Below is the list of research publications for the School of Biology and Environmental Science in the academic year 2022/23.
Dr Jan-Robert Baars | |
Flynn, O., Kelly-Quinn, M., Harlow, L., Baars, J. -R., & Baars, J. -R. (2022). The Friends of the Rye - Celebrating 30 Years of commitment to the Rye Water and its valley. Ireland: Glasseye. |
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Professor Mary Kelly-Quinn | |
Flynn, O., Kelly-Quinn, M., Harlow, L., Baars, J. -R., & Baars, J. -R. (2022). The Friends of the Rye - Celebrating 30 Years of commitment to the Rye Water and its valley. Ireland: Glasseye. |
Dr Jan-Robert Baars | |
Baars, J. -R. (2022). British and Irish Stoneflies (Plecoptera): Keys to the adults and larvae. Ireland: Irish Naturalists Journal. |
Professor Thomas Bolger | |
Bolger, T. (2022). Introduction - The value of local surveys and their contribution to broader ecological research.. In New Survey of Clare Island Volume 10: Zoology (pp. 1-5). Dublin: Royal Irish Academy. |
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Bolger, T. (2022). A Resurvey of the Collembola and Acari (Oribatida and Mesostigmata) of Clare Island.. In New Survey of Clare Island Volume 10: Zoology (pp. 69-78). Dublin: Royal Irish Academy. |
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Dr Tamara Hochstrasser | |
McKeown, A., Lennon, M., White, R., Garska, J., Istrate, A., Russell, P., & Hochstrasser, T. (2023). Serious Games for Empowering Teenagers: A STEAM Approach to Climate Change Reflection and Communication. In University Initiatives on Climate Change Education and Research (pp. 1-24). Springer Nature Switzerland. doi:10.1007/978-3-031-25960-9_51-1 |
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Dr Marcin Penk | |
de Eyto, E., Murphy, C., Broderick, C., Penk, M., Poole, R., Kelly, S., et al. (2023). Land Ocean Aquatic Continuum. In G. Nolan, C. Cusack, & D. Fitzhenry (Eds.), Irish Ocean Climate and Ecosystem Status Report (pp. 101-117). Rinville, Oranmore, Co. Galway: The Marine Institute. |
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Assoc Professor Antoinette Perry | |
Cosgrave, J. M., & Perry, A. S. (2023). Therapeutic applications of the prostate cancer epigenome. In Epigenetic Cancer Therapy, Second Edition (pp. 301-337). doi:10.1016/B978-0-323-91367-6.00024-6 |
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Dr Katharina Wollenberg Valero | |
Glaw, F., Crottini, A., Rakotoarison, A., Scherz, M., Vences, M., Andreone, F., et al. (2022). Amphibians. In S. M. Godman (Ed.), The New Natural History of Madagascar. Princeton, NJ, USA: Princeton University Press. |
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Glaw, F., Vences, M., Raxworthy, C., Brown, J., Crottini, A., D'Cruze, N., et al. (2022). Reptiles. In S. M. Goodman (Ed.), The New Natural History of Madagascar. Princeton, NJ, USA: Princeton University Press. |
Dr Nicholas Brereton | |
Hajjar, R., Gonzalez, E., Fragoso, G., Oliero, M., Alaoui, A. A., Calvé, A., et al. (2022). IDDF2022-ABS-0225 The GUT microbiota modulates colonic healing in patients undergoing surgery for colorectal cancer. In Basic Gastroenterology. BMJ Publishing Group Ltd and British Society of Gastroenterology. doi:10.1136/gutjnl-2022-iddf.72 |
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Dr Tamara Hochstrasser | |
Hochstrasser, T., Finkele, K., & Murphy, P. (2022). Towards establishing an Irish National Soil Moisture Monitoring Network. In European Meteorological Society Annual Meeting 2021. Online. doi:10.5194/ems2021-273 |
Dr Jan-Robert Baars | |
O'Leary, K., Flynn, O., Swanwick, H., Caplice, M., Baars, J. -R., & Baars, J. -R. (2022). Observations on the New Zealand Land Hopper (Arcitalitrus dorrieni (Hunt, 1925)) in Ireland. Irish Naturalists Journal. |
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Mangan, R., & Baars, J. R. (2023). Risk assessment of the host range of Hydrellia lagarosiphon for the biological control of Lagarosiphon major in Ireland. Biocontrol Science and Technology, 33(7), 681-700. doi:10.1080/09583157.2023.2215993 |
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Feeley, H., Kennedy, B., Mitchell, R., & Baars, J. -R. (2023). ADULT STONEFLY (PLECOPTERA) RECORDS FROM IRELAND IN 2022. Bulletin of the Irish Biogeographical Society, 46, 25-38. |
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Bommerlund, J., Baars, J. R., Schrøder-Nielsen, A., Brys, R., Mauvisseau, C., de Boer, H. J., & Mauvisseau, Q. (2023). eDNA-based detection as an early warning tool for detecting established and emerging invasive amphipods. Management of Biological Invasions, 14(2), 321-333. doi:10.3391/mbi.2023.14.2.09 |
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Mr Bernard Ball | |
Georgieva, M. N., Rimskaya-Korsakova, N. N., Krolenko, V. I., Van Dover, C. L., Amon, D. J., Copley, J. T., et al. (2023). A tale of two tubeworms: taxonomy of vestimentiferans (Annelida: Siboglinidae) from the Mid-Cayman Spreading Centre. Invertebrate Systematics, 37(3), 167-191. doi:10.1071/IS22047 |
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Dr Chandra Bellasio | |
Bellasio, C., & Ermakova, M. (2022). Reduction of bundle sheath size boosts cyclic electron flow in C<inf>4</inf> Setaria viridis acclimated to low light. Plant Journal, 111(5), 1223-1237. doi:10.1111/tpj.15915 |
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Cherelli, S. G., Bellasio, C., Marcati, C. R., Rodrigues dos Santos, T. P., Rodrigues, S. A., Leonel, M., & Ballarin, A. W. (2023). The corewood of 25-year-old Hevea brasiliensis from two rubber plantations has high starch content. European Journal of Wood and Wood Products, 81(4), 847-855. doi:10.1007/s00107-023-01935-6 |
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Professor Thomas Bolger | |
Seniczak, A., Seniczak, S., Iturrondobeitia, J. C., Gwiazdowicz, D. J., Waldon-Rudzionek, B., Flatberg, K. I., & Bolger, T. (2022). Mites (Oribatida and Mesostigmata) and vegetation as complementary bioindicators in peatlands. Science of the Total Environment, 851. doi:10.1016/j.scitotenv.2022.158335 |
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Lindo, Z., Bolger, T., & Caruso, T. (2023). Stochastic processes in the structure and functioning of soil biodiversity. Frontiers in Ecology and Evolution, 11. doi:10.3389/fevo.2023.1055336 |
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Dr Nicholas Brereton | |
Selim, Y., Di Lena, É., Abu-Omar, N., Baig, Z., Verhoeff, K., La, J., et al. (2022). 2022 Canadian Surgery Forum Sept. 15–17, 202201. Canadian Journal of Surgery, 65(6 Suppl 2), S33-S111. doi:10.1503/cjs.014322 |
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Minerbi, A., Gonzalez, E., Brereton, N., Fitzcharles, M. A., Chevalier, S., & Shir, Y. (2023). Altered serum bile acid profile in fibromyalgia is associated with specific gut microbiome changes and symptom severity. Pain, 164(2), E66-E76. doi:10.1097/j.pain.0000000000002694 |
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Jerbi, A., Kalwahali-Muissa, M., Krygier, R., Johnston, C., Blank, M., Sarrazin, M., et al. (2023). Comparative wood anatomy, composition and saccharification yields of wastewater irrigated willow cultivars at three plantations in Canada and Northern Ireland. Biomass and Bioenergy, 170. doi:10.1016/j.biombioe.2022.106683 |
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Pedneault, K., Carbajo, J. P., Nicolle, P., Pathak, M., Wilson, N., Campos-Arguedas, F., et al. (2023). Different patterns of temperature impact phenolic derivatives in ripening Vitis sp. berries. Acta Horticulturae, 1368, 61-66. doi:10.17660/ActaHortic.2023.1370.9 |
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Grenier, V., Gonzalez, E., Brereton, N. J. B., & Pitre, F. E. (2023). Dynamics of bacterial and archaeal communities during horse bedding and green waste composting. PeerJ, 11. doi:10.7717/peerj.15239 |
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Hajjar, R., Gonzalez, E., Fragoso, G., Oliero, M., Alaoui, A. A., Calvé, A., et al. (2023). Gut microbiota influence anastomotic healing in colorectal cancer surgery through modulation of mucosal proinflammatory cytokines. Gut, 72(6), 1143-1154. doi:10.1136/gutjnl-2022-328389 |
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Dr Paul Brooks | |
Brooks, P. R., Browne, M. A., Benedetti-Cecchi, L., Lyons, D. A., & Crowe, T. P. (2023). A response-surface approach into the interactive effects of multiple stressors reveals new insights into complex responses. Frontiers in Marine Science, 10. doi:10.3389/fmars.2023.1169677 |
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Earp, H. S., George, R., Brooks, P. R., Farrugia Drakard, V., Thompson, B. J., Fisher, B., et al. (2023). The population structure, sex ratio and reproductive potential of limpets (Patella spp.) on natural shores and artificial structures in the Irish Sea. Marine Environmental Research, 184. doi:10.1016/j.marenvres.2022.105853 |
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Farrugia Drakard, V., Brooks, P. R., & Crowe, T. P. (2023). Colonisation after disturbance on artificial structures: The influence of timing and grazing. Marine Environmental Research, 187. doi:10.1016/j.marenvres.2023.105956 |
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Farrugia Drakard, V., Evans, A. J., Crowe, T. P., Moore, P. J., Coughlan, J., & Brooks, P. R. (2023). Artificial rockpools: Seaweed colonisation and productivity vary between sites but are consistent across environmental contexts. Marine Environmental Research, 188. doi:10.1016/j.marenvres.2023.106022 |
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Thompson, B., Brooks, P. R., Farrugia Drakard, V., Kubin, F., Earp, H. S., Alvarez-Cienfuegos, I., et al. (2023). Population structure and reproductive states of the dogwhelk Nucella lapillus differ between artificial structures and natural rocky shores. Marine Environmental Research, 189. doi:10.1016/j.marenvres.2023.106059 |
