UCD Biology & Environmental Science

School of Biology and Environmental Science - Research Publications 2023/2024

Below is the list of research publications for the School of Biology and Environmental Science in the academic year 2023/2024.



Conference Paper

Dr Margaritha Mysior

Turner, A., Zermeño Pérez, D., Mysior, M., Giraldo-Osorno, P. M., García, B., O'Gorman, E., et al. (2024). Modulation of methicillin-resistant Staphylococcus aureus biofilm formation by PEGylated-PDLLA-coated titanium. In World Biomaterials Congress 2024. Daegu, South Korea.

 
Dr Gavin Stewart

Stewart, G., McKeever, L., & Duffy, K. (2024). Investigation of human UT-B urea transporter regulation in various cell lines. In Proc Physiol Soc Vol. 59 (pp. PCA035). Newcastle-upon-Tyne, UK.

 

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Dataset

Dr Marcin Penk

Penk, M., Kelly, A. -M., Kelly-Quinn, M., & Piggott, J. (2024). Data from: Penk et al (2024) Journal of Ecology. doi:10.6084/m9.figshare.26819107.v1

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Journal article

Dr Jan-Robert Baars

Corcoran, F., Bentov-Lagman, S., Flynn, O., Finegan, M., Vainio-Matilla, L., O'Leary, K., et al. (2023). The attachment of Dreissena rostriformis bugensis on Nitellopsis obtusa in two lakes on the River Shannon, Ireland. Irish Naturalists Journal.

 

Minchin, D., Flynn, O., & Baars, J. -R. (2023). An unexpected vector in the transmission of the Quagga Mussel (Dreissena rostriformis bugensis) (Bivalvia). Irish Naturalists Journal, 40, 2 pages.

 

Flynn, O., O'Leary, K., Bentov-Lagman, S., Minchin, D., & Baars, J. -R. (2024). Hydroacoustic surveys detect and quantify extensive beds of the invasive charophyte Nitellopsis obtusa in Irish lakes. Management of Biological Invasions, 15, 1-14.

 

Flynn, O., O’leary, K., Bentov-Lagman, S., Minchin, D., & Baars, J. R. (2024). Hydroacoustic surveys detect and quantify extensive beds of the invasive charophyte Nitellopsis obtusa in Irish lakes. Management of Biological Invasions, 15(2), 275-288. doi:10.3391/MBI.2024.15.2.07

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Feeley, H. B., Barber-James, H., Kennedy, B., Kenny, A., McGrath, D., Miles, G., et al. (2024). STONEFLY (PLECOPTERA) RECORDS FROM IRELAND IN 2023, WITH ADDITIONAL RECORDS FROM 2009 TO 2022. Bulletin of the Irish Biogeographical Society, 47, 163-184.

 
Dr Kaylee Beine

Beine, K., Connell, L. J., & Greenfield, R. (2024). Variations in the heart rate of Mediterranean mussels Mytilus galloprovincialis and brown mussels Perna perna under thermal stress on rocky shores of South Africa. African Journal of Aquatic Science, 49(2), 166-176. doi:10.2989/16085914.2024.2352381

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Dr Chandra Bellasio

Bellasio, C. (2023). The slope of assimilation rate against stomatal conductance should not be used as a measure of water use efficiency or stomatal control over assimilation. Photosynthesis Research, 158(3), 195-199. doi:10.1007/s11120-023-01054-6

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Bellasio, C., Stuart-Williams, H., Farquhar, G. D., & Flexas, J. (2023). C<inf>4</inf> maize and sorghum are more sensitive to rapid dehydration than C<inf>3</inf> wheat and sunflower. New Phytologist, 240(6), 2239-2252. doi:10.1111/nph.19299

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Bellasio, C., & Lundgren, M. R. (2024). The operation of PEPCK increases light harvesting plasticity in C<inf>4</inf> NAD–ME and NADP–ME photosynthetic subtypes: A theoretical study. Plant Cell and Environment, 47(6), 2288-2309. doi:10.1111/pce.14869

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Professor Thomas Bolger

Potapov, A. M., Guerra, C. A., van den Hoogen, J., Babenko, A., Bellini, B. C., Berg, M. P., et al. (2023). Globally invariant metabolism but density-diversity mismatch in springtails. Nature Communications, 14(1). doi:10.1038/s41467-023-36216-6

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Dr Nicholas Brereton

Mason, C., Tierney, B., Kim, J., Overbey, E., Ryon, K., Foox, J., et al. (2023). Viral activation and ecological restructuring characterize a microbiome axis of spaceflight-associated immune activation. doi:10.21203/rs.3.rs-2493867/v1

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Brière, R., Émond, M., Benhamed, A., Blanchard, P. -G., Drolet, S., Habashi, R., et al. (2023). 2023 Canadian Surgery Forum: Sept. 20-23, 2023.. Canadian journal of surgery. Journal canadien de chirurgie, 66(6 Suppl 1), S54-S136. doi:10.1503/cjs.014223

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Fagoaga, N., Sas, E., Jerbi, A., Brereton, N. J. B., Laplante, R., Labrecque, M., & Pitre, F. E. (2024). Sustainability analysis of primary wastewater treatment by willow plantations in Québec. Environmental Research Communications, 6(3). doi:10.1088/2515-7620/ad1cae

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Kacprzyk, J., Burke, R., Armengot, L., Coppola, M., Tattrie, S. B., Vahldick, H., et al. (2024). Roadmap for the next decade of plant programmed cell death research. New Phytologist, 242(5), 1865-1875. doi:10.1111/nph.19709

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Tierney, B. T., Kim, J. K., Overbey, E. G., Ryon, K. A., Foox, J., Sierra, M. A., et al. (2024). Longitudinal multi-omics analysis of host microbiome architecture and immune responses during short-term spaceflight. Nature Microbiology, 9(7), 1661-1675. doi:10.1038/s41564-024-01635-8

