cultures. New Phytologist, 238(1), 70-79. doi:10.1111/nph.18630

Available Online
 

Durant, E., Hoysted, G. A., Howard, N., Sait, S. M., Childs, D. Z., Johnson, D., & Field, K. J. (2023). Herbivore-driven disruption of arbuscular mycorrhizal carbon-for-nutrient exchange is ameliorated by neighboring plants. Current Biology, 33(12), 2566-2573.e4. doi:10.1016/j.cub.2023.05.033

Available Online
 
Mr Zixia Huang

Zeng, Z., Jiang, C., Tan, Q., Tang, B., & Huang, Z. (2022). Larvae of a marine gastropod and a marine bivalve share common gene expression signatures during metamorphic competence. Marine Biology, 169(9). doi:10.1007/s00227-022-04106-y

Available Online
 
Dr Graham Hughes

Vernes, S. C., Devanna, P., Hörpel, S. G., Alvarez van Tussenbroek, I., Firzlaff, U., Hagoort, P., et al. (2022). The pale spear-nosed bat: A neuromolecular and transgenic model for vocal learning. Annals of the New York Academy of Sciences, 1517(1), 125-142. doi:10.1111/nyas.14884

Available Online
 

Castellanos, F. X., Moreno-Santillán, D., Hughes, G. M., Paulat, N. S., Sipperly, N., Brown, A. M., et al. (2023). The evolution of antimicrobial peptides in Chiroptera. Frontiers in Immunology, 14. doi:10.3389/fimmu.2023.1250229

Available Online
 

Waterhouse, R., Adam-Blondon, A. -F., Balech, B., Barta, E., Heil, K., Hughes, G., et al. (2023). The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity. doi:10.12688/f1000research.133724.1

Available Online
 

Déjosez, M., Marin, A., Hughes, G. M., Morales, A. E., Godoy-Parejo, C., Gray, J. L., et al. (2023). Bat pluripotent stem cells reveal unusual entanglement between host and viruses. Cell, 186(5), 957-974.e28. doi:10.1016/j.cell.2023.01.011

Available Online
 

Xue, J. R., Mouri, K., Garcia, M. F., Akers, J. F., Noble, M., Noonan, J. P., et al. (2023). The functional and evolutionary impacts of human-specific deletions in conserved elements. Science, 380(6643). doi:10.1126/SCIENCE.ABN2253

Available Online
 

Supple, M. A., Subramanian, A., Mudide, A., Serres-Armero, A., Fuentes, V. M., Foley, K., et al. (2023). The contribution of historical processes to contemporary extinction risk in placental mammals. Science, 380(6643). doi:10.1126/SCIENCE.ABN5856

Available Online
 

Moon, K. L., Huson, H. J., Morrill, K., Wang, M. S., Srikanth, K., Svenson, G. J., et al. (2023). Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs. Science, 380(6643). doi:10.1126/SCIENCE.ABN5887

Available Online
 

Goodman, D. B., Lind, A. L., Redlich, R. W., Brown, A. R., Teeling, E. C., Andrews, G., et al. (2023). Evolutionary constraint and innovation across hundreds of placental mammals. Science, 380(6643). doi:10.1126/SCIENCE.ABN3943

Available Online
 

Sakthikumar, S., Nordin, J., Roy, A., Xue, J., Yao, S., Sun, Q., et al. (2023). Leveraging base-pair mammalian constraint to understand genetic variation and human disease. Science, 380(6643). doi:10.1126/SCIENCE.ABN2937

Available Online
 

Kirilenko, B. M., Munegowda, C., Osipova, E., Jebb, D., Sharma, V., Blumer, M., et al. (2023). Integrating gene annotation with orthology inference at scale. Science, 380(6643). doi:10.1126/SCIENCE.ABN3107

Available Online
 

Osmanski, A. B., Korstian, J., Grimshaw, J. R., Halsey, M., Moreno-Santillán, D. D., Crookshanks, C., et al. (2023). Insights into mammalian TE diversity through the curation of 248 genome assemblies. Science, 380(6643). doi:10.1126/SCIENCE.ABN1430

Available Online
 

Kaplow, I. M., Sestili, H. H., Prasad, K., Brown, A. R., Foley, K., Pfenning, A. R., et al. (2023). Relating enhancer genetic variation across mammals to complex phenotypes using machine learning. Science, 380(6643). doi:10.1126/SCIENCE.ABM7993

Available Online
 

Whalen, S., Inoue, F., Przytycki, P. F., Fair, T., Deng, C., Steyert, M., et al. (2023). Three-dimensional genome rewiring in loci with human accelerated regions. Science, 380(6643). doi:10.1126/SCIENCE.ABM1696

Available Online
 

Phalke, N., Andrews, G., Armstrong, J. C., Bianchi, M., Birren, B. W., Bredemeyer, K. R., et al. (2023). Mammalian evolution of human cis-regulatory elements and transcription factor binding sites. Science, 380(6643). doi:10.1126/SCIENCE.ABN7930

Available Online
 

Shatilovich, A., Gade, V. R., Pippel, M., Hoffmeyer, T. T., Tchesunov, A. V., Stevens, L., et al. (2023). A novel nematode species from the Siberian permafrost shares adaptive mechanisms for cryptobiotic survival with C. elegans dauer larva. PLoS Genetics, 19(7). doi:10.1371/journal.pgen.1010798

Available Online
 
Dr Darrin Hulsey

Masonick, P., Meyer, A., & Hulsey, C. D. (2023). A Kiss of Deep Homology: Partial Convergence in the Genomic Basis of Hypertrophied Lips in Cichlid Fish and Human Cleft Lip. Genome Biology and Evolution, 15(5). doi:10.1093/gbe/evad072

Available Online
 

Hulsey, C. D., & Gorman, C. E. (2023). Coevolution of the premaxillary ascending process and jaw protrusion in Lake Malawi cichlid fishes. Hydrobiologia, 850(10-11), 2231-2240. doi:10.1007/s10750-022-04949-y

Available Online
 
Dr Israel Ikoyi

Deinert, L., Ikoyi, I., Egeter, B., Forrestal, P., & Schmalenberger, A. (2023). Short-Term Impact of Recycling-Derived Fertilizers on Their P Supply for Perennial Ryegrass (Lolium perenne). Plants, 12(15). doi:10.3390/plants12152762

Available Online
 
Dr Anne Jansen-Willems

Xie, L., Liu, D., Müller, C., Jansen-Willems, A., Chen, Z., Niu, Y., et al. (2022). Brachiaria humidicola Cultivation Enhances Soil Nitrous Oxide Emissions from Tropical Grassland by Promoting the Denitrification Potential: A <sup>15</sup>N Tracing Study. Agriculture (Switzerland), 12(11). doi:10.3390/agriculture12111940

Available Online
 

Zheng, J., Fujii, K., Koba, K., Wanek, W., Müller, C., Jansen-Willems, A. B., et al. (2023). Revisiting process-based simulations of soil nitrite dynamics: Tighter cycling between nitrite and nitrate than considered previously. Soil Biology and Biochemistry, 178. doi:10.1016/j.soilbio.2023.108958

Available Online
 
Professor Lars Jermiin

Salzberg, L. I., Martos, A. A. R., Lombardi, L., Jermiin, L. S., Blanco, A., Byrne, K. P., & Wolfe, K. H. (2022). A widespread inversion polymorphism conserved among Saccharomyces species is caused by recurrent homogenization of a sporulation gene family. PLoS Genetics, 18(11). doi:10.1371/journal.pgen.1010525