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Kelleghan, D. B., O'Callaghan, L., Huggard, F., Crowe, T. P., & Brooks, P. R. (2023). Using valve gape analysis to compare sensitivity of native Mytilus edulis to invasive Magallana gigas when exposed to heavy metal contamination. Marine Environmental Research, 189. doi:10.1016/j.marenvres.2023.106043 |
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Dr Elizabeth Bruton | |
Bruton, E. (n.d.). The life and material culture of Hertha Marks Ayrton (1854&ndash;1923): suffragette, physicist, mathematician and inventor. Science Museum Group Journal, 10(10). doi:10.15180/181002 |
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Bruton, E. (n.d.). Technologies of Romance: Valentine from a Telegraph Clerk ? to a Telegraph Clerk ?: the material culture and standards of early electrical telegraphy. Science Museum Group Journal, 12(12). doi:10.15180/191201 |
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Ms Martina Caplice | |
O'Leary, K., Flynn, O., Swanwick, H., Caplice, M., Baars, J. -R., & Baars, J. -R. (2022). Observations on the New Zealand Land Hopper (Arcitalitrus dorrieni (Hunt, 1925)) in Ireland. Irish Naturalists Journal. |
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Assoc Professor Jens Carlsson | |
Farrell, E. D., Andersson, L., Bekkevold, D., Campbell, N., Carlsson, J., Clarke, M. W., et al. (2022). A baseline for the genetic stock identification of Atlantic herring, Clupea harengus, in ICES Divisions 6.a, 7.b-c. Royal Society Open Science, 9(9). doi:10.1098/rsos.220453 |
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Tighe, A. J., Grayson, S., Byrne, J., Hintikka, S., Jessen, L., Dempsey, J., et al. (2022). Nanopore metatranscriptomics reveals cryptic catfish species as potential Shigella flexneri vectors in Kenya. Scientific Reports, 12(1). doi:10.1038/s41598-022-17036-y |
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Curnick, D. J., Deaville, R., Bortoluzzi, J. R., Cameron, L., Carlsson, J. E. L., Carlsson, J., et al. (2023). Northerly range expansion and first confirmed records of the smalltooth sand tiger shark, Odontaspis ferox, in the United Kingdom and Ireland. Journal of Fish Biology. doi:10.1111/jfb.15529 |
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Dr Tancredi Caruso | |
Caruso, T., Clemente, G. V., Rillig, M. C., & Garlaschelli, D. (2022). Fluctuating ecological networks: A synthesis of maximum-entropy approaches for pattern detection and process inference. Methods in Ecology and Evolution, 13(11), 2306-2317. doi:10.1111/2041-210X.13985 |
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Lastovetsky, O. A., Caruso, T., Brennan, F. P., Wall, D. P., McMahon, S., & Doyle, E. (2022). Evidence of a selective and bi-directional relationship between arbuscular mycorrhizal fungal and bacterial communities co-inhabiting plant roots. Environmental Microbiology, 24(11), 5378-5391. doi:10.1111/1462-2920.16227 |
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Chomel, M., Lavallee, J. M., Alvarez-Segura, N., Baggs, E. M., Caruso, T., de Castro, F., et al. (2022). Intensive grassland management disrupts below-ground multi-trophic resource transfer in response to drought. Nature Communications, 13(1). doi:10.1038/s41467-022-34449-5 |
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Maraun, M., Thomas, T., Fast, E., Treibert, N., Caruso, T., Schaefer, I., et al. (2023). New perspectives on soil animal trophic ecology through the lens of C and N stable isotope ratios of oribatid mites. Soil Biology and Biochemistry, 177. doi:10.1016/j.soilbio.2022.108890 |
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Caruso, T., & Rillig, M. C. (2023). Correction to: A general stochastic model shows that plant-soil feedbacks can buffer plant species from extinction risks in unpredictable environments (Plant and Soil, (2022), 10.1007/s11104-022-05698-6). Plant and Soil, 483(1-2), 725-726. doi:10.1007/s11104-022-05834-2 |
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Caruso, T., & Rillig, M. C. (2023). A general stochastic model shows that plant-soil feedbacks can buffer plant species from extinction risks in unpredictable environments. Plant and Soil, 485(1-2), 45-56. doi:10.1007/s11104-022-05698-6 |
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Dr Simone Ciuti | |
Amin, B., Jennings, D. J., Norman, A., Ryan, A., Ioannidis, V., Magee, A., et al. (2022). Neonate personality affects early-life resource acquisition in a large social mammal. Behavioral Ecology, 33(5), 1025-1035. doi:10.1093/beheco/arac072 |
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Griffin, L. L., Haigh, A., Amin, B., Faull, J., Norman, A., & Ciuti, S. (2022). Artificial selection in human-wildlife feeding interactions. Journal of Animal Ecology, 91(9), 1892-1905. doi:10.1111/1365-2656.13771 |
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Murphy, K. J., Morera-Pujol, V., Ryan, E., Byrne, A. W., Breslin, P., & Ciuti, S. (2022). Habitat availability alters the relative risk of a bovine tuberculosis breakdown in the aftermath of a commercial forest clearfell disturbance. Journal of Applied Ecology, 59(9), 2333-2345. doi:10.1111/1365-2664.14233 |
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Amin, B., Verbeek, L., Haigh, A., Griffin, L. L., & Ciuti, S. (2022). Risk-taking neonates do not pay a survival cost in a free-ranging large mammal, the fallow deer (Dama dama). Royal Society Open Science, 9(9). doi:10.1098/rsos.220578 |
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McLaughlin, D., Griffin, L. L., Ciuti, S., & Stewart, G. (2022). Wildlife feeding activities induce papillae proliferation in the rumen of fallow deer. Mammal Research, 67(4), 525-530. doi:10.1007/s13364-022-00647-1 |
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Murphy, K. J., Griffin, L. L., Nolan, G., Haigh, A., Hochstrasser, T., Ciuti, S., & Kane, A. (2022). Applied autoethnography: A method for reporting best practice in ecological and environmental research. Journal of Applied Ecology, 59(11), 2688-2697. doi:10.1111/1365-2664.14252 |
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Smith, A. F., Ciuti, S., Shamovich, D., Fenchuk, V., Zimmermann, B., & Heurich, M. (2022). Quiet islands in a world of fear: Wolves seek core zones of protected areas to escape human disturbance. Biological Conservation, 276. doi:10.1016/j.biocon.2022.109811 |
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McLaughlin, D., Griffin, L. L., Ciuti, S., & Stewart, G. (2023). Correction to: Wildlife feeding activities induce papillae proliferation in the rumen of fallow deer (Mammal Research, (2022), 67, 4, (525-530), 10.1007/s13364-022-00647-1). Mammal Research, 68(1), 127. doi:10.1007/s13364-022-00650-6 |
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Keenan, S., Niedziela, D., Morera-Pujol, V., Franklin, D., Murphy, K. J., Ciuti, S., & McMahon, B. J. (2023). Zoonotic disease classification in wildlife: a theoretical framework for researchers. Mammal Review. doi:10.1111/mam.12329 |
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Morera-Pujol, V., Mostert, P. S., Murphy, K. J., Burkitt, T., Coad, B., McMahon, B. J., et al. (2023). Bayesian species distribution models integrate presence-only and presence–absence data to predict deer distribution and relative abundance. Ecography, 2023(2). doi:10.1111/ecog.06451 |
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Griffin, L. L., Haigh, A., Amin, B., Faull, J., Corcoran, F., Baker-Horne, C., & Ciuti, S. (2023). Does artificial feeding impact neonate growth rates in a large free-ranging mammal?. Royal Society Open Science, 10(3). doi:10.1098/rsos.221386 |
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Murphy, K. J., Roberts, D. R., Jensen, W. F., Nielsen, S. E., Johnson, S. K., Hosek, B. M., et al. (2023). Mule deer fawn recruitment dynamics in an energy disturbed landscape. Ecology and Evolution, 13(4). doi:10.1002/ece3.9976 |
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Griffin, L. L., & Ciuti, S. (2023). Should we feed wildlife? A call for further research into this recreational activity. Conservation Science and Practice, 5(7). doi:10.1111/csp2.12958 |
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Griffin, L. L., Nolan, G., Haigh, A., Condon, H., O'Hagan, E., McDonnell, P., et al. (2023). How can we tackle interruptions to human–wildlife feeding management? Adding media campaigns to the wildlife manager's toolbox. People and Nature, 5(4), 1299-1315. doi:10.1002/pan3.10499 |
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Dr Grace Cott | |
Burke, S. A., Manahan, J., Eichelmann, E., & Cott, G. M. (2022). Dublin’s saltmarshes contain climate-relevant carbon pools. Frontiers in Marine Science, 9. doi:10.3389/fmars.2022.976457 |
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Ms Jennifer Coughlan | |
Farrugia Drakard, V., Evans, A. J., Crowe, T. P., Moore, P. J., Coughlan, J., & Brooks, P. R. (2023). Artificial rockpools: Seaweed colonisation and productivity vary between sites but are consistent across environmental contexts. Marine Environmental Research, 188. doi:10.1016/j.marenvres.2023.106022 |
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Professor Fiona Doohan | |
Langridge, P., Alaux, M., Almeida, N. F., Ammar, K., Baum, M., Bekkaoui, F., et al. (2022). Meeting the Challenges Facing Wheat Production: The Strategic Research Agenda of the Global Wheat Initiative. Agronomy, 12(11). doi:10.3390/agronomy12112767 |
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Vranic, M., Perochon, A., Benbow, H., & Doohan, F. M. (2022). Comprehensive analysis of pathogen-responsive wheat NAC transcription factors: new candidates for crop improvement. G3: Genes, Genomes, Genetics, 12(11). doi:10.1093/g3journal/jkac247 |