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Dr Paul Brett

Brett, P. T. J., Lawrence, K. E., Govindaraju, K., Kenyon, P., Gedye, K., Tait, A. B., et al. (2024). Using weather data to predict the presence of Lucilia spp. on sheep farms in New Zealand. Veterinary Parasitology: Regional Studies and Reports, 49. doi:10.1016/j.vprsr.2024.101005

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Dr Paul Brooks

Farrugia Drakard, V., Evans, A. J., Crowe, T. P., Moore, P. J., Coughlan, J., & Brooks, P. R. (2024). The influence of environmental context on community composition in artificial rockpools associated with seawalls. Marine Environmental Research, 193. doi:10.1016/j.marenvres.2023.106308

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Jackson-Bué, T., Evans, A. J., Lawrence, P. J., Brooks, P. R., Ward, S. L., Jenkins, S. R., et al. (2024). Habitat structure shapes temperate reef assemblages across regional environmental gradients. Science of the Total Environment, 906. doi:10.1016/j.scitotenv.2023.167494

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Firth, L. B., Bone, J., Bartholomew, A., Bishop, M. J., Bugnot, A., Bulleri, F., et al. (2024). Coastal greening of grey infrastructure: An update on the state of the art. Proceedings of the Institution of Civil Engineers: Maritime Engineering, 177(2), 35-67. doi:10.1680/jmaen.2023.003

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Mayer-Pinto, M., Caley, A., Knights, A. M., Airoldi, L., Bishop, M. J., Brooks, P., et al. (2024). Complexity-functioning relationships differ across different environmental conditions. Journal of Environmental Management, 354. doi:10.1016/j.jenvman.2024.120370

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Dr Paola Campos

Campos, P. E., Pruvost, O., Boyer, K., Chiroleu, F., Cao, T. T., Gaudeul, M., et al. (2023). Herbarium specimen sequencing allows precise dating of Xanthomonas citri pv. citri diversification history. Nature Communications, 14(1). doi:10.1038/s41467-023-39950-z

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Assoc Professor Jens Carlsson

Curnick, D. J., Deaville, R., Bortoluzzi, J. R., Cameron, L., Carlsson, J. E. L., Carlsson, J., et al. (2023). Northerly range expansion and first confirmed records of the smalltooth sand tiger shark, Odontaspis ferox, in the United Kingdom and Ireland. Journal of Fish Biology, 103(6), 1549-1555. doi:10.1111/jfb.15529

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Dr Tancredi Caruso

Rillig, M. C., Lehmann, A., Lanfranco, L., Caruso, T., & Johnson, D. (2024). Clarifying the definition of common mycorrhizal networks. Functional Ecology. doi:10.1111/1365-2435.14545

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Lastovetsky, O. A., Caruso, T., Brennan, F. P., Wall, D., Pylni, S., & Doyle, E. (2024). Spores of arbuscular mycorrhizal fungi host surprisingly diverse communities of endobacteria. New Phytologist, 242(4), 1785-1797. doi:10.1111/nph.19605

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Lu, J. Z., Bluhm, C., Foltran, E., Alicia Rivera Pérez, C., Ammer, C., Caruso, T., et al. (2024). Functional traits in soil-living oribatid mites unveil trophic reorganization in belowground communities by introduced tree species. Geoderma, 448. doi:10.1016/j.geoderma.2024.116947

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Dr Simone Ciuti

Hart, E. E., Haigh, A., & Ciuti, S. (2023). A scoping review of the scientific evidence base for rewilding in Europe. Biological Conservation, 285. doi:10.1016/j.biocon.2023.110243

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Murphy, K. J., Ciuti, S., Burkitt, T., & Morera-Pujol, V. (2023). Bayesian areal disaggregation regression to predict wildlife distribution and relative density with low-resolution data. Ecological Applications, 33(8). doi:10.1002/eap.2924

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Brock, C., Morera-Pujol, V., Murphy, K. J., Nieuwenhuis, M., & Ciuti, S. (2023). Predicting forest damage using relative abundance of multiple deer species and national forest inventory data. Forest Ecology and Management, 550. doi:10.1016/j.foreco.2023.121506

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Keenan, S., Niedziela, D., Morera-Pujol, V., Franklin, D., Murphy, K. J., Ciuti, S., & McMahon, B. J. (2024). Zoonotic disease classification in wildlife: a theoretical framework for researchers. Mammal Review, 54(1), 63-77. doi:10.1111/mam.12329

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Byrne, A. W., Allen, A., Ciuti, S., Gormley, E., Kelly, D. J., Marks, N. J., et al. (2024). Badger Ecology, Bovine Tuberculosis, and Population Management: Lessons from the Island of Ireland. Transboundary and Emerging Diseases, 2024. doi:10.1155/2024/8875146

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Amin, B., Fishman, R., Quinn, M., Matas, D., Palme, R., Koren, L., & Ciuti, S. (2024). Sex differences in the relationship between maternal and foetal glucocorticoids in a free-ranging large mammal. Peer Community Journal, 4. doi:10.24072/pcjournal.431

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Faull, J., Conteddu, K., Griffin, L. L., Amin, B., Smith, A. F., Haigh, A., & Ciuti, S. (2024). Do human-wildlife interactions predict offspring hiding strategies in peri-urban fallow deer?. Royal Society Open Science, 11(3). doi:10.1098/rsos.231470

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Conteddu, K., English, H. M., Byrne, A. W., Amin, B., Griffin, L. L., Kaur, P., et al. (2024). A scoping review on bovine tuberculosis highlights the need for novel data streams and analytical approaches to curb zoonotic diseases. Veterinary research, 55(1), 64. doi:10.1186/s13567-024-01314-w

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Luca Bastianelli, M., von Hoermann, C., Kirchner, K., Signer, J., Dupke, C., Henrich, M., et al. (2024). Risk response towards roads is consistent across multiple species in a temperate forest ecosystem. Oikos, 2024(7). doi:10.1111/oik.10433