Available Online
 

Waterhouse, R., Adam-Blondon, A. -F., Balech, B., Barta, E., Heil, K., Hughes, G., et al. (2023). The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity. doi:10.12688/f1000research.133724.1

Available Online
 
Dr Rory Johnson

Esposito, R., Polidori, T., Meise, D. F., Pulido-Quetglas, C., Chouvardas, P., Forster, S., et al. (2022). Multi-hallmark long noncoding RNA maps reveal non-small cell lung cancer vulnerabilities. Cell Genomics, 2(9). doi:10.1016/j.xgen.2022.100171

Available Online
 

Paczkowska, M., Barenboim, J., Sintupisut, N., Fox, N. S., Zhu, H., Abd-Rabbo, D., et al. (2022). Author Correction: Integrative pathway enrichment analysis of multivariate omics data (Nature Communications, (2020), 11, 1, (735), 10.1038/s41467-019-13983-9). Nature Communications, 13(1). doi:10.1038/s41467-022-32342-9

Available Online
 

Shuai, S., Abascal, F., Amin, S. B., Bader, G. D., Bandopadhayay, P., Barenboim, J., et al. (2022). Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower (Nature Communications, (2020), 11, 1, (734), 10.1038/s41467-019-13929-1). Nature Communications, 13(1). doi:10.1038/s41467-022-32343-8

Available Online
 

Cmero, M., Yuan, K., Ong, C. S., Schröder, J., Adams, D. J., Anur, P., et al. (2022). Author Correction: Inferring structural variant cancer cell fraction (Nature Communications, (2020), 11, 1, (730), 10.1038/s41467-020-14351-8). Nature Communications, 13(1). doi:10.1038/s41467-022-32338-5

Available Online
 

Vancura, A., Gutierrez, A. H., Hennig, T., Pulido-Quetglas, C., Slack, F. J., Johnson, R., & Haefliger, S. (2022). Is Evolutionary Conservation a Useful Predictor for Cancer Long Noncoding RNAs? Insights from the Cancer LncRNA Census 3. Non-coding RNA, 8(6). doi:10.3390/ncrna8060082

Available Online
 

Arnan, C., Ullrich, S., Pulido-Quetglas, C., Nurtdinov, R., Esteban, A., Blanco-Fernandez, J., et al. (2022). Paired guide RNA CRISPR-Cas9 screening for protein-coding genes and lncRNAs involved in transdifferentiation of human B-cells to macrophages. BMC Genomics, 23(1). doi:10.1186/s12864-022-08612-7

Available Online
 

Rubanova, Y., Shi, R., Harrigan, C. F., Li, R., Wintersinger, J., Sahin, N., et al. (2022). Author Correction: Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig (Nature Communications, (2020), 11, 1, (731), 10.1038/s41467-020-14352-7). Nature Communications, 13(1). doi:10.1038/s41467-022-32336-7

Available Online
 

Reyna, M. A., Haan, D., Paczkowska, M., Verbeke, L. P. C., Vazquez, M., Kahraman, A., et al. (2022). Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes (Nature Communications, (2020), 11, 1, (729), 10.1038/s41467-020-14367-0). Nature Communications, 13(1). doi:10.1038/s41467-022-32334-9

Available Online
 

Zhang, Y., Chen, F., Fonseca, N. A., He, Y., Fujita, M., Nakagawa, H., et al. (2022). Author Correction: High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations (Nature Communications, (2020), 11, 1, (736), 10.1038/s41467-019-13885-w). Nature Communications, 13(1). doi:10.1038/s41467-022-32333-w

Available Online
 

Grapotte, M., Saraswat, M., Bessière, C., Menichelli, C., Ramilowski, J. A., Severin, J., et al. (2022). Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (Nature Communications, (2021), 12, 1, (3297), 10.1038/s41467-021-23143-7). Nature Communications, 13(1). doi:10.1038/s41467-022-28758-y

Available Online
 

Plaisance, I., Chouvardas, P., Sun, Y., Nemir, M., Aghagolzadeh, P., Aminfar, F., et al. (2022). Alternative splicing of a transposable element into the human long noncoding RNA CARMEN is a switch for cardiac precursor cell specification. Journal of Molecular and Cellular Cardiology, 173, S182. doi:10.1016/j.yjmcc.2022.08.344

Available Online
 

Aghagolzadeh, P., Plaisance, I., Bernasconi, R., Sarre, A., Nemir, M., Quetglas, C. P., et al. (2022). Single-cell analysis of the long noncoding RNA transcriptome in cardiac fibroblasts identifies FIXER, a novel therapeutic target for fibrosis in the damaged heart. Journal of Molecular and Cellular Cardiology, 173, S39-S40. doi:10.1016/j.yjmcc.2022.08.079

Available Online
 

Carlevaro-Fita, J., Lanzós, A., Feuerbach, L., Hong, C., Mas-Ponte, D., Pedersen, J. S., & Johnson, R. (2022). Erratum: Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis (Communications biology (2020) 3 1 (56)). Communications biology, 5(1), 1347. doi:10.1038/s42003-022-03769-z

Available Online
 

Frankish, A., Carbonell-Sala, S., Diekhans, M., Jungreis, I., Loveland, J. E., Mudge, J. M., et al. (2023). GENCODE: reference annotation for the human and mouse genomes in 2023. Nucleic Acids Research, 51(D1), D942-D949. doi:10.1093/nar/gkac1071

Available Online
 

Rheinbay, E., Nielsen, M. M., Abascal, F., Wala, J. A., Shapira, O., Tiao, G., et al. (2023). Erratum: Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes (Nature (2020) 578 7793 (102-111)). Nature, 614(7948), E40. doi:10.1038/s41586-022-05599-9

Available Online
 

Aaltonen, L. A., Abascal, F., Abeshouse, A., Aburatani, H., Adams, D. J., Agrawal, N., et al. (2023). Author Correction: Pan-cancer analysis of whole genomes (Nature, (2020), 578, 7793, (82-93), 10.1038/s41586-020-1969-6). Nature, 614(7948), E39. doi:10.1038/s41586-022-05598-w

Available Online
 

Plaisance, I., Chouvardas, P., Sun, Y., Nemir, M., Aghagolzadeh, P., Aminfar, F., et al. (2023). A transposable element into the human long noncoding RNA CARMEN is a switch for cardiac precursor cell specification. Cardiovascular Research, 119(6), 1361-1376. doi:10.1093/cvr/cvac191

Available Online
 

Mattick, J. S., Amaral, P. P., Carninci, P., Carpenter, S., Chang, H. Y., Chen, L. L., et al. (2023). Long non-coding RNAs: definitions, functions, challenges and recommendations. Nature Reviews Molecular Cell Biology, 24(6), 430-447. doi:10.1038/s41580-022-00566-8

Available Online
 

Zapatka, M., Borozan, I., Brewer, D. S., Iskar, M., Grundhoff, A., Alawi, M., et al. (2023). Author Correction: The landscape of viral associations in human cancers (Nature Genetics, (2020), 52, 3, (320-330), 10.1038/s41588-019-0558-9). Nature Genetics, 55(6), 1077. doi:10.1038/s41588-023-01316-y

Available Online
 

Aghagolzadeh, P., Plaisance, I., Bernasconi, R., Treibel, T. A., Pulido Quetglas, C., Wyss, T., et al. (2023). Assessment of the Cardiac Noncoding Transcriptome by Single-Cell RNA Sequencing Identifies FIXER, a Conserved Profibrogenic Long Noncoding RNA. Circulation, 148(9), 778-797. doi:10.1161/CIRCULATIONAHA.122.062601