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Deshaies, M., Lamari, N., Ng, C. K. Y., Ward, P., & Doohan, F. M. (2022). The impact of chitosan on the early metabolomic response of wheat to infection by Fusarium graminearum. BMC Plant Biology, 22(1). doi:10.1186/s12870-022-03451-w |
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Brennan, L., O'Gorman, A., Barth, S., Cadden, T., Dean, M., Doohan, F., et al. (2022). An innovative food system approach to diversifying protein intake: Protein-I: Shared Island sustainable healthy nutrition. Nutrition Bulletin, 47(4), 516-523. doi:10.1111/nbu.12590 |
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Kahla, A., Verheecke-Vaessen, C., Delpino-Deelias, M., Gutierrez-Pozo, M., Medina, A., Magan, N., & Doohan, F. (2023). Acclimatisation of Fusarium langsethiae, F. poae and F. sporotrichioides to elevated CO<inf>2</inf>: Impact on fungal growth and mycotoxin production on oat-based media. International Journal of Food Microbiology, 394. doi:10.1016/j.ijfoodmicro.2023.110176 |
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Vranic, M., Perochon, A., & Doohan, F. M. (2023). Transcriptional Profiling Reveals the Wheat Defences against Fusarium Head Blight Disease Regulated by a NAC Transcription Factor. Plants, 12(14). doi:10.3390/plants12142708 |
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Professor Evelyn Doyle | |
Zhong, C., Lyons, T., Heussaff, O., Doyle, E., O'Hara, E., Waters, S. M., et al. (2022). Localization of urea transporter B in the developing bovine rumen. Animal Nutrition, 10, 216-222. doi:10.1016/j.aninu.2022.03.006 |
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Lastovetsky, O. A., Caruso, T., Brennan, F. P., Wall, D. P., McMahon, S., & Doyle, E. (2022). Evidence of a selective and bi-directional relationship between arbuscular mycorrhizal fungal and bacterial communities co-inhabiting plant roots. Environmental Microbiology, 24(11), 5378-5391. doi:10.1111/1462-2920.16227 |
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Dr Elke Eichelmann | |
Shahan, J., Chu, H., Windham-Myers, L., Matsumura, M., Carlin, J., Eichelmann, E., et al. (2022). Combining Eddy Covariance and Chamber Methods to Better Constrain CO<inf>2</inf> and CH<inf>4</inf> Fluxes Across a Heterogeneous Restored Tidal Wetland. Journal of Geophysical Research: Biogeosciences, 127(9). doi:10.1029/2022JG007112 |
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Stapleton, A., Eichelmann, E., & Roantree, M. (2022). A framework for constructing machine learning models with feature set optimisation for evapotranspiration partitioning. Applied Computing and Geosciences, 16. doi:10.1016/j.acags.2022.100105 |
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Burke, S. A., Manahan, J., Eichelmann, E., & Cott, G. M. (2022). Dublin’s saltmarshes contain climate-relevant carbon pools. Frontiers in Marine Science, 9. doi:10.3389/fmars.2022.976457 |
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Dr Wieland Fricke | |
Sharipova, G., Ivanov, R., Veselov, D., Akhiyarova, G., Seldimirova, O., Galin, I., et al. (2022). Effect of Salinity on Stomatal Conductance, Leaf Hydraulic Conductance, HvPIP2 Aquaporin, and Abscisic Acid Abundance in Barley Leaf Cells. International Journal of Molecular Sciences, 23(22). doi:10.3390/ijms232214282 |
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Lu, Y., Jeffers, R., Raju, A., Kenny, T., Ratchanniyasamu, E., & Fricke, W. (2023). Does night-time transpiration provide any benefit to wheat (Triticum aestivum L.) plants which are exposed to salt stress?. Physiologia Plantarum, 175(1). doi:10.1111/ppl.13839 |
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Lu, Y., & Fricke, W. (2023). Changes in root hydraulic conductivity in wheat (Triticum aestivum L.) in response to salt stress and day/night can best be explained through altered activity of aquaporins. Plant Cell and Environment, 46(3), 747-763. doi:10.1111/pce.14535 |
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Lu, Y., & Fricke, W. (2023). Salt Stress—Regulation of Root Water Uptake in a Whole-Plant and Diurnal Context. International Journal of Molecular Sciences, 24(9). doi:10.3390/ijms24098070 |
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Lu, Y., & Fricke, W. (2023). Diurnal changes in apoplast bypass flow of water and ions in salt-stressed wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.). Physiologia Plantarum, 175(4). doi:10.1111/ppl.13955 |
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Dr Courtney Gorman | |
Hulsey, C. D., & Gorman, C. E. (2023). Coevolution of the premaxillary ascending process and jaw protrusion in Lake Malawi cichlid fishes. Hydrobiologia, 850(10-11), 2231-2240. doi:10.1007/s10750-022-04949-y |
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Dr Tamara Hochstrasser | |
Murphy, K. J., Griffin, L. L., Nolan, G., Haigh, A., Hochstrasser, T., Ciuti, S., & Kane, A. (2022). Applied autoethnography: A method for reporting best practice in ecological and environmental research. Journal of Applied Ecology, 59(11), 2688-2697. doi:10.1111/1365-2664.14252 |
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Dr Grace Hoysted | |
Hoysted, G. A., Field, K. J., Sinanaj, B., Bell, C. A., Bidartondo, M. I., & Pressel, S. (2023). Direct nitrogen, phosphorus and carbon exchanges between Mucoromycotina ‘fine root endophyte’ fungi and a flowering plant in novel monoxenic cultures. New Phytologist, 238(1), 70-79. doi:10.1111/nph.18630 |
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Durant, E., Hoysted, G. A., Howard, N., Sait, S. M., Childs, D. Z., Johnson, D., & Field, K. J. (2023). Herbivore-driven disruption of arbuscular mycorrhizal carbon-for-nutrient exchange is ameliorated by neighboring plants. Current Biology, 33(12), 2566-2573.e4. doi:10.1016/j.cub.2023.05.033 |
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Mr Zixia Huang | |
Zeng, Z., Jiang, C., Tan, Q., Tang, B., & Huang, Z. (2022). Larvae of a marine gastropod and a marine bivalve share common gene expression signatures during metamorphic competence. Marine Biology, 169(9). doi:10.1007/s00227-022-04106-y |
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Dr Graham Hughes | |
Vernes, S. C., Devanna, P., Hörpel, S. G., Alvarez van Tussenbroek, I., Firzlaff, U., Hagoort, P., et al. (2022). The pale spear-nosed bat: A neuromolecular and transgenic model for vocal learning. Annals of the New York Academy of Sciences, 1517(1), 125-142. doi:10.1111/nyas.14884 |
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Castellanos, F. X., Moreno-Santillán, D., Hughes, G. M., Paulat, N. S., Sipperly, N., Brown, A. M., et al. (2023). The evolution of antimicrobial peptides in Chiroptera. Frontiers in Immunology, 14. doi:10.3389/fimmu.2023.1250229 |
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Waterhouse, R., Adam-Blondon, A. -F., Balech, B., Barta, E., Heil, K., Hughes, G., et al. (2023). The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity. doi:10.12688/f1000research.133724.1 |
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Déjosez, M., Marin, A., Hughes, G. M., Morales, A. E., Godoy-Parejo, C., Gray, J. L., et al. (2023). Bat pluripotent stem cells reveal unusual entanglement between host and viruses. Cell, 186(5), 957-974.e28. doi:10.1016/j.cell.2023.01.011 |
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Xue, J. R., Mouri, K., Garcia, M. F., Akers, J. F., Noble, M., Noonan, J. P., et al. (2023). The functional and evolutionary impacts of human-specific deletions in conserved elements. Science, 380(6643). doi:10.1126/SCIENCE.ABN2253 |
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Supple, M. A., Subramanian, A., Mudide, A., Serres-Armero, A., Fuentes, V. M., Foley, K., et al. (2023). The contribution of historical processes to contemporary extinction risk in placental mammals. Science, 380(6643). doi:10.1126/SCIENCE.ABN5856 |
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Moon, K. L., Huson, H. J., Morrill, K., Wang, M. S., Srikanth, K., Svenson, G. J., et al. (2023). Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs. Science, 380(6643). doi:10.1126/SCIENCE.ABN5887 |
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Goodman, D. B., Lind, A. L., Redlich, R. W., Brown, A. R., Teeling, E. C., Andrews, G., et al. (2023). Evolutionary constraint and innovation across hundreds of placental mammals. Science, 380(6643). doi:10.1126/SCIENCE.ABN3943 |
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Sakthikumar, S., Nordin, J., Roy, A., Xue, J., Yao, S., Sun, Q., et al. (2023). Leveraging base-pair mammalian constraint to understand genetic variation and human disease. Science, 380(6643). doi:10.1126/SCIENCE.ABN2937 |
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Kirilenko, B. M., Munegowda, C., Osipova, E., Jebb, D., Sharma, V., Blumer, M., et al. (2023). Integrating gene annotation with orthology inference at scale. Science, 380(6643). doi:10.1126/SCIENCE.ABN3107 |
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Osmanski, A. B., Korstian, J., Grimshaw, J. R., Halsey, M., Moreno-Santillán, D. D., Crookshanks, C., et al. (2023). Insights into mammalian TE diversity through the curation of 248 genome assemblies. Science, 380(6643). doi:10.1126/SCIENCE.ABN1430 |
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Kaplow, I. M., Sestili, H. H., Prasad, K., Brown, A. R., Foley, K., Pfenning, A. R., et al. (2023). Relating enhancer genetic variation across mammals to complex phenotypes using machine learning. Science, 380(6643). doi:10.1126/SCIENCE.ABM7993 |
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Whalen, S., Inoue, F., Przytycki, P. F., Fair, T., Deng, C., Steyert, M., et al. (2023). Three-dimensional genome rewiring in loci with human accelerated regions. Science, 380(6643). doi:10.1126/SCIENCE.ABM1696 |