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Purves, K., Brown, H., Haverty, R., Ryan, A., Griffin, L. L., McCormack, J., et al. (2024). SARS-CoV-2 Seropositivity in Urban Population of Wild Fallow Deer, Dublin, Ireland, 2020–2022. Emerging Infectious Diseases, 30(8), 1610-1620. doi:10.3201/eid3008.231056

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Ms Adele Connor

Connor, A. E., Hughes, C., Schäfer, L., McNally, L., Raw, D. O., Bahramian, K., et al. (2023). Involving patients in healthcare research is well documented but can it work in lab-based research?. Research Involvement and Engagement, 9(1). doi:10.1186/s40900-023-00500-y

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Ms Kimberly Conteddu

Conteddu, K., English, H. M., Byrne, A. W., Amin, B., Griffin, L. L., Kaur, P., et al. (2024). A scoping review on bovine tuberculosis highlights the need for novel data streams and analytical approaches to curb zoonotic diseases. Veterinary research, 55(1), 64. doi:10.1186/s13567-024-01314-w

- Available Online
 
Dr Grace Cott

Maxwell, T. L., Rovai, A. S., Adame, M. F., Adams, J. B., Álvarez-Rogel, J., Austin, W. E. N., et al. (2023). Global dataset of soil organic carbon in tidal marshes. Scientific Data, 10(1). doi:10.1038/s41597-023-02633-x

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Fuchs, A., Davidson, I. C., Megonigal, J. P., Devaney, J. L., Simkanin, C., Noyce, G. L., et al. (2024). Stronger increase of methane emissions from coastal wetlands by non-native Spartina alterniflora than non-native Phragmites australis. Plants People Planet. doi:10.1002/ppp3.10578

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Ms Jennifer Coughlan

Farrugia Drakard, V., Evans, A. J., Crowe, T. P., Moore, P. J., Coughlan, J., & Brooks, P. R. (2024). The influence of environmental context on community composition in artificial rockpools associated with seawalls. Marine Environmental Research, 193. doi:10.1016/j.marenvres.2023.106308

- Available Online
 
Mr Eoghan Curran

Curran, E., Burke, J. I., & Feechan, A. (2023). Mixed infections of Zymoseptoria tritici lead to reduced Septoria tritici blotch disease symptoms. Plant Pathology, 72(7), 1202-1217. doi:10.1111/ppa.13756

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Professor Fiona Doohan

Malla, K. B., Thapa, G., & Doohan, F. M. (2024). Erratum: Correction: Mitochondrial phosphate transporter and methyltransferase genes contribute to Fusarium head blight Type II disease resistance and grain development in wheat (PloS one (2021) 16 10 DOI: 10.1371/journal.pone.0258726). PloS one, 19(7), e0308276. doi:10.1371/journal.pone.0308276

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Perochon, A., & Doohan, F. M. (2024). Trichothecenes and Fumonisins: Key Players in Fusarium–Cereal Ecosystem Interactions. Toxins, 16(2). doi:10.3390/toxins16020090

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Inglis, A., Parnell, A. C., Subramani, N., & Doohan, F. M. (2024). Machine Learning Applied to the Detection of Mycotoxin in Food: A Systematic Review. Toxins, 16(6). doi:10.3390/toxins16060268

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Heckmann, A., Perochon, A., & Doohan, F. M. (2024). Genome-wide analysis of salicylic acid and jasmonic acid signalling marker gene families in wheat. Plant Biology, 26(5), 691-704. doi:10.1111/plb.13659

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Professor Evelyn Doyle

Lastovetsky, O. A., Caruso, T., Brennan, F. P., Wall, D., Pylni, S., & Doyle, E. (2024). Spores of arbuscular mycorrhizal fungi host surprisingly diverse communities of endobacteria. New Phytologist, 242(4), 1785-1797. doi:10.1111/nph.19605

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Dr Julian Fennessy

Bernstein-Kurtycz, L. M., Dunham, N. T., Evenhuis, J., Brown, M. B., Muneza, A. B., Fennessy, J., et al. (2023). Evaluating the effects of giraffe skin disease and wire snare wounds on the gaits of free-ranging Nubian giraffe. Scientific Reports, 13(1). doi:10.1038/s41598-023-28677-y

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Coimbra, R. T. F., Winter, S., Muneza, A., Fennessy, S., Otiende, M., Mijele, D., et al. (2023). Genomic analysis reveals limited hybridization among three giraffe species in Kenya. BMC Biology, 21(1). doi:10.1186/s12915-023-01722-y

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Gašparová, K., Blanco, J., Glikman, J. A., Fennessy, J., Moussa Zabeirou, A. R., Abdou Mahamadou, A. R., et al. (2023). Social development and biodiversity conservation synergies for the West African giraffe in a human-wildlife landscape. Environmental Conservation, 50(4), 259-266. doi:10.1017/S0376892923000243

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Burger-Schulz, A. L., Thiel, E., Fennessy, J., Fennessy, S., & Dierkes, P. W. (2023). Accelerometry reveals nocturnal biphasic sleep behavior in wild giraffe. Frontiers in Mammal Science, 2. doi:10.3389/fmamm.2023.1243883

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Ferguson, S., Harvey, R. J., Fennessy, S., & Fennessy, J. (2024). Immobilisation protocols for wild giraffe (Giraffa spp.) – a review. Journal of the South African Veterinary Association, 95(1), 74-79. doi:10.36303/JSAVA.634

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Muneza, A. B., Kavutha, J. S., Muruana, M. W., Ikime, T., Kariuki, L., Lekolool, I., et al. (2024). Updated review of the conservation status of Nubian giraffe (Giraffa camelopardalis camelopardalis) in Kenya. Biodiversity and Conservation, 33(4), 1269-1284. doi:10.1007/s10531-024-02824-x