Available Online
 
Dr Julia Jones

Franchini, P., Fruciano, C., Wood, T. J., Shastry, V., Goulson, D., Hughes, W. O. H., & Jones, J. C. (2023). Limited introgression from non-native commercial strains and signatures of adaptation in the key pollinator Bombus terrestris. Molecular Ecology. doi:10.1111/mec.17151

Available Online
 

Díaz, M. A., O’Connell, D. P., Jordan, S., O’Connor, C., Martin, P., Jones, J. C., & Garvey, J. (2023). Analysis of Pesticide Levels in Honey and Pollen from Irish Honey Bee Colonies Using a Modified Dutch Mini-Luke Method with Gas and Liquid Chromatography-Tandem Mass Spectrometry Detection. Journal of Agricultural and Food Chemistry, 71(34), 12657-12667. doi:10.1021/acs.jafc.3c02250

Available Online
 
Dr Joanna Kacprzyk

Schwarze, J., Carolan, J. C., Stewart, G. S., McCabe, P. F., & Kacprzyk, J. (2023). The boundary of life and death: changes in mitochondrial and cytosolic proteomes associated with programmed cell death of Arabidopsis thaliana suspension culture cells. Frontiers in Plant Science, 14. doi:10.3389/fpls.2023.1194866

Available Online
 

Sherwood, O. L., Carroll, R., Burke, S., McCabe, P. F., & Kacprzyk, J. (2023). A simple and cost-effective method for studying anoxia tolerance in plants. Applications in Plant Sciences, 11(1). doi:10.1002/aps3.11509

Available Online
 

Kacprzyk, J., Gunawardena, A. H. L. A. N., Bouteau, F., & McCabe, P. F. (2023). Editorial: Plant programmed cell death revisited, volume II. Frontiers in Plant Science, 14. doi:10.3389/fpls.2023.1281902

Available Online
 

Kacprzyk, J., Clune, S., Clark, C., & Kane, A. (2023). Making a greener planet: nature documentaries promote plant awareness. Annals of Botany, 131(2), 255-260. doi:10.1093/aob/mcac149

Available Online
 
Dr Adam Kane

Murphy, K. J., Griffin, L. L., Nolan, G., Haigh, A., Hochstrasser, T., Ciuti, S., & Kane, A. (2022). Applied autoethnography: A method for reporting best practice in ecological and environmental research. Journal of Applied Ecology, 59(11), 2688-2697. doi:10.1111/1365-2664.14252

Available Online
 

Doyle, S., Cabot, D., Griffin, L., Kane, A., Colhoun, K., Redmond, C., et al. (2023). Home range of a long-distance migrant, the Greenland Barnacle Goose Branta leucopsis, throughout the annual cycle. Bird Study, 70(1-2), 37-46. doi:10.1080/00063657.2023.2191924

Available Online
 

Kendall, C. J., Bracebridge, C., Lynch, E. C., Mgumba, M., Monadjem, A., Nicholas, A., & Kane, A. (2023). Value of combining transect counts and telemetry data to determine short-term population trends in a globally threatened species. Conservation Biology. doi:10.1111/cobi.14146

Available Online
 

Kane, A., & Amin, B. (2023). Amending the literature through version control. Biology Letters, 19(1). doi:10.1098/rsbl.2022.0463

Available Online
 

Kane, A., Healy, K., & Ruxton, G. D. (2023). Was Allosaurus really predominantly a scavenger?. Ecological Modelling, 476. doi:10.1016/j.ecolmodel.2022.110247

Available Online
 

Kacprzyk, J., Clune, S., Clark, C., & Kane, A. (2023). Making a greener planet: nature documentaries promote plant awareness. Annals of Botany, 131(2), 255-260. doi:10.1093/aob/mcac149

Available Online
 

Monadjem, A., Healy, K., Guillerme, T., & Kane, A. (2023). Dispersal ability is associated with contrasting patterns of beta diversity in African small mammal communities. Journal of Biogeography, 50(3), 539-550. doi:10.1111/jbi.14532

Available Online

Clark, B. L., Carneiro, A. P. B., Pearmain, E. J., Rouyer, M. M., Clay, T. A., Cowger, W., et al. (2023). Global assessment of marine plastic exposure risk for oceanic birds. Nature communications, 14(1), 3665. doi:10.1038/s41467-023-38900-z

Available Online

Griffin, L. L., Nolan, G., Haigh, A., Condon, H., O'Hagan, E., McDonnell, P., et al. (2023). How can we tackle interruptions to human–wildlife feeding management? Adding media campaigns to the wildlife manager's toolbox. People and Nature, 5(4), 1299-1315. doi:10.1002/pan3.10499

Available Online
Professor Mary Kelly-Quinn

Rodríguez-González, P. M., Abraham, E., Aguiar, F., Andreoli, A., Baležentiene, L., Berisha, N., et al. (2022). Bringing the margin to the focus: 10 challenges for riparian vegetation science and management. Wiley Interdisciplinary Reviews: Water, 9(5). doi:10.1002/wat2.1604

Available Online

Alimpic, F., Milovanovic, J., Pielech, R., Hinkov, G., Jansson, R., Dufour, S., et al. (2022). The status and role of genetic diversity of trees for the conservation and management of riparian ecosystems: A European experts' perspective. Journal of Applied Ecology, 59(10), 2476-2485. doi:10.1111/1365-2664.14247

Available Online

Farrell, C. A., Coleman, L., Norton, D., Kelly-Quinn, M., Kinsella, S., Obst, C., et al. (2022). Applying ecosystem accounting to develop a risk register for peatlands and inform restoration targets at catchment scale: a case study from the European region. Restoration Ecology, 30(8). doi:10.1111/rec.13632

Available Online

Tighe, A. J., Grayson, S., Byrne, J., Hintikka, S., Jessen, L., Dempsey, J., et al. (2022). Nanopore metatranscriptomics reveals cryptic catfish species as potential Shigella flexneri vectors in Kenya. Scientific Reports, 12(1). doi:10.1038/s41598-022-17036-y

Available Online

Penk, M. R., Bruen, M., Feld, C. K., Piggott, J. J., Christie, M., Bullock, C., & Kelly-Quinn, M. (2022). Using weighted expert judgement and nonlinear data analysis to improve Bayesian belief network models for riverine ecosystem services. Science of the Total Environment, 851. doi:10.1016/j.scitotenv.2022.158065

Available Online

Melaku, A., Addis, T., Mengistie, B., Kanno, G. G., Adane, M., Kelly-Quinn, M., et al. (2023). Menstrual hygiene management practices and determinants among schoolgirls in Addis Ababa, Ethiopia: The urgency of tackling bottlenecks - Water and sanitation services. Heliyon, 9(5). doi:10.1016/j.heliyon.2023.e15893

Available Online
Dr Dorota Kolbuk

Gorzelak, P., Kolbuk, D., Stolarski, J., Bacal, P., Januszewicz, B., Duda, P., et al. (2023). A Devonian crinoid with a diamond microlattice. Proceedings of the Royal Society B: Biological Sciences, 290(1995). doi:10.1098/rspb.2023.0092

Available Online

Salamon, M. A., Brachaniec, T., Paszcza, K., Kolbuk, D., & Gorzelak, P. (2023). The role of mass extinction events in shaping the body-size dynamics of fossil crinoids. Palaeogeography, Palaeoclimatology, Palaeoecology, 622. doi:10.1016/j.palaeo.2023.111593

Available Online
Avraam Koskosidis

Papathanasiou, F., Ninou, E., Mylonas, I., Baxevanos, D., Papadopoulou, F., Avdikos, I., et al. (2022). The Evaluation of Common Bean (Phaseolus vulgaris L.) Genotypes under Water Stress Based on Physiological and Agronomic Parameters. Plants, 11(18). doi:10.3390/plants11182432