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Phalke, N., Andrews, G., Armstrong, J. C., Bianchi, M., Birren, B. W., Bredemeyer, K. R., et al. (2023). Mammalian evolution of human cis-regulatory elements and transcription factor binding sites. Science, 380(6643). doi:10.1126/SCIENCE.ABN7930 |
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Shatilovich, A., Gade, V. R., Pippel, M., Hoffmeyer, T. T., Tchesunov, A. V., Stevens, L., et al. (2023). A novel nematode species from the Siberian permafrost shares adaptive mechanisms for cryptobiotic survival with C. elegans dauer larva. PLoS Genetics, 19(7). doi:10.1371/journal.pgen.1010798 |
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Dr Darrin Hulsey | |
Masonick, P., Meyer, A., & Hulsey, C. D. (2023). A Kiss of Deep Homology: Partial Convergence in the Genomic Basis of Hypertrophied Lips in Cichlid Fish and Human Cleft Lip. Genome Biology and Evolution, 15(5). doi:10.1093/gbe/evad072 |
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Hulsey, C. D., & Gorman, C. E. (2023). Coevolution of the premaxillary ascending process and jaw protrusion in Lake Malawi cichlid fishes. Hydrobiologia, 850(10-11), 2231-2240. doi:10.1007/s10750-022-04949-y |
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Dr Israel Ikoyi | |
Deinert, L., Ikoyi, I., Egeter, B., Forrestal, P., & Schmalenberger, A. (2023). Short-Term Impact of Recycling-Derived Fertilizers on Their P Supply for Perennial Ryegrass (Lolium perenne). Plants, 12(15). doi:10.3390/plants12152762 |
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Dr Anne Jansen-Willems | |
Xie, L., Liu, D., Müller, C., Jansen-Willems, A., Chen, Z., Niu, Y., et al. (2022). Brachiaria humidicola Cultivation Enhances Soil Nitrous Oxide Emissions from Tropical Grassland by Promoting the Denitrification Potential: A <sup>15</sup>N Tracing Study. Agriculture (Switzerland), 12(11). doi:10.3390/agriculture12111940 |
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Zheng, J., Fujii, K., Koba, K., Wanek, W., Müller, C., Jansen-Willems, A. B., et al. (2023). Revisiting process-based simulations of soil nitrite dynamics: Tighter cycling between nitrite and nitrate than considered previously. Soil Biology and Biochemistry, 178. doi:10.1016/j.soilbio.2023.108958 |
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Professor Lars Jermiin | |
Salzberg, L. I., Martos, A. A. R., Lombardi, L., Jermiin, L. S., Blanco, A., Byrne, K. P., & Wolfe, K. H. (2022). A widespread inversion polymorphism conserved among Saccharomyces species is caused by recurrent homogenization of a sporulation gene family. PLoS Genetics, 18(11). doi:10.1371/journal.pgen.1010525 |
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Waterhouse, R., Adam-Blondon, A. -F., Balech, B., Barta, E., Heil, K., Hughes, G., et al. (2023). The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity. doi:10.12688/f1000research.133724.1 |
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Dr Rory Johnson | |
Esposito, R., Polidori, T., Meise, D. F., Pulido-Quetglas, C., Chouvardas, P., Forster, S., et al. (2022). Multi-hallmark long noncoding RNA maps reveal non-small cell lung cancer vulnerabilities. Cell Genomics, 2(9). doi:10.1016/j.xgen.2022.100171 |
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Paczkowska, M., Barenboim, J., Sintupisut, N., Fox, N. S., Zhu, H., Abd-Rabbo, D., et al. (2022). Author Correction: Integrative pathway enrichment analysis of multivariate omics data (Nature Communications, (2020), 11, 1, (735), 10.1038/s41467-019-13983-9). Nature Communications, 13(1). doi:10.1038/s41467-022-32342-9 |
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Shuai, S., Abascal, F., Amin, S. B., Bader, G. D., Bandopadhayay, P., Barenboim, J., et al. (2022). Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower (Nature Communications, (2020), 11, 1, (734), 10.1038/s41467-019-13929-1). Nature Communications, 13(1). doi:10.1038/s41467-022-32343-8 |
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Cmero, M., Yuan, K., Ong, C. S., Schröder, J., Adams, D. J., Anur, P., et al. (2022). Author Correction: Inferring structural variant cancer cell fraction (Nature Communications, (2020), 11, 1, (730), 10.1038/s41467-020-14351-8). Nature Communications, 13(1). doi:10.1038/s41467-022-32338-5 |
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Vancura, A., Gutierrez, A. H., Hennig, T., Pulido-Quetglas, C., Slack, F. J., Johnson, R., & Haefliger, S. (2022). Is Evolutionary Conservation a Useful Predictor for Cancer Long Noncoding RNAs? Insights from the Cancer LncRNA Census 3. Non-coding RNA, 8(6). doi:10.3390/ncrna8060082 |
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Arnan, C., Ullrich, S., Pulido-Quetglas, C., Nurtdinov, R., Esteban, A., Blanco-Fernandez, J., et al. (2022). Paired guide RNA CRISPR-Cas9 screening for protein-coding genes and lncRNAs involved in transdifferentiation of human B-cells to macrophages. BMC Genomics, 23(1). doi:10.1186/s12864-022-08612-7 |
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Rubanova, Y., Shi, R., Harrigan, C. F., Li, R., Wintersinger, J., Sahin, N., et al. (2022). Author Correction: Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig (Nature Communications, (2020), 11, 1, (731), 10.1038/s41467-020-14352-7). Nature Communications, 13(1). doi:10.1038/s41467-022-32336-7 |
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Reyna, M. A., Haan, D., Paczkowska, M., Verbeke, L. P. C., Vazquez, M., Kahraman, A., et al. (2022). Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes (Nature Communications, (2020), 11, 1, (729), 10.1038/s41467-020-14367-0). Nature Communications, 13(1). doi:10.1038/s41467-022-32334-9 |
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Zhang, Y., Chen, F., Fonseca, N. A., He, Y., Fujita, M., Nakagawa, H., et al. (2022). Author Correction: High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations (Nature Communications, (2020), 11, 1, (736), 10.1038/s41467-019-13885-w). Nature Communications, 13(1). doi:10.1038/s41467-022-32333-w |
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Grapotte, M., Saraswat, M., Bessière, C., Menichelli, C., Ramilowski, J. A., Severin, J., et al. (2022). Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (Nature Communications, (2021), 12, 1, (3297), 10.1038/s41467-021-23143-7). Nature Communications, 13(1). doi:10.1038/s41467-022-28758-y |
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Plaisance, I., Chouvardas, P., Sun, Y., Nemir, M., Aghagolzadeh, P., Aminfar, F., et al. (2022). Alternative splicing of a transposable element into the human long noncoding RNA CARMEN is a switch for cardiac precursor cell specification. Journal of Molecular and Cellular Cardiology, 173, S182. doi:10.1016/j.yjmcc.2022.08.344 |
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Aghagolzadeh, P., Plaisance, I., Bernasconi, R., Sarre, A., Nemir, M., Quetglas, C. P., et al. (2022). Single-cell analysis of the long noncoding RNA transcriptome in cardiac fibroblasts identifies FIXER, a novel therapeutic target for fibrosis in the damaged heart. Journal of Molecular and Cellular Cardiology, 173, S39-S40. doi:10.1016/j.yjmcc.2022.08.079 |
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Carlevaro-Fita, J., Lanzós, A., Feuerbach, L., Hong, C., Mas-Ponte, D., Pedersen, J. S., & Johnson, R. (2022). Erratum: Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis (Communications biology (2020) 3 1 (56)). Communications biology, 5(1), 1347. doi:10.1038/s42003-022-03769-z |
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Frankish, A., Carbonell-Sala, S., Diekhans, M., Jungreis, I., Loveland, J. E., Mudge, J. M., et al. (2023). GENCODE: reference annotation for the human and mouse genomes in 2023. Nucleic Acids Research, 51(D1), D942-D949. doi:10.1093/nar/gkac1071 |
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Rheinbay, E., Nielsen, M. M., Abascal, F., Wala, J. A., Shapira, O., Tiao, G., et al. (2023). Erratum: Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes (Nature (2020) 578 7793 (102-111)). Nature, 614(7948), E40. doi:10.1038/s41586-022-05599-9 |
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Aaltonen, L. A., Abascal, F., Abeshouse, A., Aburatani, H., Adams, D. J., Agrawal, N., et al. (2023). Author Correction: Pan-cancer analysis of whole genomes (Nature, (2020), 578, 7793, (82-93), 10.1038/s41586-020-1969-6). Nature, 614(7948), E39. doi:10.1038/s41586-022-05598-w |
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Plaisance, I., Chouvardas, P., Sun, Y., Nemir, M., Aghagolzadeh, P., Aminfar, F., et al. (2023). A transposable element into the human long noncoding RNA CARMEN is a switch for cardiac precursor cell specification. Cardiovascular Research, 119(6), 1361-1376. doi:10.1093/cvr/cvac191 |
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Mattick, J. S., Amaral, P. P., Carninci, P., Carpenter, S., Chang, H. Y., Chen, L. L., et al. (2023). Long non-coding RNAs: definitions, functions, challenges and recommendations. Nature Reviews Molecular Cell Biology, 24(6), 430-447. doi:10.1038/s41580-022-00566-8 |
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Zapatka, M., Borozan, I., Brewer, D. S., Iskar, M., Grundhoff, A., Alawi, M., et al. (2023). Author Correction: The landscape of viral associations in human cancers (Nature Genetics, (2020), 52, 3, (320-330), 10.1038/s41588-019-0558-9). Nature Genetics, 55(6), 1077. doi:10.1038/s41588-023-01316-y |
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Aghagolzadeh, P., Plaisance, I., Bernasconi, R., Treibel, T. A., Pulido Quetglas, C., Wyss, T., et al. (2023). Assessment of the Cardiac Noncoding Transcriptome by Single-Cell RNA Sequencing Identifies FIXER, a Conserved Profibrogenic Long Noncoding RNA. Circulation, 148(9), 778-797. doi:10.1161/CIRCULATIONAHA.122.062601 |