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Gašparová, K., Fennessy, J., Moussa Zabeirou, A. R., Abagana, A. L., Rabeil, T., & Brandlová, K. (2024). Saving the Last West African Giraffe Population: A Review of Its Conservation Status and Management. Animals, 14(5). doi:10.3390/ani14050702

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Crego, R. D., Fennessy, J., Brown, M. B., Connette, G., Stacy-Dawes, J., Masiaine, S., & Stabach, J. A. (2024). Combining species distribution models and moderate resolution satellite information to guide conservation programs for reticulated giraffe. Animal Conservation, 27(2), 160-170. doi:10.1111/acv.12894

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Marneweck, C. J., Brown, M. B., Fennessy, S., Ferguson, S., Hoffman, R., Muneza, A. B., & Fennessy, J. (2024). The Evolution of Tracking Technology for Wild Giraffe (Giraffa spp.). African Journal of Wildlife Research, 54(1). doi:10.3957/056.054.0046

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Dr Courtney Gorman

Gorman, C. E., McClean, D., & Donohue, I. (2024). Water-level fluctuations and nutrient enrichment interact to alter ecosystem structure in distinct ways at different water depths. Freshwater Biology, 69(3), 416-424. doi:10.1111/fwb.14220

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Gorman, C. E., Martini, F., Conroy, K., King, E., Mcleod, R., Obst, C., et al. (2024). A decision methodology for site-level ecosystem accounting. Journal of Environmental Management, 366. doi:10.1016/j.jenvman.2024.121814

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Dr Grace Hoysted

Williams, A., Sinanaj, B., & Hoysted, G. A. (2024). Plant–microbe interactions through a lens: tales from the mycorrhizosphere. Annals of Botany, 133(3), 399-412. doi:10.1093/aob/mcad191

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Dr Zixia Huang

Huang, Z., Jiang, C., Gu, J., Uvizl, M., Power, S., Douglas, D., & Kacprzyk, J. (2023). Duplications of Human Longevity-Associated Genes Across Placental Mammals. Genome Biology and Evolution, 15(10). doi:10.1093/gbe/evad186

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Uvizl, M., Puechmaille, S. J., Power, S., Pippel, M., Carthy, S., Haerty, W., et al. (2024). Comparative Genome Microsynteny Illuminates the Fast Evolution of Nuclear Mitochondrial Segments (NUMTs) in Mammals. Molecular Biology and Evolution, 41(1). doi:10.1093/molbev/msad278

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Hong, M., & Huang, Z. (2024). Profiling Circular RNA Expression Across 11 Tissues in the Marine Gastropod <i>Rapana venosa</i>. Aquaculture Research, 2024(1). doi:10.1155/2024/4118218

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Zeng, Z., Ni, J., Huang, Z., & Tan, Q. (2024). Expression and functional analysis of Fushi Tarazu transcription factor 1 (FTZ-F1) in the regulation of steroid hormones during the gonad development of Fujian Oyster, Crassostrea angulata.. Comparative biochemistry and physiology. Part A, Molecular & integrative physiology, 295, 111668. doi:10.1016/j.cbpa.2024.111668

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Dr Graham Hughes

Bredemeyer, K. R., Hillier, L. D., Harris, A. J., Hughes, G. M., Foley, N. M., Lawless, C., et al. (2023). Single-haplotype comparative genomics provides insights into lineage-specific structural variation during cat evolution. Nature Genetics, 55(11), 1953-1963. doi:10.1038/s41588-023-01548-y

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Ryan, L., Lawless, C., & Hughes, G. M. (2024). Sensommatic: an efficient pipeline to mine and predict sensory receptor genes in the era of reference-quality genomes. Bioinformatics, 40(1). doi:10.1093/bioinformatics/btae040

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Waterhouse, R. M., Adam-Blondon, A. F., Balech, B., Barta, E., Ying Shi Chua, P., Di Cola, V., et al. (2024). The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity. F1000Research, 12. doi:10.12688/f1000research.133724.2

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Ruhsam, M., Hollingsworth, P. M., Mc Cartney, A. M., Herron, K. E., Hughes, G. M., Christenhusz, M. J. M., et al. (2024). The genome sequence of lesser trefoil or Irish shamrock, Trifolium dubium Sibth. (Fabaceae). Wellcome Open Research, 9. doi:10.12688/wellcomeopenres.21191.1

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Dr Darrin Hulsey

Ehemann, N. R., Meyer, A., & Hulsey, C. D. (2024). Morphological description of spontaneous pelvic fin loss in a neotropical cichlid fish. Journal of Morphology, 285(1). doi:10.1002/jmor.21663

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Dr Rory Johnson

Amaral, P., Carbonell-Sala, S., De La Vega, F. M., Faial, T., Frankish, A., Gingeras, T., et al. (2023). The status of the human gene catalogue.. Nature, 622(7981), 41-47. doi:10.1038/s41586-023-06490-x

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Esposito, R., Lanzós, A., Uroda, T., Ramnarayanan, S., Büchi, I., Polidori, T., et al. (2023). Author Correction: Tumour mutations in long noncoding RNAs enhance cell fitness (Nature Communications, (2023), 14, 1, (3342), 10.1038/s41467-023-39160-7). Nature Communications, 14(1). doi:10.1038/s41467-023-41288-5

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Esposito, R., Lanzós, A., Uroda, T., Ramnarayanan, S., Büchi, I., Polidori, T., et al. (2023). Tumour mutations in long noncoding RNAs enhance cell fitness. Nature Communications, 14(1). doi:10.1038/s41467-023-39160-7

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Dhaka, B., Zimmerli, M., Hanhart, D., Moser, M. B., Guillen-Ramirez, H., Mishra, S., et al. (2024). Functional identification of cis-regulatory long noncoding RNAs at controlled false discovery rates. Nucleic Acids Research, 52(6), 2821-2835. doi:10.1093/nar/gkae075