Available Online

Annicchiarico, P., de Buck, A. J., Vlachostergios, D. N., Heupink, D., Koskosidis, A., Nazzicari, N., & Crosta, M. (2023). White Lupin Adaptation to Moderately Calcareous Soils: Phenotypic Variation and Genome-Enabled Prediction. Plants, 12(5). doi:10.3390/plants12051139

Available Online
Dr Olga Lastovetsky

Lastovetsky, O. A., Caruso, T., Brennan, F. P., Wall, D. P., McMahon, S., & Doyle, E. (2022). Evidence of a selective and bi-directional relationship between arbuscular mycorrhizal fungal and bacterial communities co-inhabiting plant roots. Environmental Microbiology, 24(11), 5378-5391. doi:10.1111/1462-2920.16227

Available Online
Dr Guerrino Macori

Mitchell, M., Nguyen, S. V., MacOri, G., Bolton, D., McMullan, G., Drudy, D., & Fanning, S. (2022). Clostridioides difficile as a Potential Pathogen of Importance to One Health: A Review. Foodborne Pathogens and Disease, 19(12), 806-816. doi:10.1089/fpd.2022.0037

Available Online

Zhu, X., Patange, A. D., Macori, G., Sun, D. W., & Tiwari, B. K. (2022). Impact of high pressure treatment on shelf life and microbial profile of wild harvested Ascophyllum nodosum and aquacultured Alaria esculenta during storage. LWT, 170. doi:10.1016/j.lwt.2022.114022

Available Online

Wall, K., Macori, G., Koolman, L., Li, F., & Fanning, S. (n.d.). Klebsiella, a Hitherto Underappreciated Zoonotic Pathogen of Importance to One Health: A Short Review. Zoonoses, 3(1). doi:10.15212/zoonoses-2023-0016

Available Online

Russell, T., Macori, G., Russell, L., Mulcahy, G., Sammin, D., Fanning, S., & Barry, G. (2023). Persistence and recovery of SARS-CoV-2 from abiotic and biotic surfaces found in meat processing plants. Journal of Food Safety. doi:10.1111/jfs.13086

Available Online
Dr Rainer Melzer

Schilling, S., Melzer, R., Dowling, C. A., Shi, J., Muldoon, S., & McCabe, P. F. (2023). A protocol for rapid generation cycling (speed breeding) of hemp (Cannabis sativa) for research and agriculture. Plant Journal, 113(3), 437-445. doi:10.1111/tpj.16051

Available Online

Melzer, R. (2023). Flowering Newsletter 2023. Journal of Experimental Botany, 74(15), 4291-4292. doi:10.1093/jxb/erad258

Available Online
Dr Virginia Morera-Pujol

Murphy, K. J., Morera-Pujol, V., Ryan, E., Byrne, A. W., Breslin, P., & Ciuti, S. (2022). Habitat availability alters the relative risk of a bovine tuberculosis breakdown in the aftermath of a commercial forest clearfell disturbance. Journal of Applied Ecology, 59(9), 2333-2345. doi:10.1111/1365-2664.14233

Available Online

Morera-Pujol, V., Catry, P., Magalhães, M., Péron, C., Reyes-González, J. M., Granadeiro, J. P., et al. (2023). Methods to detect spatial biases in tracking studies caused by differential representativeness of individuals, populations and time. Diversity and Distributions, 29(1), 19-38. doi:10.1111/ddi.13642

Available Online

Keenan, S., Niedziela, D., Morera-Pujol, V., Franklin, D., Murphy, K. J., Ciuti, S., & McMahon, B. J. (2023). Zoonotic disease classification in wildlife: a theoretical framework for researchers. Mammal Review. doi:10.1111/mam.12329

Available Online

Morera-Pujol, V., Mostert, P. S., Murphy, K. J., Burkitt, T., Coad, B., McMahon, B. J., et al. (2023). Bayesian species distribution models integrate presence-only and presence–absence data to predict deer distribution and relative abundance. Ecography, 2023(2). doi:10.1111/ecog.06451

Available Online
Professor Christoph Mueller

He, M., Xin, X., Meng, L., Yan, X., Zhao, C., Cai, Z., et al. (2023). Long-term appropriate N management can continuously enhance gross N mineralization rates and crop yields in a maize-wheat rotation system. Biology and Fertility of Soils, 59(5), 501-511. doi:10.1007/s00374-021-01595-9

Available Online
Dr Sonia Negrao

Langan, P., Bernád, V., Walsh, J., Henchy, J., Khodaeiaminjan, M., Mangina, E., & Negrão, S. (2022). Phenotyping for waterlogging tolerance in crops: current trends and future prospects. Journal of Experimental Botany, 73(15), 5149-5169. doi:10.1093/jxb/erac243

Available Online
Assoc Professor Carl Ng

Deshaies, M., Lamari, N., Ng, C. K. Y., Ward, P., & Doohan, F. M. (2022). The impact of chitosan on the early metabolomic response of wheat to infection by Fusarium graminearum. BMC Plant Biology, 22(1). doi:10.1186/s12870-022-03451-w

Available Online
Dr Darren O'Connell

O'Connell, D. P., Kelly, D. J., Akbar, P. G., Monkhouse, J., Kelly, S. B. A., Simcox, W., et al. (2022). Breeding records of the birds of south-east Sulawesi, Indonesia: a collation of observations encompassing nearly 20 years of research in Wallacea. Bulletin of the British Ornithologists' Club, 142(3), 278-301. doi:10.25226/bboc.v142i3.2022.a2

Available Online

Struebig, M. J., Aninta, S. G., Beger, M., Bani, A., Barus, H., Brace, S., et al. (2022). Safeguarding Imperiled Biodiversity and Evolutionary Processes in the Wallacea Center of Endemism. BioScience, 72(11), 1118-1130. doi:10.1093/biosci/biac085

Available Online

Csergo, A. M., Healy, K., O'Connell, D. P., Baudraz, M. E. A., Kelly, D. J., Ó Marcaigh, F., et al. (2023). Spatial phenotypic variability is higher between island populations than between mainland populations worldwide. Ecography. doi:10.1111/ecog.06787

Available Online

Ross, S. R. P. J., O'Connell, D. P., Deichmann, J. L., Desjonquères, C., Gasc, A., Phillips, J. N., et al. (2023). Passive acoustic monitoring provides a fresh perspective on fundamental ecological questions. Functional Ecology, 37(4), 959-975. doi:10.1111/1365-2435.14275

Available Online

Marcaigh, F., Kelly, D. J., O’Connell, D. P., Analuddin, K., Karya, A., McCloughan, J., et al. (2023). Small islands and large biogeographic barriers have driven contrasting speciation patterns in Indo-Pacific sunbirds (Aves: Nectariniidae). Zoological Journal of the Linnean Society, 198(1), 72-92. doi:10.1093/zoolinnean/zlac081

Available Online

Irham, M., Prawiradilaga, D. M., Menner, J. K., O'Connell, D. P., Kelly, D. J., Analuddin, K., et al. (2023). A distinct new species of Zosterops white-eye from the Sulawesi region, Indonesia. Ibis, 165(3), 808-816. doi:10.1111/ibi.13148

Available Online

Díaz, M. A., O’Connell, D. P., Jordan, S., O’Connor, C., Martin, P., Jones, J. C., & Garvey, J. (2023). Analysis of Pesticide Levels in Honey and Pollen from Irish Honey Bee Colonies Using a Modified Dutch Mini-Luke Method with Gas and Liquid Chromatography-Tandem Mass Spectrometry Detection. Journal of Agricultural and Food Chemistry, 71(34), 12657-12667. doi:10.1021/acs.jafc.3c02250