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Dr Julia Jones | |
Franchini, P., Fruciano, C., Wood, T. J., Shastry, V., Goulson, D., Hughes, W. O. H., & Jones, J. C. (2023). Limited introgression from non-native commercial strains and signatures of adaptation in the key pollinator Bombus terrestris. Molecular Ecology. doi:10.1111/mec.17151 |
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Díaz, M. A., O’Connell, D. P., Jordan, S., O’Connor, C., Martin, P., Jones, J. C., & Garvey, J. (2023). Analysis of Pesticide Levels in Honey and Pollen from Irish Honey Bee Colonies Using a Modified Dutch Mini-Luke Method with Gas and Liquid Chromatography-Tandem Mass Spectrometry Detection. Journal of Agricultural and Food Chemistry, 71(34), 12657-12667. doi:10.1021/acs.jafc.3c02250 |
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Dr Joanna Kacprzyk | |
Schwarze, J., Carolan, J. C., Stewart, G. S., McCabe, P. F., & Kacprzyk, J. (2023). The boundary of life and death: changes in mitochondrial and cytosolic proteomes associated with programmed cell death of Arabidopsis thaliana suspension culture cells. Frontiers in Plant Science, 14. doi:10.3389/fpls.2023.1194866 |
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Sherwood, O. L., Carroll, R., Burke, S., McCabe, P. F., & Kacprzyk, J. (2023). A simple and cost-effective method for studying anoxia tolerance in plants. Applications in Plant Sciences, 11(1). doi:10.1002/aps3.11509 |
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Kacprzyk, J., Gunawardena, A. H. L. A. N., Bouteau, F., & McCabe, P. F. (2023). Editorial: Plant programmed cell death revisited, volume II. Frontiers in Plant Science, 14. doi:10.3389/fpls.2023.1281902 |
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Kacprzyk, J., Clune, S., Clark, C., & Kane, A. (2023). Making a greener planet: nature documentaries promote plant awareness. Annals of Botany, 131(2), 255-260. doi:10.1093/aob/mcac149 |
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Dr Adam Kane | |
Murphy, K. J., Griffin, L. L., Nolan, G., Haigh, A., Hochstrasser, T., Ciuti, S., & Kane, A. (2022). Applied autoethnography: A method for reporting best practice in ecological and environmental research. Journal of Applied Ecology, 59(11), 2688-2697. doi:10.1111/1365-2664.14252 |
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Doyle, S., Cabot, D., Griffin, L., Kane, A., Colhoun, K., Redmond, C., et al. (2023). Home range of a long-distance migrant, the Greenland Barnacle Goose Branta leucopsis, throughout the annual cycle. Bird Study, 70(1-2), 37-46. doi:10.1080/00063657.2023.2191924 |
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Kendall, C. J., Bracebridge, C., Lynch, E. C., Mgumba, M., Monadjem, A., Nicholas, A., & Kane, A. (2023). Value of combining transect counts and telemetry data to determine short-term population trends in a globally threatened species. Conservation Biology. doi:10.1111/cobi.14146 |
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Kane, A., & Amin, B. (2023). Amending the literature through version control. Biology Letters, 19(1). doi:10.1098/rsbl.2022.0463 |
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Kane, A., Healy, K., & Ruxton, G. D. (2023). Was Allosaurus really predominantly a scavenger?. Ecological Modelling, 476. doi:10.1016/j.ecolmodel.2022.110247 |
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Kacprzyk, J., Clune, S., Clark, C., & Kane, A. (2023). Making a greener planet: nature documentaries promote plant awareness. Annals of Botany, 131(2), 255-260. doi:10.1093/aob/mcac149 |
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Monadjem, A., Healy, K., Guillerme, T., & Kane, A. (2023). Dispersal ability is associated with contrasting patterns of beta diversity in African small mammal communities. Journal of Biogeography, 50(3), 539-550. doi:10.1111/jbi.14532
Clark, B. L., Carneiro, A. P. B., Pearmain, E. J., Rouyer, M. M., Clay, T. A., Cowger, W., et al. (2023). Global assessment of marine plastic exposure risk for oceanic birds. Nature communications, 14(1), 3665. doi:10.1038/s41467-023-38900-z
Griffin, L. L., Nolan, G., Haigh, A., Condon, H., O'Hagan, E., McDonnell, P., et al. (2023). How can we tackle interruptions to human–wildlife feeding management? Adding media campaigns to the wildlife manager's toolbox. People and Nature, 5(4), 1299-1315. doi:10.1002/pan3.10499
Rodríguez-González, P. M., Abraham, E., Aguiar, F., Andreoli, A., Baležentiene, L., Berisha, N., et al. (2022). Bringing the margin to the focus: 10 challenges for riparian vegetation science and management. Wiley Interdisciplinary Reviews: Water, 9(5). doi:10.1002/wat2.1604
Alimpic, F., Milovanovic, J., Pielech, R., Hinkov, G., Jansson, R., Dufour, S., et al. (2022). The status and role of genetic diversity of trees for the conservation and management of riparian ecosystems: A European experts' perspective. Journal of Applied Ecology, 59(10), 2476-2485. doi:10.1111/1365-2664.14247
Farrell, C. A., Coleman, L., Norton, D., Kelly-Quinn, M., Kinsella, S., Obst, C., et al. (2022). Applying ecosystem accounting to develop a risk register for peatlands and inform restoration targets at catchment scale: a case study from the European region. Restoration Ecology, 30(8). doi:10.1111/rec.13632
Tighe, A. J., Grayson, S., Byrne, J., Hintikka, S., Jessen, L., Dempsey, J., et al. (2022). Nanopore metatranscriptomics reveals cryptic catfish species as potential Shigella flexneri vectors in Kenya. Scientific Reports, 12(1). doi:10.1038/s41598-022-17036-y
Penk, M. R., Bruen, M., Feld, C. K., Piggott, J. J., Christie, M., Bullock, C., & Kelly-Quinn, M. (2022). Using weighted expert judgement and nonlinear data analysis to improve Bayesian belief network models for riverine ecosystem services. Science of the Total Environment, 851. doi:10.1016/j.scitotenv.2022.158065
Melaku, A., Addis, T., Mengistie, B., Kanno, G. G., Adane, M., Kelly-Quinn, M., et al. (2023). Menstrual hygiene management practices and determinants among schoolgirls in Addis Ababa, Ethiopia: The urgency of tackling bottlenecks - Water and sanitation services. Heliyon, 9(5). doi:10.1016/j.heliyon.2023.e15893
Gorzelak, P., Kolbuk, D., Stolarski, J., Bacal, P., Januszewicz, B., Duda, P., et al. (2023). A Devonian crinoid with a diamond microlattice. Proceedings of the Royal Society B: Biological Sciences, 290(1995). doi:10.1098/rspb.2023.0092
Salamon, M. A., Brachaniec, T., Paszcza, K., Kolbuk, D., & Gorzelak, P. (2023). The role of mass extinction events in shaping the body-size dynamics of fossil crinoids. Palaeogeography, Palaeoclimatology, Palaeoecology, 622. doi:10.1016/j.palaeo.2023.111593
Papathanasiou, F., Ninou, E., Mylonas, I., Baxevanos, D., Papadopoulou, F., Avdikos, I., et al. (2022). The Evaluation of Common Bean (Phaseolus vulgaris L.) Genotypes under Water Stress Based on Physiological and Agronomic Parameters. Plants, 11(18). doi:10.3390/plants11182432
Annicchiarico, P., de Buck, A. J., Vlachostergios, D. N., Heupink, D., Koskosidis, A., Nazzicari, N., & Crosta, M. (2023). White Lupin Adaptation to Moderately Calcareous Soils: Phenotypic Variation and Genome-Enabled Prediction. Plants, 12(5). doi:10.3390/plants12051139
Lastovetsky, O. A., Caruso, T., Brennan, F. P., Wall, D. P., McMahon, S., & Doyle, E. (2022). Evidence of a selective and bi-directional relationship between arbuscular mycorrhizal fungal and bacterial communities co-inhabiting plant roots. Environmental Microbiology, 24(11), 5378-5391. doi:10.1111/1462-2920.16227
Mitchell, M., Nguyen, S. V., MacOri, G., Bolton, D., McMullan, G., Drudy, D., & Fanning, S. (2022). Clostridioides difficile as a Potential Pathogen of Importance to One Health: A Review. Foodborne Pathogens and Disease, 19(12), 806-816. doi:10.1089/fpd.2022.0037
Zhu, X., Patange, A. D., Macori, G., Sun, D. W., & Tiwari, B. K. (2022). Impact of high pressure treatment on shelf life and microbial profile of wild harvested Ascophyllum nodosum and aquacultured Alaria esculenta during storage. LWT, 170. doi:10.1016/j.lwt.2022.114022
Wall, K., Macori, G., Koolman, L., Li, F., & Fanning, S. (n.d.). Klebsiella, a Hitherto Underappreciated Zoonotic Pathogen of Importance to One Health: A Short Review. Zoonoses, 3(1). doi:10.15212/zoonoses-2023-0016
Russell, T., Macori, G., Russell, L., Mulcahy, G., Sammin, D., Fanning, S., & Barry, G. (2023). Persistence and recovery of SARS-CoV-2 from abiotic and biotic surfaces found in meat processing plants. Journal of Food Safety. doi:10.1111/jfs.13086
Schilling, S., Melzer, R., Dowling, C. A., Shi, J., Muldoon, S., & McCabe, P. F. (2023). A protocol for rapid generation cycling (speed breeding) of hemp (Cannabis sativa) for research and agriculture. Plant Journal, 113(3), 437-445. doi:10.1111/tpj.16051
Melzer, R. (2023). Flowering Newsletter 2023. Journal of Experimental Botany, 74(15), 4291-4292. doi:10.1093/jxb/erad258
Murphy, K. J., Morera-Pujol, V., Ryan, E., Byrne, A. W., Breslin, P., & Ciuti, S. (2022). Habitat availability alters the relative risk of a bovine tuberculosis breakdown in the aftermath of a commercial forest clearfell disturbance. Journal of Applied Ecology, 59(9), 2333-2345. doi:10.1111/1365-2664.14233
Morera-Pujol, V., Catry, P., Magalhães, M., Péron, C., Reyes-González, J. M., Granadeiro, J. P., et al. (2023). Methods to detect spatial biases in tracking studies caused by differential representativeness of individuals, populations and time. Diversity and Distributions, 29(1), 19-38. doi:10.1111/ddi.13642
Keenan, S., Niedziela, D., Morera-Pujol, V., Franklin, D., Murphy, K. J., Ciuti, S., & McMahon, B. J. (2023). Zoonotic disease classification in wildlife: a theoretical framework for researchers. Mammal Review. doi:10.1111/mam.12329