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Coan, M., Haefliger, S., Ounzain, S., & Johnson, R. (2024). Targeting and engineering long non-coding RNAs for cancer therapy. Nature Reviews Genetics, 25(8), 578-595. doi:10.1038/s41576-024-00693-2

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Dr Julia Jones

Franchini, P., Fruciano, C., Wood, T. J., Shastry, V., Goulson, D., Hughes, W. O. H., & Jones, J. C. (2023). Limited introgression from non-native commercial strains and signatures of adaptation in the key pollinator Bombus terrestris. Molecular Ecology, 32(21), 5709-5723. doi:10.1111/mec.17151

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O'Connell, D. P., Baker, B. M., Atauri, D., & Jones, J. C. (2024). Increasing temperature and time in glasshouses increases honey bee activity and affects internal brood conditions. Journal of Insect Physiology, 155. doi:10.1016/j.jinsphys.2024.104635

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Dr Joanna Kacprzyk

Burke, R., McCabe, A., Sonawane, N. R., Rathod, M. H., Whelan, C. V., McCabe, P. F., & Kacprzyk, J. (2023). Arabidopsis cell suspension culture and RNA sequencing reveal regulatory networks underlying plant-programmed cell death. Plant Journal, 115(6), 1465-1485. doi:10.1111/tpj.16407

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Huang, Z., Jiang, C., Gu, J., Uvizl, M., Power, S., Douglas, D., & Kacprzyk, J. (2023). Duplications of Human Longevity-Associated Genes Across Placental Mammals. Genome Biology and Evolution, 15(10). doi:10.1093/gbe/evad186

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McGinn, A., Donlon, L., & Kacprzyk, J. (2024). Plant memories: Art co-created with the public as a tool for investigating how people build lasting connections with plants. Plants People Planet. doi:10.1002/ppp3.10555

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Kacprzyk, J., Burke, R., Armengot, L., Coppola, M., Tattrie, S. B., Vahldick, H., et al. (2024). Roadmap for the next decade of plant programmed cell death research. New Phytologist, 242(5), 1865-1875. doi:10.1111/nph.19709

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Quille, P., Kacprzyk, J., O’Connell, S., & Ng, C. K. Y. (2024). The role of an Ascophyllum nodosum extract in lowering the environmental impact and improving nitrogen use efficiency in pasture systems under a reduced nitrogen regime. Journal of Applied Phycology, 36(3), 1533-1544. doi:10.1007/s10811-024-03182-5

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Burke, R., Nicotra, D., Phelan, J., Downey, F., McCabe, P. F., & Kacprzyk, J. (2024). Spermine and spermidine inhibit or induce programmed cell death in Arabidopsis thaliana in vitro and in vivo in a dose-dependent manner. FEBS Journal, 291(16), 3665-3685. doi:10.1111/febs.17165

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Dr Adam Kane

Kendall, C. J., Bracebridge, C., Lynch, E. C., Mgumba, M., Monadjem, A., Nicholas, A., & Kane, A. (2023). Value of combining transect counts and telemetry data to determine short-term population trends in a globally threatened species. Conservation Biology, 37(6). doi:10.1111/cobi.14146

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Clark, B. L., Carneiro, A. P. B., Pearmain, E. J., Rouyer, M. M., Clay, T. A., Cowger, W., et al. (2023). Global assessment of marine plastic exposure risk for oceanic birds. Nature Communications, 14(1). doi:10.1038/s41467-023-38900-z

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Donohue, J. G., Piiroinen, P. T., & Kane, A. (2024). Predicted short-term mesoscavenger release gives way to apex-scavenger dominance. Journal of Animal Ecology. doi:10.1111/1365-2656.14180

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Monadjem, A., Farooq, H., & Kane, A. (2024). Elevation filters bat, rodent and shrew communities differently by morphological traits. Diversity and Distributions, 30(3). doi:10.1111/ddi.13801

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Reed, T. E., Kane, A., McGinnity, P., & O'Sullivan, R. J. (2024). Competitive interactions affect introgression and population viability amidst maladaptive hybridization. Evolutionary Applications, 17(7). doi:10.1111/eva.13746

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Professor Mary Kelly-Quinn

Kelly-Quinn, M., Biggs, J. N., Brooks, S., Fortuño, P., Hegarty, S., Jones, J. I., & Regan, F. (2023). Opportunities, approaches and challenges to the engagement of citizens in filling small water body data gaps. Hydrobiologia, 850(15), 3419-3439. doi:10.1007/s10750-022-04973-y

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Kelly-Quinn, M., Biggs, J., Jones, J. I., & Riley, W. D. (2023). Preface: Small water bodies in the landscape. Hydrobiologia, 850(15), 3209-3210. doi:10.1007/s10750-023-05236-0

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Antunes, P. O., ÓhUallacháin, D., Dunne, N., Kelly-Quinn, M., O’Sullivan, M., Bragina, L., & Jennings, E. (2023). Cattle access to small streams increases concentrations of Escherichia coli in bed sediments. Hydrobiologia, 850(15), 3273-3291. doi:10.1007/s10750-022-05091-5

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Hogan, S. C., O’Sullivan, J. J., Bruen, M., Jarvie, H. P., Cox, E. J., Bowes, M. J., & Kelly-Quinn, M. (2023). A review of the nature and source of nutrient impairment in small streams: a desk based characterisation for targeted mitigation measures. Hydrobiologia, 850(15), 3293-3311. doi:10.1007/s10750-022-05114-1

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Cox, E. J., Gurnell, A. M., Bowes, M. J., Bruen, M., Hogan, S. C., O’Sullivan, J. J., & Kelly-Quinn, M. (2023). A multi-scale analysis and classification of the hydrogeomorphological characteristics of Irish headwater streams. Hydrobiologia, 850(15), 3391-3418. doi:10.1007/s10750-022-05013-5