Available Online
Dr Marcin Penk

Penk, M. R., & Perrin, P. M. (2022). Variability of Plant and Surface Soil Carbon Concentration Among Saltmarsh Habitats in Ireland. Estuaries and Coasts, 45(6), 1631-1645. doi:10.1007/s12237-021-01042-w

Available Online

Mack, L., de la Hoz, C. F., Penk, M., Piggott, J., Crowe, T., Hering, D., et al. (2022). Perceived multiple stressor effects depend on sample size and stressor gradient length. Water Research, 226. doi:10.1016/j.watres.2022.119260

Available Online

Lynch, K. E., Penk, M. R., Perrin, P. M., & Piggott, J. J. (2022). Cattle Grazing of a Celtic Sea Saltmarsh Affects Invertebrate Community Composition and Biomass, but not Diversity. Wetlands, 42(8). doi:10.1007/s13157-022-01643-6

Available Online

Penk, M. R., Bruen, M., Feld, C. K., Piggott, J. J., Christie, M., Bullock, C., & Kelly-Quinn, M. (2022). Using weighted expert judgement and nonlinear data analysis to improve Bayesian belief network models for riverine ecosystem services. Science of the Total Environment, 851. doi:10.1016/j.scitotenv.2022.158065

Available Online
Assoc Professor Antoinette Perry

Silva, R., Glennon, K., Metoudi, M., Moran, B., Salta, S., Slattery, K., et al. (2023). Unveiling the epigenomic mechanisms of acquired platinum-resistance in high-grade serous ovarian cancer. International Journal of Cancer, 153(1), 120-132. doi:10.1002/ijc.34496

Available Online
Dr Megan Power

Wilkinson, G. S., Adams, D. M., Haghani, A., Lu, A. T., Zoller, J., Breeze, C. E., et al. (2022). Author Correction: DNA methylation predicts age and provides insight into exceptional longevity of bats (Nature Communications, (2021), 12, 1, (1615), 10.1038/s41467-021-21900-2). Nature Communications, 13(1). doi:10.1038/s41467-022-33102-5

Available Online

Power, M. L., Foley, N. M., Jones, G., & Teeling, E. C. (2022). Taking flight: An ecological, evolutionary and genomic perspective on bat telomeres. Molecular Ecology, 31(23), 6053-6068. doi:10.1111/mec.16117

Available Online
Dr Florence Renou-Wilson

Wilson, D., Mackin, F., Tuovinen, J. P., Moser, G., Farrell, C., & Renou-Wilson, F. (2022). Carbon and climate implications of rewetting a raised bog in Ireland. Global Change Biology, 28(21), 6349-6365. doi:10.1111/gcb.16359

Available Online

Aitova, E., Morley, T., Wilson, D., & Renou-Wilson, F. (2023). A review of greenhouse gas emissions and removals from Irish peatlands. Mires and Peat, 29. doi:10.19189/MaP.2022.SNPG.StA.2414

Available Online

Jarmain, C., Cummins, T., Jovani-Sancho, A. J., Nairn, T., Premrov, A., Reidy, B., et al. (2023). Soil organic carbon stocks by soil group for afforested soils in Ireland. Geoderma Regional, 32. doi:10.1016/j.geodrs.2023.e00615

Available Online

Mozafari, B., Bruen, M., Donohue, S., Renou-Wilson, F., & O'Loughlin, F. (2023). Peatland dynamics: A review of process-based models and approaches. Science of the Total Environment, 877. doi:10.1016/j.scitotenv.2023.162890

Available Online
Mr Andrew Ryan

Amin, B., Jennings, D. J., Norman, A., Ryan, A., Ioannidis, V., Magee, A., et al. (2022). Neonate personality affects early-life resource acquisition in a large social mammal. Behavioral Ecology, 33(5), 1025-1035. doi:10.1093/beheco/arac072

Available Online
Dr Susanne Schilling

Schilling, S., Melzer, R., Dowling, C. A., Shi, J., Muldoon, S., & McCabe, P. F. (2023). A protocol for rapid generation cycling (speed breeding) of hemp (Cannabis sativa) for research and agriculture. Plant Journal, 113(3), 437-445. doi:10.1111/tpj.16051

Available Online
Dr Gavin Stewart

Zhong, C., Lyons, T., Heussaff, O., Doyle, E., O'Hara, E., Waters, S. M., et al. (2022). Localization of urea transporter B in the developing bovine rumen. Animal Nutrition, 10, 216-222. doi:10.1016/j.aninu.2022.03.006

Available Online

McLaughlin, D., Griffin, L. L., Ciuti, S., & Stewart, G. (2022). Wildlife feeding activities induce papillae proliferation in the rumen of fallow deer. Mammal Research, 67(4), 525-530. doi:10.1007/s13364-022-00647-1

Available Online

McLaughlin, D., Griffin, L. L., Ciuti, S., & Stewart, G. (2023). Correction to: Wildlife feeding activities induce papillae proliferation in the rumen of fallow deer (Mammal Research, (2022), 67, 4, (525-530), 10.1007/s13364-022-00647-1). Mammal Research, 68(1), 127. doi:10.1007/s13364-022-00650-6

Available Online

Schwarze, J., Carolan, J. C., Stewart, G. S., McCabe, P. F., & Kacprzyk, J. (2023). The boundary of life and death: changes in mitochondrial and cytosolic proteomes associated with programmed cell death of Arabidopsis thaliana suspension culture cells. Frontiers in Plant Science, 14. doi:10.3389/fpls.2023.1194866

Available Online

Stewart, G. (n.d.). SLC14 family of facilitative urea transporters in GtoPdb v.2023.1. IUPHAR/BPS Guide to Pharmacology CITE, 2023(1). doi:10.2218/gtopdb/f186/2023.1

Available Online
Mr Natarajan Subramani

Natarajan, S., Balachandar, D., Senthil, N., Velazhahan, R., & Paranidharan, V. (2022). Volatiles of antagonistic soil yeasts inhibit growth and aflatoxin production of Aspergillus flavus. Microbiological Research, 263. doi:10.1016/j.micres.2022.127150

Available Online
Professor Emma Teeling

Wilkinson, G. S., Adams, D. M., Haghani, A., Lu, A. T., Zoller, J., Breeze, C. E., et al. (2022). Author Correction: DNA methylation predicts age and provides insight into exceptional longevity of bats (Nature Communications, (2021), 12, 1, (1615), 10.1038/s41467-021-21900-2). Nature Communications, 13(1). doi:10.1038/s41467-022-33102-5

Available Online

Power, M. L., Foley, N. M., Jones, G., & Teeling, E. C. (2022). Taking flight: An ecological, evolutionary and genomic perspective on bat telomeres. Molecular Ecology, 31(23), 6053-6068. doi:10.1111/mec.16117

Available Online

Nolan, J. M., Skujina, I., Hurpy, G., & Teeling, E. C. (2023). FIRST EVIDENCE OF THE CINNABAR MOTH TYRIA JACOBAEAE PRESENT IN THE DIET OF THE BROWN LONG-EARED BAT PLECOTUS AURITUS. Biology and Environment, 123(B2), 57-65. doi:10.1353/bae.2023.a901466

Available Online

Simmons, N. B., Ingala, M. R., Pieri, M., Volkert, T. L., Singh, L. N., Philip, P., et al. (2023). The genome sequence of Molossus nigricans (Chiroptera, Molossidae; Miller, 1902). Wellcome Open Research, 8. doi:10.12688/wellcomeopenres.18724.1