Morera-Pujol, V., Mostert, P. S., Murphy, K. J., Burkitt, T., Coad, B., McMahon, B. J., et al. (2023). Bayesian species distribution models integrate presence-only and presence–absence data to predict deer distribution and relative abundance. Ecography, 2023(2). doi:10.1111/ecog.06451
He, M., Xin, X., Meng, L., Yan, X., Zhao, C., Cai, Z., et al. (2023). Long-term appropriate N management can continuously enhance gross N mineralization rates and crop yields in a maize-wheat rotation system. Biology and Fertility of Soils, 59(5), 501-511. doi:10.1007/s00374-021-01595-9
Langan, P., Bernád, V., Walsh, J., Henchy, J., Khodaeiaminjan, M., Mangina, E., & Negrão, S. (2022). Phenotyping for waterlogging tolerance in crops: current trends and future prospects. Journal of Experimental Botany, 73(15), 5149-5169. doi:10.1093/jxb/erac243
Deshaies, M., Lamari, N., Ng, C. K. Y., Ward, P., & Doohan, F. M. (2022). The impact of chitosan on the early metabolomic response of wheat to infection by Fusarium graminearum. BMC Plant Biology, 22(1). doi:10.1186/s12870-022-03451-w
O'Connell, D. P., Kelly, D. J., Akbar, P. G., Monkhouse, J., Kelly, S. B. A., Simcox, W., et al. (2022). Breeding records of the birds of south-east Sulawesi, Indonesia: a collation of observations encompassing nearly 20 years of research in Wallacea. Bulletin of the British Ornithologists' Club, 142(3), 278-301. doi:10.25226/bboc.v142i3.2022.a2
Struebig, M. J., Aninta, S. G., Beger, M., Bani, A., Barus, H., Brace, S., et al. (2022). Safeguarding Imperiled Biodiversity and Evolutionary Processes in the Wallacea Center of Endemism. BioScience, 72(11), 1118-1130. doi:10.1093/biosci/biac085
Csergo, A. M., Healy, K., O'Connell, D. P., Baudraz, M. E. A., Kelly, D. J., Ó Marcaigh, F., et al. (2023). Spatial phenotypic variability is higher between island populations than between mainland populations worldwide. Ecography. doi:10.1111/ecog.06787
Ross, S. R. P. J., O'Connell, D. P., Deichmann, J. L., Desjonquères, C., Gasc, A., Phillips, J. N., et al. (2023). Passive acoustic monitoring provides a fresh perspective on fundamental ecological questions. Functional Ecology, 37(4), 959-975. doi:10.1111/1365-2435.14275
Marcaigh, F., Kelly, D. J., O’Connell, D. P., Analuddin, K., Karya, A., McCloughan, J., et al. (2023). Small islands and large biogeographic barriers have driven contrasting speciation patterns in Indo-Pacific sunbirds (Aves: Nectariniidae). Zoological Journal of the Linnean Society, 198(1), 72-92. doi:10.1093/zoolinnean/zlac081
Irham, M., Prawiradilaga, D. M., Menner, J. K., O'Connell, D. P., Kelly, D. J., Analuddin, K., et al. (2023). A distinct new species of Zosterops white-eye from the Sulawesi region, Indonesia. Ibis, 165(3), 808-816. doi:10.1111/ibi.13148
Díaz, M. A., O’Connell, D. P., Jordan, S., O’Connor, C., Martin, P., Jones, J. C., & Garvey, J. (2023). Analysis of Pesticide Levels in Honey and Pollen from Irish Honey Bee Colonies Using a Modified Dutch Mini-Luke Method with Gas and Liquid Chromatography-Tandem Mass Spectrometry Detection. Journal of Agricultural and Food Chemistry, 71(34), 12657-12667. doi:10.1021/acs.jafc.3c02250
Penk, M. R., & Perrin, P. M. (2022). Variability of Plant and Surface Soil Carbon Concentration Among Saltmarsh Habitats in Ireland. Estuaries and Coasts, 45(6), 1631-1645. doi:10.1007/s12237-021-01042-w
Mack, L., de la Hoz, C. F., Penk, M., Piggott, J., Crowe, T., Hering, D., et al. (2022). Perceived multiple stressor effects depend on sample size and stressor gradient length. Water Research, 226. doi:10.1016/j.watres.2022.119260
Lynch, K. E., Penk, M. R., Perrin, P. M., & Piggott, J. J. (2022). Cattle Grazing of a Celtic Sea Saltmarsh Affects Invertebrate Community Composition and Biomass, but not Diversity. Wetlands, 42(8). doi:10.1007/s13157-022-01643-6
Penk, M. R., Bruen, M., Feld, C. K., Piggott, J. J., Christie, M., Bullock, C., & Kelly-Quinn, M. (2022). Using weighted expert judgement and nonlinear data analysis to improve Bayesian belief network models for riverine ecosystem services. Science of the Total Environment, 851. doi:10.1016/j.scitotenv.2022.158065
Assoc Professor Antoinette Perry
Silva, R., Glennon, K., Metoudi, M., Moran, B., Salta, S., Slattery, K., et al. (2023). Unveiling the epigenomic mechanisms of acquired platinum-resistance in high-grade serous ovarian cancer. International Journal of Cancer, 153(1), 120-132. doi:10.1002/ijc.34496
Wilkinson, G. S., Adams, D. M., Haghani, A., Lu, A. T., Zoller, J., Breeze, C. E., et al. (2022). Author Correction: DNA methylation predicts age and provides insight into exceptional longevity of bats (Nature Communications, (2021), 12, 1, (1615), 10.1038/s41467-021-21900-2). Nature Communications, 13(1). doi:10.1038/s41467-022-33102-5
Power, M. L., Foley, N. M., Jones, G., & Teeling, E. C. (2022). Taking flight: An ecological, evolutionary and genomic perspective on bat telomeres. Molecular Ecology, 31(23), 6053-6068. doi:10.1111/mec.16117
Wilson, D., Mackin, F., Tuovinen, J. P., Moser, G., Farrell, C., & Renou-Wilson, F. (2022). Carbon and climate implications of rewetting a raised bog in Ireland. Global Change Biology, 28(21), 6349-6365. doi:10.1111/gcb.16359
Aitova, E., Morley, T., Wilson, D., & Renou-Wilson, F. (2023). A review of greenhouse gas emissions and removals from Irish peatlands. Mires and Peat, 29. doi:10.19189/MaP.2022.SNPG.StA.2414
Jarmain, C., Cummins, T., Jovani-Sancho, A. J., Nairn, T., Premrov, A., Reidy, B., et al. (2023). Soil organic carbon stocks by soil group for afforested soils in Ireland. Geoderma Regional, 32. doi:10.1016/j.geodrs.2023.e00615
Mozafari, B., Bruen, M., Donohue, S., Renou-Wilson, F., & O'Loughlin, F. (2023). Peatland dynamics: A review of process-based models and approaches. Science of the Total Environment, 877. doi:10.1016/j.scitotenv.2023.162890
Amin, B., Jennings, D. J., Norman, A., Ryan, A., Ioannidis, V., Magee, A., et al. (2022). Neonate personality affects early-life resource acquisition in a large social mammal. Behavioral Ecology, 33(5), 1025-1035. doi:10.1093/beheco/arac072
Schilling, S., Melzer, R., Dowling, C. A., Shi, J., Muldoon, S., & McCabe, P. F. (2023). A protocol for rapid generation cycling (speed breeding) of hemp (Cannabis sativa) for research and agriculture. Plant Journal, 113(3), 437-445. doi:10.1111/tpj.16051
Zhong, C., Lyons, T., Heussaff, O., Doyle, E., O'Hara, E., Waters, S. M., et al. (2022). Localization of urea transporter B in the developing bovine rumen. Animal Nutrition, 10, 216-222. doi:10.1016/j.aninu.2022.03.006
McLaughlin, D., Griffin, L. L., Ciuti, S., & Stewart, G. (2022). Wildlife feeding activities induce papillae proliferation in the rumen of fallow deer. Mammal Research, 67(4), 525-530. doi:10.1007/s13364-022-00647-1
McLaughlin, D., Griffin, L. L., Ciuti, S., & Stewart, G. (2023). Correction to: Wildlife feeding activities induce papillae proliferation in the rumen of fallow deer (Mammal Research, (2022), 67, 4, (525-530), 10.1007/s13364-022-00647-1). Mammal Research, 68(1), 127. doi:10.1007/s13364-022-00650-6
Schwarze, J., Carolan, J. C., Stewart, G. S., McCabe, P. F., & Kacprzyk, J. (2023). The boundary of life and death: changes in mitochondrial and cytosolic proteomes associated with programmed cell death of Arabidopsis thaliana suspension culture cells. Frontiers in Plant Science, 14. doi:10.3389/fpls.2023.1194866
Stewart, G. (n.d.). SLC14 family of facilitative urea transporters in GtoPdb v.2023.1. IUPHAR/BPS Guide to Pharmacology CITE, 2023(1). doi:10.2218/gtopdb/f186/2023.1
Natarajan, S., Balachandar, D., Senthil, N., Velazhahan, R., & Paranidharan, V. (2022). Volatiles of antagonistic soil yeasts inhibit growth and aflatoxin production of Aspergillus flavus. Microbiological Research, 263. doi:10.1016/j.micres.2022.127150
Wilkinson, G. S., Adams, D. M., Haghani, A., Lu, A. T., Zoller, J., Breeze, C. E., et al. (2022). Author Correction: DNA methylation predicts age and provides insight into exceptional longevity of bats (Nature Communications, (2021), 12, 1, (1615), 10.1038/s41467-021-21900-2). Nature Communications, 13(1). doi:10.1038/s41467-022-33102-5
Power, M. L., Foley, N. M., Jones, G., & Teeling, E. C. (2022). Taking flight: An ecological, evolutionary and genomic perspective on bat telomeres. Molecular Ecology, 31(23), 6053-6068. doi:10.1111/mec.16117
Nolan, J. M., Skujina, I., Hurpy, G., & Teeling, E. C. (2023). FIRST EVIDENCE OF THE CINNABAR MOTH TYRIA JACOBAEAE PRESENT IN THE DIET OF THE BROWN LONG-EARED BAT PLECOTUS AURITUS. Biology and Environment, 123(B2), 57-65. doi:10.1353/bae.2023.a901466
Simmons, N. B., Ingala, M. R., Pieri, M., Volkert, T. L., Singh, L. N., Philip, P., et al. (2023). The genome sequence of Molossus nigricans (Chiroptera, Molossidae; Miller, 1902). Wellcome Open Research, 8. doi:10.12688/wellcomeopenres.18724.1
Lu, A. T., Fei, Z., Haghani, A., Robeck, T. R., Zoller, J. A., Li, C. Z., et al. (2023). Author Correction: Universal DNA methylation age across mammalian tissues (Nature Aging, (2023), 10.1038/s43587-023-00462-6).Nature Aging. doi:10.1038/s43587-023-00499-7
Déjosez, M., Marin, A., Hughes, G. M., Morales, A. E., Godoy-Parejo, C., Gray, J. L., et al. (2023). Bat pluripotent stem cells reveal unusual entanglement between host and viruses. Cell, 186(5), 957-974.e28. doi:10.1016/j.cell.2023.01.011
Kaplow, I. M., Sestili, H. H., Prasad, K., Brown, A. R., Foley, K., Pfenning, A. R., et al. (2023). Relating enhancer genetic variation across mammals to complex phenotypes using machine learning. Science, 380(6643). doi:10.1126/SCIENCE.ABM7993
Phalke, N., Andrews, G., Armstrong, J. C., Bianchi, M., Birren, B. W., Bredemeyer, K. R., et al. (2023). Mammalian evolution of human cis-regulatory elements and transcription factor binding sites. Science, 380(6643). doi:10.1126/SCIENCE.ABN7930