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Pschenyckyj, C., Donahue, T., Kelly-Quinn, M., O’Driscoll, C., & Renou-Wilson, F. (2023). An examination of the influence of drained peatlands on regional stream water chemistry. Hydrobiologia, 850(15), 3313-3339. doi:10.1007/s10750-023-05188-5

- Available Online
 

ONeill, M., Briciu-Burghina, C., Jennings, E., Antunes, P., Huallacháin, D., Kelly-Quinn, M., et al. (2023). Influence of a cattle access point on temporal changes in stream turbidity. Irish Journal of Agricultural and Food Research, 62(1), 7-17. doi:10.15212/ijafr-2022-0109

- Available Online
 

O'Sullivan, M., Ó hUallacháin, D., Antunes, P. O., Jennings, E., Linnane, S., Wynne, C., & Kelly-Quinn, M. (2024). Mitigation of impacts of cattle access on stream ecosystems: Efficacy of fencing. River Research and Applications, 40(1), 77-91. doi:10.1002/rra.4218

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Tantu, S. T., Yilma, S. M., & Mary, K. -Q. (2024). Water quality characterization of Lake Abaya, a water body under increasing anthropogenic pressure in Southern Ethiopia. Sustainable Water Resources Management, 10(4). doi:10.1007/s40899-024-01119-x

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Dr Mortaza Khodaeiaminjan

Bernád, V., Al-Tamimi, N., Langan, P., Gillespie, G., Dempsey, T., Henchy, J., et al. (2024). Unlocking the genetic diversity and population structure of the newly introduced two-row spring European HerItage Barley collecTion (ExHIBiT). Frontiers in Plant Science, 15. doi:10.3389/fpls.2024.1268847

- Available Online
 

Khodaeiaminjan, M., Gomes, C., Pagano, A., Kruszka, D., Sulima, P., Przyborowski, J. A., et al. (2024). Impacts of in-vitro zebularine treatment on genome-wide DNA methylation and transcriptomic profiles in Salix purpurea L.. Physiologia Plantarum, 176(3). doi:10.1111/ppl.14403

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Dr Olga Lastovetsky

Lastovetsky, O. A., Caruso, T., Brennan, F. P., Wall, D., Pylni, S., & Doyle, E. (2024). Spores of arbuscular mycorrhizal fungi host surprisingly diverse communities of endobacteria. New Phytologist, 242(4), 1785-1797. doi:10.1111/nph.19605

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Dr Guerrino Macori

The next-generation tools for risk assessment and precision food safety in the One Health continuum (2023). European journal of public health, 33(Suppl 2).

 

Macori, G., & Fanning, S. (2023). The next-generation tools for risk assessment and precision food safety in the One Health continuum. European Journal of Public Health, 33(Supplement_2). doi:10.1093/eurpub/ckad160.1032

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Mousavi, Z. E., Koolman, L., Macori, G., Fanning, S., & Butler, F. (2023). Comprehensive Genomic Characterization of Cronobacter sakazakii Isolates from Infant Formula Processing Facilities Using Whole-Genome Sequencing. Microorganisms, 11(11). doi:10.3390/microorganisms11112749

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Pakhomov, N. V., Kostyunina, D. S., Macori, G., Dillon, E., Brady, T., Sundaramoorthy, G., et al. (2023). High-Soluble-Fiber Diet Attenuates Hypoxia-Induced Vascular Remodeling and the Development of Hypoxic Pulmonary Hypertension. Hypertension, 80(11), 2372-2385. doi:10.1161/HYPERTENSIONAHA.123.20914

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Russell, T., Macori, G., Russell, L., Mulcahy, G., Sammin, D., Fanning, S., & Barry, G. (2023). Persistence and recovery of SARS-CoV-2 from abiotic and biotic surfaces found in meat processing plants. Journal of Food Safety, 43(6). doi:10.1111/jfs.13086

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Marmion, M., Macori, G., Whyte, P., & Scannell, A. G. M. (2023). Poultry Abattoir Site Microbiome Analysis Reveals a Core, Time-Independent Processor Microbiota. ACS Food Science and Technology, 3(12), 2045-2064. doi:10.1021/acsfoodscitech.3c00238

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Macori, G., Al-Qahtani, A. A., Koolman, L., Althawadi, S., Mutabaqani, M., Bashtawi, R., et al. (2024). Stenotrophomonas riyadhensis sp. nov., isolated from a hospital floor swab. International Journal of Systematic and Evolutionary Microbiology, 74(2). doi:10.1099/ijsem.0.006250

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Hu, Y., Wang, W., Nguyen, S. V., Macori, G., Li, F., & Fanning, S. (2024). Editorial: High-level antimicrobial resistance or hypervirulence in emerging and re-emerging “super-bug” foodborne pathogens: detection, mechanism, and dissemination from omics insights. Frontiers in Microbiology, 15. doi:10.3389/fmicb.2024.1459601

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Almaghrabi, R. S., Macori, G., Sheridan, F., McCarthy, S. C., Floss-Jones, A., Fanning, S., et al. (2024). Whole genome sequencing of resistance and virulence genes in multi-drug resistant Pseudomonas aeruginosa. Journal of Infection and Public Health, 17(2), 299-307. doi:10.1016/j.jiph.2023.12.012

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Denuga, S., Duleba, D., Dutta, P., Macori, G., Corrigan, D. K., Fanning, S., & Johnson, R. P. (2024). Aptamer-functionalized nanopipettes: a promising approach for viral fragment detection via ion current rectification. Sensors and Diagnostics, 3(6), 1068-1075. doi:10.1039/d4sd00097h

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Dr Simone Marcone

Lynch, S. M., Heeran, A. B., Burke, C., Lynam-Lennon, N., Eustace, A. J., Dean, K., et al. (2024). Precision Oncology, Artificial Intelligence, and Novel Therapeutic Advancements in the Diagnosis, Prevention, and Treatment of Cancer: Highlights from the 59th Irish Association for Cancer Research (IACR) Annual Conference. Cancers, 16(11). doi:10.3390/cancers16111989