Available Online

Lu, A. T., Fei, Z., Haghani, A., Robeck, T. R., Zoller, J. A., Li, C. Z., et al. (2023). Author Correction: Universal DNA methylation age across mammalian tissues (Nature Aging, (2023), 10.1038/s43587-023-00462-6).Nature Aging. doi:10.1038/s43587-023-00499-7

Available Online

Déjosez, M., Marin, A., Hughes, G. M., Morales, A. E., Godoy-Parejo, C., Gray, J. L., et al. (2023). Bat pluripotent stem cells reveal unusual entanglement between host and viruses. Cell, 186(5), 957-974.e28. doi:10.1016/j.cell.2023.01.011

Available Online

Kaplow, I. M., Sestili, H. H., Prasad, K., Brown, A. R., Foley, K., Pfenning, A. R., et al. (2023). Relating enhancer genetic variation across mammals to complex phenotypes using machine learning. Science, 380(6643). doi:10.1126/SCIENCE.ABM7993

Available Online

Phalke, N., Andrews, G., Armstrong, J. C., Bianchi, M., Birren, B. W., Bredemeyer, K. R., et al. (2023). Mammalian evolution of human cis-regulatory elements and transcription factor binding sites. Science, 380(6643). doi:10.1126/SCIENCE.ABN7930

Available Online

Supple, M. A., Subramanian, A., Mudide, A., Serres-Armero, A., Fuentes, V. M., Foley, K., et al. (2023). The contribution of historical processes to contemporary extinction risk in placental mammals. Science, 380(6643). doi:10.1126/SCIENCE.ABN5856

Available Online

Moon, K. L., Huson, H. J., Morrill, K., Wang, M. S., Srikanth, K., Svenson, G. J., et al. (2023). Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs. Science, 380(6643). doi:10.1126/SCIENCE.ABN5887

Available Online

Goodman, D. B., Lind, A. L., Redlich, R. W., Brown, A. R., Teeling, E. C., Andrews, G., et al. (2023). Evolutionary constraint and innovation across hundreds of placental mammals. Science, 380(6643). doi:10.1126/SCIENCE.ABN3943

Available Online

Paulat, N. S., Storer, J. M., Moreno-Santillán, D. D., Osmanski, A. B., Sullivan, K. A. M., Grimshaw, J. R., et al. (2023). Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia. Molecular Biology and Evolution, 40(5). doi:10.1093/molbev/msad092

Available Online

Bapteste, E., Huneman, P., Keller, L., Teulière, J., Lopez, P., Teeling, E. C., et al. (2023). Expanding evolutionary theories of ageing to better account for symbioses and interactions throughout the Web of Life. Ageing Research Reviews, 89. doi:10.1016/j.arr.2023.101982

Available Online

Haghani, A., Li, C. Z., Robeck, T. R., Zhang, J., Lu, A. T., Ablaeva, J., et al. (2023). DNA methylation networks underlying mammalian traits. Science, 381(6658). doi:10.1126/science.abq5693

Available Online

Schneor, L., Kaltenbach, S., Friedman, S., Tussia-Cohen, D., Nissan, Y., Shuler, G., et al. (2023). Comparison of antiviral responses in two bat species reveals conserved and divergent innate immune pathways. iScience, 26(8). doi:10.1016/j.isci.2023.107435

Available Online

Ruedi, M., Vernes, S. C., Teeling, E. C., & Mai, M. (n.d.). The genome sequence of the Soprano Pipistrelle, Pipistrellus pygmaeus (Leach, 1825). Wellcome Open Research, 8, 360. doi:10.12688/wellcomeopenres.19895.1

Available Online

van der Kooij, J., Vernes, S. C., Teeling, E. C., Mai, M., Johannessen, L. E., & Gundersen, G. (n.d.). The genome sequence of the northern bat, Eptesicus nilssonii (Keyserling &amp; Blasius, 1839). Wellcome Open Research, 8, 362. doi:10.12688/wellcomeopenres.19896.1

Available Online
Dr Andrew Tighe

Tighe, A. J., Grayson, S., Byrne, J., Hintikka, S., Jessen, L., Dempsey, J., et al. (2022). Nanopore metatranscriptomics reveals cryptic catfish species as potential Shigella flexneri vectors in Kenya. Scientific Reports, 12(1). doi:10.1038/s41598-022-17036-y

Available Online
Dr Paola Valentini

Pierattini, B., D'Agostino, S., Bon, C., Peruzzo, O., Alendar, A., Codino, A., et al. (2023). SINEUP non-coding RNA activity depends on specific N6-methyladenosine nucleotides. Molecular Therapy - Nucleic Acids, 32, 402-414. doi:10.1016/j.omtn.2023.04.002

Available Online
Dr Katharina Wollenberg Valero

Miralles, A., Köhler, J., Glaw, F., Wollenberg Valero, K. C., Crottini, A., Rosa, G. M., et al. (2023). An endless harvest: integrative revision of the Gephyromantis boulengeri and G. blanci complexes reveals six new species of mantellid frogs from Madagascar. Salamandra, 59(1), 1-41.

 

Mincarelli, L. F., Chapman, E. C., Rotchell, J. M., Turner, A. P., & Wollenberg Valero, K. C. (2023). Sex and gametogenesis stage are strong drivers of gene expression in Mytilus edulis exposed to environmentally relevant plasticiser levels and pH 7.7. Environmental Science and Pollution Research, 30(9), 23437-23449. doi:10.1007/s11356-022-23801-3

Available Online

Barry, A., Samuel, S. F., Hosni, I., Moursi, A., Feugere, L., Sennett, C. J., et al. (2023). Investigating the effects of arginine methylation inhibitors on microdissected brain tumour biopsies maintained in a miniaturised perfusion system. Lab on a Chip, 23(11), 2664-2682. doi:10.1039/d3lc00204g

Available Online

Feugere, L., Bates, A., Emagbetere, T., Chapman, E., Malcolm, L. E., Bulmer, K., et al. (2023). Heat induces multiomic and phenotypic stress propagation in zebrafish embryos.. PNAS nexus, 2(5), pgad137. doi:10.1093/pnasnexus/pgad137

Available Online
Dr Jonathan Yearsley

Gaul, W., Sadykova, D., White, H. J., León-Sánchez, L., Caplat, P., Emmerson, M. C., & Yearsley, J. M. (2022). Modelling the distribution of rare invertebrates by correcting class imbalance and spatial bias. Diversity and Distributions, 28(10), 2171-2186. doi:10.1111/ddi.13619

Available Online

Karbassioon, A., Yearlsey, J., Dirilgen, T., Hodge, S., Stout, J. C., & Stanley, D. A. (2023). Responses in honeybee and bumblebee activity to changes in weather conditions. Oecologia, 201(3), 689-701. doi:10.1007/s00442-023-05332-x

Available Online

Browett, S. S., Synnott, R., O'Meara, D. B., Antwis, R. E., Browett, S. S., Bown, K. J., et al. (2023). Resource competition drives an invasion-replacement event among shrew species on an island. Journal of Animal Ecology, 92(3), 698-709. doi:10.1111/1365-2656.13855

Available Online

Back to Top

Preprint

Assoc Professor Jens Carlsson

Reynaud, E., Gutierrez-Heredia, L., Garbett, A., Horn, E., Carlsson, J., & Collins, P. (2023). Rise of the Cybercrabs: how digital cloning in an integrated taxonomic framework can support deep-sea exploration. doi:10.1101/2023.03.16.532964