Supple, M. A., Subramanian, A., Mudide, A., Serres-Armero, A., Fuentes, V. M., Foley, K., et al. (2023). The contribution of historical processes to contemporary extinction risk in placental mammals. Science, 380(6643). doi:10.1126/SCIENCE.ABN5856
Moon, K. L., Huson, H. J., Morrill, K., Wang, M. S., Srikanth, K., Svenson, G. J., et al. (2023). Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs. Science, 380(6643). doi:10.1126/SCIENCE.ABN5887
Goodman, D. B., Lind, A. L., Redlich, R. W., Brown, A. R., Teeling, E. C., Andrews, G., et al. (2023). Evolutionary constraint and innovation across hundreds of placental mammals. Science, 380(6643). doi:10.1126/SCIENCE.ABN3943
Paulat, N. S., Storer, J. M., Moreno-Santillán, D. D., Osmanski, A. B., Sullivan, K. A. M., Grimshaw, J. R., et al. (2023). Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia. Molecular Biology and Evolution, 40(5). doi:10.1093/molbev/msad092
Bapteste, E., Huneman, P., Keller, L., Teulière, J., Lopez, P., Teeling, E. C., et al. (2023). Expanding evolutionary theories of ageing to better account for symbioses and interactions throughout the Web of Life. Ageing Research Reviews, 89. doi:10.1016/j.arr.2023.101982
Haghani, A., Li, C. Z., Robeck, T. R., Zhang, J., Lu, A. T., Ablaeva, J., et al. (2023). DNA methylation networks underlying mammalian traits. Science, 381(6658). doi:10.1126/science.abq5693
Schneor, L., Kaltenbach, S., Friedman, S., Tussia-Cohen, D., Nissan, Y., Shuler, G., et al. (2023). Comparison of antiviral responses in two bat species reveals conserved and divergent innate immune pathways. iScience, 26(8). doi:10.1016/j.isci.2023.107435
Ruedi, M., Vernes, S. C., Teeling, E. C., & Mai, M. (n.d.). The genome sequence of the Soprano Pipistrelle, Pipistrellus pygmaeus (Leach, 1825). Wellcome Open Research, 8, 360. doi:10.12688/wellcomeopenres.19895.1
van der Kooij, J., Vernes, S. C., Teeling, E. C., Mai, M., Johannessen, L. E., & Gundersen, G. (n.d.). The genome sequence of the northern bat, Eptesicus nilssonii (Keyserling & Blasius, 1839). Wellcome Open Research, 8, 362. doi:10.12688/wellcomeopenres.19896.1
Tighe, A. J., Grayson, S., Byrne, J., Hintikka, S., Jessen, L., Dempsey, J., et al. (2022). Nanopore metatranscriptomics reveals cryptic catfish species as potential Shigella flexneri vectors in Kenya. Scientific Reports, 12(1). doi:10.1038/s41598-022-17036-y
Pierattini, B., D'Agostino, S., Bon, C., Peruzzo, O., Alendar, A., Codino, A., et al. (2023). SINEUP non-coding RNA activity depends on specific N6-methyladenosine nucleotides. Molecular Therapy - Nucleic Acids, 32, 402-414. doi:10.1016/j.omtn.2023.04.002
Dr Katharina Wollenberg Valero
Miralles, A., Köhler, J., Glaw, F., Wollenberg Valero, K. C., Crottini, A., Rosa, G. M., et al. (2023). An endless harvest: integrative revision of the Gephyromantis boulengeri and G. blanci complexes reveals six new species of mantellid frogs from Madagascar. Salamandra, 59(1), 1-41.
Mincarelli, L. F., Chapman, E. C., Rotchell, J. M., Turner, A. P., & Wollenberg Valero, K. C. (2023). Sex and gametogenesis stage are strong drivers of gene expression in Mytilus edulis exposed to environmentally relevant plasticiser levels and pH 7.7. Environmental Science and Pollution Research, 30(9), 23437-23449. doi:10.1007/s11356-022-23801-3
Barry, A., Samuel, S. F., Hosni, I., Moursi, A., Feugere, L., Sennett, C. J., et al. (2023). Investigating the effects of arginine methylation inhibitors on microdissected brain tumour biopsies maintained in a miniaturised perfusion system. Lab on a Chip, 23(11), 2664-2682. doi:10.1039/d3lc00204g
Feugere, L., Bates, A., Emagbetere, T., Chapman, E., Malcolm, L. E., Bulmer, K., et al. (2023). Heat induces multiomic and phenotypic stress propagation in zebrafish embryos.. PNAS nexus, 2(5), pgad137. doi:10.1093/pnasnexus/pgad137
Gaul, W., Sadykova, D., White, H. J., León-Sánchez, L., Caplat, P., Emmerson, M. C., & Yearsley, J. M. (2022). Modelling the distribution of rare invertebrates by correcting class imbalance and spatial bias. Diversity and Distributions, 28(10), 2171-2186. doi:10.1111/ddi.13619
Karbassioon, A., Yearlsey, J., Dirilgen, T., Hodge, S., Stout, J. C., & Stanley, D. A. (2023). Responses in honeybee and bumblebee activity to changes in weather conditions. Oecologia, 201(3), 689-701. doi:10.1007/s00442-023-05332-x
Browett, S. S., Synnott, R., O'Meara, D. B., Antwis, R. E., Browett, S. S., Bown, K. J., et al. (2023). Resource competition drives an invasion-replacement event among shrew species on an island. Journal of Animal Ecology, 92(3), 698-709. doi:10.1111/1365-2656.13855
Assoc Professor Jens Carlsson | |
Reynaud, E., Gutierrez-Heredia, L., Garbett, A., Horn, E., Carlsson, J., & Collins, P. (2023). Rise of the Cybercrabs: how digital cloning in an integrated taxonomic framework can support deep-sea exploration. doi:10.1101/2023.03.16.532964 |
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Dr Simone Ciuti | |
Murphy, K., Smith, A., English, H., Morera-Pujol, V., Kane, A., Jackson, A., & Ciuti, S. (2023). GIS-integrated agent-based simulations to model wolf reintroduction management scenarios in Ireland.. doi:10.22541/au.169070953.36409085/v1 |
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Byrne, A., Allen, A., Ciuti, S., Gormley, E., Kelly, D., Marks, N., . . . Tsai, M. -S. (n.d.). Badger Ecology, Bovine Tuberculosis, and Population Management: Lessons From the Island of Ireland. doi:10.2139/ssrn.4550866 |
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Conteddu, K., English, H., Byrne, A., Amin, B., Griffin, L., Kaur, P., et al. (2023). Curbing zoonotic disease spread in multi-host-species systems will require integrating novel data streams and analytical approaches: evidence from a scoping review of bovine tuberculosis. doi:10.1101/2023.05.08.539893 |
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Kaur, P., Ciuti, S., Ossi, F., Cagnacci, F., Morellet, N., Loison, A., et al. (2023). Assessing bias and robustness of social network metrics using GPS based radio-telemetry data. doi:10.1101/2023.03.30.534779 |
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Murphy, K., Ciuti, S., Burkitt, T., & Morera-Pujol, V. (2023). Bayesian areal disaggregation regression to predict wildlife distribution and relative density with low-resolution data. doi:10.1101/2023.01.12.523783 |
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McLaughlin, D., Griffin, L., Zhong, C., Fraser, L. B., Nolan, J., Garcia, E. L., et al. (2023). Dietary regulation of ruminal UT-B2 urea transporters in adult male fallow deer bucks: effects of season and wildlife feeding activity.. doi:10.22541/au.168190052.22338704/v1 |
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Amin, B., Fishman, R., Quinn, M., Matas, D., Palme, R., Koren, L., & Ciuti, S. (2023). Sex differences in the relationship between maternal and foetal glucocorticoids in a free-ranging large mammal. doi:10.1101/2023.05.04.538920 |
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Conteddu, K., Wilson, K., Amin, B., Chari, S., Haigh, A., Griffin, L. L., et al. (2023). Fawn bedsite selection by a large ungulate living in a peri-urban area. doi:10.1101/2023.08.11.552922 |
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Faull, J., Conteddu, K., Griffin, L. L., Amin, B., Smith, A. F., Haigh, A., & Ciuti, S. (2023). Does fear of humans predict anti-predator strategies in an ungulate hider species during fawning?. doi:10.1101/2023.08.16.553188 |
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Brock, C., Morera-Pujol, V., Murphy, K. J., Nieuwenhuis, M., & Ciuti, S. (2023). Predicting forest damage using relative abundance of multiple deer species and national forest inventory data. doi:10.1101/2023.08.17.553670 |
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Faull, J., Conteddu, K., Griffin, L. L., Amin, B., Smith, A. F., Haigh, A., & Ciuti, S. (2023). Does fear of humans predict anti-predator strategies in an ungulate hider species during fawning?. doi:10.21203/rs.3.rs-3272704/v1 |
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Professor Evelyn Doyle | |
Lastovetsky, O. A., Caruso, T., Brennan, F. P., Wall, D., Pylni, S., & Doyle, E. (2023). Community structure of known and previously unknown endobacteria associated with spores of arbuscular mycorrhizal fungi. doi:10.1101/2023.07.25.550273 |
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Mr Zixia Huang | |
Huang, Z., Jiang, C., Gu, J., Uvizl, M., Power, S., Douglas, D., & Kacprzyk, J. (2023). Duplications of human longevity-associated genes across placental mammals. doi:10.1101/2023.05.02.539026 |
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Uvizl, M., Puechmaille, S., Power, S., Pippel, M., Carthy, S., Haerty, W., et al. (2023). Comparative genome microsynteny illuminates the fast evolution of nuclear mitochondrial segments (NUMTs) in mammals. doi:10.1101/2023.04.20.537758 |
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Hiller, M., Morales, A., Ahmed, A., Hilgers, L., Kirilenko, B., Kontopoulos, D., et al. (2023). Reference-quality bat genomes illuminate adaptations to viral tolerance and disease resistance. doi:10.21203/rs.3.rs-2557682/v1 |
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Dr Graham Hughes | |
Déjosez, M., Marin, A., Hughes, G. M., Morales, A. E., Godoy-Parejo, C., Gray, J., et al. (2022). Bat pluripotent stem cells reveal unique entanglement between host and viruses. doi:10.1101/2022.09.23.509261 |
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Hiller, M., Morales, A., Ahmed, A., Hilgers, L., Kirilenko, B., Kontopoulos, D., et al. (2023). Reference-quality bat genomes illuminate adaptations to viral tolerance and disease resistance. doi:10.21203/rs.3.rs-2557682/v1 |
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Dr Rory Johnson | |