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Millar, B., Marcone, S., Barry, M., Godson, C., & De Gaetano, M. (2024). Characterization of the human macrophage spectrum: A novel approach to identify novel drug targets and biomarkers in atherosclerosis. Atherosclerosis, 395, 117668. doi:10.1016/j.atherosclerosis.2024.117668

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Professor Paul McCabe

Burke, R., McCabe, A., Sonawane, N. R., Rathod, M. H., Whelan, C. V., McCabe, P. F., & Kacprzyk, J. (2023). Arabidopsis cell suspension culture and RNA sequencing reveal regulatory networks underlying plant-programmed cell death. Plant Journal, 115(6), 1465-1485. doi:10.1111/tpj.16407

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Kacprzyk, J., Burke, R., Armengot, L., Coppola, M., Tattrie, S. B., Vahldick, H., et al. (2024). Roadmap for the next decade of plant programmed cell death research. New Phytologist, 242(5), 1865-1875. doi:10.1111/nph.19709

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Dowling, C. A., Shi, J., Toth, J. A., Quade, M. A., Smart, L. B., McCabe, P. F., et al. (2024). A FLOWERING LOCUS T ortholog is associated with photoperiod-insensitive flowering in hemp (Cannabis sativa L.). Plant Journal, 119(1), 383-403. doi:10.1111/tpj.16769

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Burke, R., Nicotra, D., Phelan, J., Downey, F., McCabe, P. F., & Kacprzyk, J. (2024). Spermine and spermidine inhibit or induce programmed cell death in Arabidopsis thaliana in vitro and in vivo in a dose-dependent manner. FEBS Journal, 291(16), 3665-3685. doi:10.1111/febs.17165

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Dr Rainer Melzer

Dowling, C. A., Shi, J., Toth, J. A., Quade, M. A., Smart, L. B., McCabe, P. F., et al. (2024). A FLOWERING LOCUS T ortholog is associated with photoperiod-insensitive flowering in hemp (Cannabis sativa L.). Plant Journal, 119(1), 383-403. doi:10.1111/tpj.16769

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Dr Virginia Morera-Pujol

Murphy, K. J., Ciuti, S., Burkitt, T., & Morera-Pujol, V. (2023). Bayesian areal disaggregation regression to predict wildlife distribution and relative density with low-resolution data. Ecological Applications, 33(8). doi:10.1002/eap.2924

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Brock, C., Morera-Pujol, V., Murphy, K. J., Nieuwenhuis, M., & Ciuti, S. (2023). Predicting forest damage using relative abundance of multiple deer species and national forest inventory data. Forest Ecology and Management, 550. doi:10.1016/j.foreco.2023.121506

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Keenan, S., Niedziela, D., Morera-Pujol, V., Franklin, D., Murphy, K. J., Ciuti, S., & McMahon, B. J. (2024). Zoonotic disease classification in wildlife: a theoretical framework for researchers. Mammal Review, 54(1), 63-77. doi:10.1111/mam.12329

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Conteddu, K., English, H. M., Byrne, A. W., Amin, B., Griffin, L. L., Kaur, P., et al. (2024). A scoping review on bovine tuberculosis highlights the need for novel data streams and analytical approaches to curb zoonotic diseases. Veterinary research, 55(1), 64. doi:10.1186/s13567-024-01314-w

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Dr Margaritha Mysior

Agoni, C., Stavropoulos, I., Kirwan, A., Mysior, M. M., Holton, T., Kranjc, T., et al. (2023). Cell-Penetrating Milk-Derived Peptides with a Non-Inflammatory Profile. Molecules, 28(19). doi:10.3390/molecules28196999

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Biduski, B., Maçãs, M., Vahedikia, N., O'Connor, P. M., Hussey, K., Simpson, J. C., et al. (2024). Dough rheology and internal structure of bread produced with wheat flour partially substituted by buckwheat flour: A step towards enhancing nutritional value. Food Structure, 39. doi:10.1016/j.foostr.2023.100364

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Dr Sonia Negrao

Bernád, V., Clarke, J. L., & Negrão, S. (2024). Editorial: Women in plant science - linking genome to phenome. Frontiers in Plant Science, 15. doi:10.3389/fpls.2024.1454686

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Bernád, V., Al-Tamimi, N., Langan, P., Gillespie, G., Dempsey, T., Henchy, J., et al. (2024). Unlocking the genetic diversity and population structure of the newly introduced two-row spring European HerItage Barley collecTion (ExHIBiT). Frontiers in Plant Science, 15. doi:10.3389/fpls.2024.1268847

- Available Online

Walsh, J. J., Mangina, E., & Negrão, S. (2024). Advancements in Imaging Sensors and AI for Plant Stress Detection: A Systematic Literature Review. Plant Phenomics, 6. doi:10.34133/plantphenomics.0153

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Assoc Professor Carl Ng

Álvarez, C., Jimenez-Ríos, L., Iniesta-Pallares, M., Jurado-Flores, A., Molina-Heredia, F. P., Ng, C. K. Y., & Mariscal, V. (2023). Symbiosis between cyanobacteria and plants: from molecular studies to agronomic applications. Journal of Experimental Botany, 74(19), 6145-6157. doi:10.1093/jxb/erad261

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Barth, S., Ng, C. K. Y., Moloney-Finn, L., Humphreys, J., & Alves, S. (2024). Differential biomass and nutrient accumulation in perennial ryegrass accessions under excess water treatment in field conditions during winter. Biologia Plantarum, 68, 60-69. doi:10.32615/bp.2024.004

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Quille, P., Kacprzyk, J., O’Connell, S., & Ng, C. K. Y. (2024). The role of an Ascophyllum nodosum extract in lowering the environmental impact and improving nitrogen use efficiency in pasture systems under a reduced nitrogen regime. Journal of Applied Phycology, 36(3), 1533-1544. doi:10.1007/s10811-024-03182-5