Available Online
 
Dr Simone Ciuti

Murphy, K., Smith, A., English, H., Morera-Pujol, V., Kane, A., Jackson, A., & Ciuti, S. (2023). GIS-integrated agent-based simulations to model wolf reintroduction management scenarios in Ireland.. doi:10.22541/au.169070953.36409085/v1

Available Online
 

Byrne, A., Allen, A., Ciuti, S., Gormley, E., Kelly, D., Marks, N., . . . Tsai, M. -S. (n.d.). Badger Ecology, Bovine Tuberculosis, and Population Management: Lessons From the Island of Ireland. doi:10.2139/ssrn.4550866

Available Online
 

Conteddu, K., English, H., Byrne, A., Amin, B., Griffin, L., Kaur, P., et al. (2023). Curbing zoonotic disease spread in multi-host-species systems will require integrating novel data streams and analytical approaches: evidence from a scoping review of bovine tuberculosis. doi:10.1101/2023.05.08.539893

Available Online
 

Kaur, P., Ciuti, S., Ossi, F., Cagnacci, F., Morellet, N., Loison, A., et al. (2023). Assessing bias and robustness of social network metrics using GPS based radio-telemetry data. doi:10.1101/2023.03.30.534779

Available Online
 

Murphy, K., Ciuti, S., Burkitt, T., & Morera-Pujol, V. (2023). Bayesian areal disaggregation regression to predict wildlife distribution and relative density with low-resolution data. doi:10.1101/2023.01.12.523783

Available Online
 

McLaughlin, D., Griffin, L., Zhong, C., Fraser, L. B., Nolan, J., Garcia, E. L., et al. (2023). Dietary regulation of ruminal UT-B2 urea transporters in adult male fallow deer bucks: effects of season and wildlife feeding activity.. doi:10.22541/au.168190052.22338704/v1

Available Online
 

Amin, B., Fishman, R., Quinn, M., Matas, D., Palme, R., Koren, L., & Ciuti, S. (2023). Sex differences in the relationship between maternal and foetal glucocorticoids in a free-ranging large mammal. doi:10.1101/2023.05.04.538920

Available Online
 

Conteddu, K., Wilson, K., Amin, B., Chari, S., Haigh, A., Griffin, L. L., et al. (2023). Fawn bedsite selection by a large ungulate living in a peri-urban area. doi:10.1101/2023.08.11.552922

Available Online
 

Faull, J., Conteddu, K., Griffin, L. L., Amin, B., Smith, A. F., Haigh, A., & Ciuti, S. (2023). Does fear of humans predict anti-predator strategies in an ungulate hider species during fawning?. doi:10.1101/2023.08.16.553188

Available Online
 

Brock, C., Morera-Pujol, V., Murphy, K. J., Nieuwenhuis, M., & Ciuti, S. (2023). Predicting forest damage using relative abundance of multiple deer species and national forest inventory data. doi:10.1101/2023.08.17.553670

Available Online
 

Faull, J., Conteddu, K., Griffin, L. L., Amin, B., Smith, A. F., Haigh, A., & Ciuti, S. (2023). Does fear of humans predict anti-predator strategies in an ungulate hider species during fawning?. doi:10.21203/rs.3.rs-3272704/v1

Available Online
 
Professor Evelyn Doyle

Lastovetsky, O. A., Caruso, T., Brennan, F. P., Wall, D., Pylni, S., & Doyle, E. (2023). Community structure of known and previously unknown endobacteria associated with spores of arbuscular mycorrhizal fungi. doi:10.1101/2023.07.25.550273

Available Online
 
Mr Zixia Huang

Huang, Z., Jiang, C., Gu, J., Uvizl, M., Power, S., Douglas, D., & Kacprzyk, J. (2023). Duplications of human longevity-associated genes across placental mammals. doi:10.1101/2023.05.02.539026

Available Online
 

Uvizl, M., Puechmaille, S., Power, S., Pippel, M., Carthy, S., Haerty, W., et al. (2023). Comparative genome microsynteny illuminates the fast evolution of nuclear mitochondrial segments (NUMTs) in mammals. doi:10.1101/2023.04.20.537758

Available Online
 

Hiller, M., Morales, A., Ahmed, A., Hilgers, L., Kirilenko, B., Kontopoulos, D., et al. (2023). Reference-quality bat genomes illuminate adaptations to viral tolerance and disease resistance. doi:10.21203/rs.3.rs-2557682/v1

Available Online
 
Dr Graham Hughes

Déjosez, M., Marin, A., Hughes, G. M., Morales, A. E., Godoy-Parejo, C., Gray, J., et al. (2022). Bat pluripotent stem cells reveal unique entanglement between host and viruses. doi:10.1101/2022.09.23.509261

Available Online
 

Hiller, M., Morales, A., Ahmed, A., Hilgers, L., Kirilenko, B., Kontopoulos, D., et al. (2023). Reference-quality bat genomes illuminate adaptations to viral tolerance and disease resistance. doi:10.21203/rs.3.rs-2557682/v1

Available Online
 
Dr Rory Johnson

Vancura, A., Gutierrez, A. H., Hennig, T., Pulido-Quetglas, C., Slack, F., Johnson, R., & Häfliger, S. (2022). Is evolutionary conservation a useful predictor for cancer long noncoding RNAs? Insights from the Cancer lncRNA Census 3. doi:10.1101/2022.09.01.506261

Available Online
 

Chouvardas, P., Dhaka, B., Zimmerli, M., Hanhart, D., Moser, M., Guillen-Ramirez, H., et al. (2022). Functional identification of cis-regulatory long noncoding RNAs at controlled false-discovery rates. doi:10.1101/2022.09.18.508380

Available Online
 
Dr Joanna Kacprzyk

Huang, Z., Jiang, C., Gu, J., Uvizl, M., Power, S., Douglas, D., & Kacprzyk, J. (2023). Duplications of human longevity-associated genes across placental mammals. doi:10.1101/2023.05.02.539026

Available Online
 

Burke, R., McCabe, A., Sonawane, N. R., Rathod, M. H., Whelan, C., McCabe, P., & Kacprzyk, J. (2023). Arabidopsis cell suspension culture and RNA sequencing reveal regulatory networks underlying plant programmed cell death. doi:10.1101/2023.03.14.532467

Available Online
 
Dr Adam Kane

Murphy, K., Smith, A., English, H., Morera-Pujol, V., Kane, A., Jackson, A., & Ciuti, S. (2023). GIS-integrated agent-based simulations to model wolf reintroduction management scenarios in Ireland.. doi:10.22541/au.169070953.36409085/v1

Available Online
 
Dr Olga Lastovetsky

Lastovetsky, O. A., Caruso, T., Brennan, F. P., Wall, D., Pylni, S., & Doyle, E. (2023). Community structure of known and previously unknown endobacteria associated with spores of arbuscular mycorrhizal fungi. doi:10.1101/2023.07.25.550273

Available Online
 
Dr Rainer Melzer

Dowling, C., Shi, J., Toth, J., Quade, M., Smart, L., McCabe, P., et al. (2023). A<i>FLOWERING LOCUS T</i>ortholog is associated with photoperiod-insensitive flowering in hemp (<i>Cannabis sativa</i>L.). doi:10.1101/2023.04.21.537862

Available Online
 
Dr Virginia Morera-Pujol

Conteddu, K., English, H., Byrne, A., Amin, B., Griffin, L., Kaur, P., et al. (2023). Curbing zoonotic disease spread in multi-host-species systems will require integrating novel data streams and analytical approaches: evidence from a scoping review of bovine tuberculosis. doi:10.1101/2023.05.08.539893