Vancura, A., Gutierrez, A. H., Hennig, T., Pulido-Quetglas, C., Slack, F., Johnson, R., & Häfliger, S. (2022). Is evolutionary conservation a useful predictor for cancer long noncoding RNAs? Insights from the Cancer lncRNA Census 3. doi:10.1101/2022.09.01.506261 |
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Chouvardas, P., Dhaka, B., Zimmerli, M., Hanhart, D., Moser, M., Guillen-Ramirez, H., et al. (2022). Functional identification of cis-regulatory long noncoding RNAs at controlled false-discovery rates. doi:10.1101/2022.09.18.508380 |
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Dr Joanna Kacprzyk | |
Huang, Z., Jiang, C., Gu, J., Uvizl, M., Power, S., Douglas, D., & Kacprzyk, J. (2023). Duplications of human longevity-associated genes across placental mammals. doi:10.1101/2023.05.02.539026 |
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Burke, R., McCabe, A., Sonawane, N. R., Rathod, M. H., Whelan, C., McCabe, P., & Kacprzyk, J. (2023). Arabidopsis cell suspension culture and RNA sequencing reveal regulatory networks underlying plant programmed cell death. doi:10.1101/2023.03.14.532467 |
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Dr Adam Kane | |
Murphy, K., Smith, A., English, H., Morera-Pujol, V., Kane, A., Jackson, A., & Ciuti, S. (2023). GIS-integrated agent-based simulations to model wolf reintroduction management scenarios in Ireland.. doi:10.22541/au.169070953.36409085/v1 |
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Dr Olga Lastovetsky | |
Lastovetsky, O. A., Caruso, T., Brennan, F. P., Wall, D., Pylni, S., & Doyle, E. (2023). Community structure of known and previously unknown endobacteria associated with spores of arbuscular mycorrhizal fungi. doi:10.1101/2023.07.25.550273 |
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Dr Rainer Melzer | |
Dowling, C., Shi, J., Toth, J., Quade, M., Smart, L., McCabe, P., et al. (2023). A<i>FLOWERING LOCUS T</i>ortholog is associated with photoperiod-insensitive flowering in hemp (<i>Cannabis sativa</i>L.). doi:10.1101/2023.04.21.537862 |
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Dr Virginia Morera-Pujol | |
Conteddu, K., English, H., Byrne, A., Amin, B., Griffin, L., Kaur, P., et al. (2023). Curbing zoonotic disease spread in multi-host-species systems will require integrating novel data streams and analytical approaches: evidence from a scoping review of bovine tuberculosis. doi:10.1101/2023.05.08.539893 |
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Murphy, K., Ciuti, S., Burkitt, T., & Morera-Pujol, V. (2023). Bayesian areal disaggregation regression to predict wildlife distribution and relative density with low-resolution data. doi:10.1101/2023.01.12.523783 |
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Murphy, K., Smith, A., English, H., Morera-Pujol, V., Kane, A., Jackson, A., & Ciuti, S. (2023). GIS-integrated agent-based simulations to model wolf reintroduction management scenarios in Ireland.. doi:10.22541/au.169070953.36409085/v1 |
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Brock, C., Morera-Pujol, V., Murphy, K. J., Nieuwenhuis, M., & Ciuti, S. (2023). Predicting forest damage using relative abundance of multiple deer species and national forest inventory data. doi:10.1101/2023.08.17.553670 |
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Dr Darren O'Connell | |
Csergo, A., Healy, K., Baudraz, M., Kelly, D., O’Connell, D., Marcaigh, F. Ó., et al. (2022). Spatial phenotypic variability is higher between island than mainland populations worldwide. doi:10.22541/au.166420114.49052856/v1 |
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Csergo, A. M., Healy, K., O'Connell, D., Baudraz, M., Kelly, D., Ó'Marcaigh, F., et al. (2023). Spatial phenotypic variability is higher between island populations than between mainland populations worldwide. doi:10.22541/au.167542026.68326456/v1 |
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Dr Megan Power | |
Kosch, T., Crawford, A., Mueller, R. L., Wollenberg Valero, K., Power, M., Rodríguez, A., et al. (2023). Comparative analysis of amphibian genomes: an emerging resource for basic and applied research. doi:10.1101/2023.02.27.530355 |
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Mr Andrew Ryan | |
Purves, K., Brown, H., Haverty, R., Ryan, A., Griffin, L. L., McCormack, J., et al. (2023). First Eurasian cases of SARS-CoV-2 seropositivity in a free-ranging urban population of wild fallow deer. doi:10.1101/2023.07.07.547941 |
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Conteddu, K., Wilson, K., Amin, B., Chari, S., Haigh, A., Griffin, L. L., et al. (2023). Fawn bedsite selection by a large ungulate living in a peri-urban area. doi:10.1101/2023.08.11.552922 |
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Dr Susanne Schilling | |
Dowling, C., Shi, J., Toth, J., Quade, M., Smart, L., McCabe, P., et al. (2023). A<i>FLOWERING LOCUS T</i>ortholog is associated with photoperiod-insensitive flowering in hemp (<i>Cannabis sativa</i>L.). doi:10.1101/2023.04.21.537862 |
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Dr Gavin Stewart | |
McLaughlin, D., Griffin, L., Zhong, C., Fraser, L. B., Nolan, J., Garcia, E. L., et al. (2023). Dietary regulation of ruminal UT-B2 urea transporters in adult male fallow deer bucks: effects of season and wildlife feeding activity.. doi:10.22541/au.168190052.22338704/v1 |
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Professor Emma Teeling | |
Déjosez, M., Marin, A., Hughes, G. M., Morales, A. E., Godoy-Parejo, C., Gray, J., et al. (2022). Bat pluripotent stem cells reveal unique entanglement between host and viruses. doi:10.1101/2022.09.23.509261 |
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Uvizl, M., Puechmaille, S., Power, S., Pippel, M., Carthy, S., Haerty, W., et al. (2023). Comparative genome microsynteny illuminates the fast evolution of nuclear mitochondrial segments (NUMTs) in mammals. doi:10.1101/2023.04.20.537758 |
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Hiller, M., Morales, A., Ahmed, A., Hilgers, L., Kirilenko, B., Kontopoulos, D., et al. (2023). Reference-quality bat genomes illuminate adaptations to viral tolerance and disease resistance. doi:10.21203/rs.3.rs-2557682/v1 |
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Paulat, N. S., Storer, J. M., Moreno-Santillán, D. D., Osmanski, A. B., Sullivan, K. A. M., Grimshaw, J. R., et al. (2023). Chiropterans are a hotspot for horizontal transfer of DNA transposons in Mammalia. doi:10.1101/2023.03.23.533946 |
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Schneor, L., Kaltenbach, S., Fridman, S., Nissan, Y., Shuler, G., Fraimovitch, E., et al. (2023). A comparative analysis of the antiviral response in two bat species reveals conserved and divergent innate immune pathways. doi:10.1101/2023.04.23.537989 |
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Mr Conor Whelan | |
Burke, R., McCabe, A., Sonawane, N. R., Rathod, M. H., Whelan, C., McCabe, P., & Kacprzyk, J. (2023). Arabidopsis cell suspension culture and RNA sequencing reveal regulatory networks underlying plant programmed cell death. doi:10.1101/2023.03.14.532467 |
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Dr Katharina Wollenberg Valero | |
Feugere, L., De Freitas, C. S., Bates, A., Storey, K., Beltran-Alvarez, P., & Valero, K. W. (2023). Consequences of directly- and indirectly-experienced heat stress in a mutagenic environment. doi:10.1101/2023.10.03.560724 |
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Kosch, T., Crawford, A., Mueller, R. L., Wollenberg Valero, K., Power, M., Rodríguez, A., et al. (2023). Comparative analysis of amphibian genomes: an emerging resource for basic and applied research. doi:10.1101/2023.02.27.530355 |
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Dr Jonathan Yearsley | |
Sadykova, D., Yearsley, J. M., Aderhold, A., Dondelinger, F., White, H. J., Sanchez, L. L., et al. (2023). Weak interactions cause poor performance of common network inference models. doi:10.1101/2023.06.22.546059 |
Dr Jan-Robert Baars | |
Baars, J. -R., Flynn, O., Swanwick, H., & O'Leary, K. (2022). The Quagga mussel in the Shannon catchment: distribution, ecology and risk of dispersal. Ireland: LBAF. |
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Baars, J. -R. (2022). Control of American Skunk Cabbage (Lysichiton americanus) on the River Liffey: 2022. Ireland, Co Kildare: Kildare County Council. |
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Baars, J. -R. (2022). Survey of the Ephemeroptera and Plecoptera of the Galway’s and Owengarriff River catchments in Killarney National Park. Ireland: NPWS. |
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Professor Mary Kelly-Quinn | |
Kelly-Quinn, M., Bruen, M., Turner, J., O'Sullivan, J., Carlsson, J., Bullock, C., et al. (2022). Assessment of the Extent and Impact of Barriers on Freshwater Hydromorphology and Connectivity in Ireland (Reconnect) (421). Wexford, Ireland: Environmental Protection Agency. |
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Kelly-Quinn, M. (2022). Assessment of the Extent and Impact of Barriers on Freshwater Hydromorphology and Connectivity in Ireland (Reconnect) (421). Ireland: Environmental Protection Agency. |
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Kelly-Quinn, M., Bruen, M., Bullock, C., Christie, M., Feld, C., Kenter, J., et al. (2022). ESDecide: From Ecosystem Services Framework to Application for Integrated Freshwater Resources Management (424). Wexford Ireland: Environmnetal Portection Agency. |
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Dr Marcin Penk | |
Kelly-Quinn, M., Bruen, M., Bullock, C., Christie, M., Feld, C., Kenter, J., et al. (2022). ESDecide: From Ecosystem Services Framework to Application for Integrated Freshwater Resources Management (424). Wexford Ireland: Environmnetal Portection Agency. |