Available Online
 

Murphy, K., Ciuti, S., Burkitt, T., & Morera-Pujol, V. (2023). Bayesian areal disaggregation regression to predict wildlife distribution and relative density with low-resolution data. doi:10.1101/2023.01.12.523783

Available Online
 

Murphy, K., Smith, A., English, H., Morera-Pujol, V., Kane, A., Jackson, A., & Ciuti, S. (2023). GIS-integrated agent-based simulations to model wolf reintroduction management scenarios in Ireland.. doi:10.22541/au.169070953.36409085/v1

Available Online
 

Brock, C., Morera-Pujol, V., Murphy, K. J., Nieuwenhuis, M., & Ciuti, S. (2023). Predicting forest damage using relative abundance of multiple deer species and national forest inventory data. doi:10.1101/2023.08.17.553670

Available Online
 
Dr Darren O'Connell

Csergo, A., Healy, K., Baudraz, M., Kelly, D., O’Connell, D., Marcaigh, F. Ó., et al. (2022). Spatial phenotypic variability is higher between island than mainland populations worldwide. doi:10.22541/au.166420114.49052856/v1

Available Online
 

Csergo, A. M., Healy, K., O'Connell, D., Baudraz, M., Kelly, D., Ó'Marcaigh, F., et al. (2023). Spatial phenotypic variability is higher between island populations than between mainland populations worldwide. doi:10.22541/au.167542026.68326456/v1

Available Online
 
Dr Megan Power

Kosch, T., Crawford, A., Mueller, R. L., Wollenberg Valero, K., Power, M., Rodríguez, A., et al. (2023). Comparative analysis of amphibian genomes: an emerging resource for basic and applied research. doi:10.1101/2023.02.27.530355

Available Online
 
Mr Andrew Ryan

Purves, K., Brown, H., Haverty, R., Ryan, A., Griffin, L. L., McCormack, J., et al. (2023). First Eurasian cases of SARS-CoV-2 seropositivity in a free-ranging urban population of wild fallow deer. doi:10.1101/2023.07.07.547941

Available Online
 

Conteddu, K., Wilson, K., Amin, B., Chari, S., Haigh, A., Griffin, L. L., et al. (2023). Fawn bedsite selection by a large ungulate living in a peri-urban area. doi:10.1101/2023.08.11.552922

Available Online
 
Dr Susanne Schilling

Dowling, C., Shi, J., Toth, J., Quade, M., Smart, L., McCabe, P., et al. (2023). A<i>FLOWERING LOCUS T</i>ortholog is associated with photoperiod-insensitive flowering in hemp (<i>Cannabis sativa</i>L.). doi:10.1101/2023.04.21.537862

Available Online
 
Dr Gavin Stewart

McLaughlin, D., Griffin, L., Zhong, C., Fraser, L. B., Nolan, J., Garcia, E. L., et al. (2023). Dietary regulation of ruminal UT-B2 urea transporters in adult male fallow deer bucks: effects of season and wildlife feeding activity.. doi:10.22541/au.168190052.22338704/v1

Available Online
 
Professor Emma Teeling

Déjosez, M., Marin, A., Hughes, G. M., Morales, A. E., Godoy-Parejo, C., Gray, J., et al. (2022). Bat pluripotent stem cells reveal unique entanglement between host and viruses. doi:10.1101/2022.09.23.509261

Available Online
 

Uvizl, M., Puechmaille, S., Power, S., Pippel, M., Carthy, S., Haerty, W., et al. (2023). Comparative genome microsynteny illuminates the fast evolution of nuclear mitochondrial segments (NUMTs) in mammals. doi:10.1101/2023.04.20.537758

Available Online
 

Hiller, M., Morales, A., Ahmed, A., Hilgers, L., Kirilenko, B., Kontopoulos, D., et al. (2023). Reference-quality bat genomes illuminate adaptations to viral tolerance and disease resistance. doi:10.21203/rs.3.rs-2557682/v1

Available Online
 

Paulat, N. S., Storer, J. M., Moreno-Santillán, D. D., Osmanski, A. B., Sullivan, K. A. M., Grimshaw, J. R., et al. (2023). Chiropterans are a hotspot for horizontal transfer of DNA transposons in Mammalia. doi:10.1101/2023.03.23.533946

Available Online
 

Schneor, L., Kaltenbach, S., Fridman, S., Nissan, Y., Shuler, G., Fraimovitch, E., et al. (2023). A comparative analysis of the antiviral response in two bat species reveals conserved and divergent innate immune pathways. doi:10.1101/2023.04.23.537989

Available Online
 
Mr Conor Whelan

Burke, R., McCabe, A., Sonawane, N. R., Rathod, M. H., Whelan, C., McCabe, P., & Kacprzyk, J. (2023). Arabidopsis cell suspension culture and RNA sequencing reveal regulatory networks underlying plant programmed cell death. doi:10.1101/2023.03.14.532467

Available Online
 
Dr Katharina Wollenberg Valero

Feugere, L., De Freitas, C. S., Bates, A., Storey, K., Beltran-Alvarez, P., & Valero, K. W. (2023). Consequences of directly- and indirectly-experienced heat stress in a mutagenic environment. doi:10.1101/2023.10.03.560724

Available Online
 

Kosch, T., Crawford, A., Mueller, R. L., Wollenberg Valero, K., Power, M., Rodríguez, A., et al. (2023). Comparative analysis of amphibian genomes: an emerging resource for basic and applied research. doi:10.1101/2023.02.27.530355

Available Online
 
Dr Jonathan Yearsley

Sadykova, D., Yearsley, J. M., Aderhold, A., Dondelinger, F., White, H. J., Sanchez, L. L., et al. (2023). Weak interactions cause poor performance of common network inference models. doi:10.1101/2023.06.22.546059

Available Online
 

Back to Top

Report

Dr Jan-Robert Baars

Baars, J. -R., Flynn, O., Swanwick, H., & O'Leary, K. (2022). The Quagga mussel in the Shannon catchment: distribution, ecology and risk of dispersal. Ireland: LBAF.

 

Baars, J. -R. (2022). Control of American Skunk Cabbage (Lysichiton americanus) on the River Liffey: 2022. Ireland, Co Kildare: Kildare County Council.

 

Baars, J. -R. (2022). Survey of the Ephemeroptera and Plecoptera of the Galway’s and Owengarriff River catchments in Killarney National Park. Ireland: NPWS.

 
Professor Mary Kelly-Quinn

Kelly-Quinn, M., Bruen, M., Turner, J., O'Sullivan, J., Carlsson, J., Bullock, C., et al. (2022). Assessment of the Extent and Impact of Barriers on Freshwater Hydromorphology and Connectivity in Ireland (Reconnect) (421). Wexford, Ireland: Environmental Protection Agency.

 

Kelly-Quinn, M. (2022). Assessment of the Extent and Impact of Barriers on Freshwater Hydromorphology and Connectivity in Ireland (Reconnect) (421). Ireland: Environmental Protection Agency.

 

Kelly-Quinn, M., Bruen, M., Bullock, C., Christie, M., Feld, C., Kenter, J., et al. (2022). ESDecide: From Ecosystem Services Framework to Application for Integrated Freshwater Resources Management (424). Wexford Ireland: Environmnetal Portection Agency.

 
Dr Marcin Penk

Kelly-Quinn, M., Bruen, M., Bullock, C., Christie, M., Feld, C., Kenter, J., et al. (2022). ESDecide: From Ecosystem Services Framework to Application for Integrated Freshwater Resources Management (424). Wexford Ireland: Environmnetal Portection Agency.

 

Back to Top