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Dr Darren O'Connell

Djamaluddin, R., Fusi, M., Djabar, B., Evans, D., Holmes, R., Huxham, M., et al. (2023). Point of (no) return? Vegetation structure and diversity of restored mangroves in Sulawesi, Indonesia, 14–16 years on. Restoration Ecology, 31(7). doi:10.1111/rec.13963

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Csergo, A. M., Healy, K., O'Connell, D. P., Baudraz, M. E. A., Kelly, D. J., Ó Marcaigh, F., et al. (2024). Spatial phenotypic variability is higher between island populations than between mainland populations worldwide. Ecography, 2024(1). doi:10.1111/ecog.06787

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O'Connell, D. P., Baker, B. M., Atauri, D., & Jones, J. C. (2024). Increasing temperature and time in glasshouses increases honey bee activity and affects internal brood conditions. Journal of Insect Physiology, 155. doi:10.1016/j.jinsphys.2024.104635

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Dr Marcin Penk

Orr, J. A., Macaulay, S. J., Mordente, A., Burgess, B., Albini, D., Hunn, J. G., et al. (2024). Studying interactions among anthropogenic stressors in freshwater ecosystems: A systematic review of 2396 multiple-stressor experiments. Ecology Letters, 27(6). doi:10.1111/ele.14463

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Assoc Professor Antoinette Perry

O’Reilly, E., Khalifa, K., Cosgrave, J., Azam, H., Prencipe, M., Simpson, J. C., et al. (2023). Cannabidiol Inhibits the Proliferation and Invasiveness of Prostate Cancer Cells. Journal of Natural Products, 86(9), 2151-2161. doi:10.1021/acs.jnatprod.3c00363

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Connor, A. E., Hughes, C., Schäfer, L., McNally, L., Raw, D. O., Bahramian, K., et al. (2023). Involving patients in healthcare research is well documented but can it work in lab-based research?. Research Involvement and Engagement, 9(1). doi:10.1186/s40900-023-00500-y

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Tuzova, A. V., Moran, B., Russell, N. M., Das, S., Delahaye, F., Silva, R., et al. (2024). Deciphering epigenetic regulation of enhancers in high-risk prostate cancer. Genes Chromosomes and Cancer, 63(2). doi:10.1002/gcc.23218

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Connor, A. E., Lysaght, J., Brennan, D. J., Simpson, J. C., & Perry, A. S. (2024). Abstract A069: High-resolution volumetric imaging of primary and metastatic high-grade serous ovarian cancer explants. Cancer Research, 84(5_Supplement_2), A069. doi:10.1158/1538-7445.ovarian23-a069

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Walsh, M., Jordan, A., Schäfer, L., Joha, J., Heapes, B., Noonan, M., et al. (2024). IMPROVER (Involving Men with Prostate Cancer in Engaged Research): Assessing Patient Experience With Testing, Diagnosis, And Surveillance. Clinical Genitourinary Cancer, 22(3). doi:10.1016/j.clgc.2024.102063

- Available Online
Dr Megan Power

Power, M. L., Ransome, R. D., Riquier, S., Romaine, L., Jones, G., & Teeling, E. C. (2023). Hibernation telomere dynamics in a shifting climate: Insights from wild greater horseshoe bats. Proceedings of the Royal Society B: Biological Sciences, 290(2008). doi:10.1098/rspb.2023.1589

- Available Online

Kosch, T. A., Crawford, A. J., Lockridge Mueller, R., Wollenberg Valero, K. C., Power, M. L., Rodríguez, A., et al. (2024). Comparative analysis of amphibian genomes: An emerging resource for basic and applied research. Molecular Ecology Resources. doi:10.1111/1755-0998.14025

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Dr Florence Renou-Wilson

Pschenyckyj, C., Donahue, T., Kelly-Quinn, M., O’Driscoll, C., & Renou-Wilson, F. (2023). An examination of the influence of drained peatlands on regional stream water chemistry. Hydrobiologia, 850(15), 3313-3339. doi:10.1007/s10750-023-05188-5

- Available Online

Jurasinski, G., Barthelmes, A., Byrne, K. A., Chojnicki, B. H., Christiansen, J. R., Decleer, K., et al. (2024). Active afforestation of drained peatlands is not a viable option under the EU Nature Restoration Law. Ambio, 53(7), 970-983. doi:10.1007/s13280-024-02016-5

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Palviainen, M., Pumpanen, J., Mosquera, V., Hasselquist, E. M., Laudon, H., Ostonen, I., et al. (2024). Extending the SUSI peatland simulator to include dissolved organic carbon formation, transport and biodegradation - Proper water management reduces lateral carbon fluxes and improves carbon balance.. The Science of the total environment, 950, 175173. doi:10.1016/j.scitotenv.2024.175173

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Dr Susanne Schilling

Dowling, C. A., Shi, J., Toth, J. A., Quade, M. A., Smart, L. B., McCabe, P. F., et al. (2024). A FLOWERING LOCUS T ortholog is associated with photoperiod-insensitive flowering in hemp (Cannabis sativa L.). Plant Journal, 119(1), 383-403. doi:10.1111/tpj.16769

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Dr Gavin Stewart

Alexander, S. P. H., Fabbro, D., Kelly, E., Mathie, A. A., Peters, J. A., Veale, E. L., et al. (2023). The Concise Guide to PHARMACOLOGY 2023/24: Transporters. British Journal of Pharmacology, 180(S2), S374-S469. doi:10.1111/bph.16182

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Pinki, F., Costello, D. A., & Stewart, G. (2023). Regional investigation of UT-B urea transporters in the rat brain. Biochemistry and Biophysics Reports, 36. doi:10.1016/j.bbrep.2023.101563

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Mr Natarajan Subramani

Natarajan, S., Balachandar, D., & Paranidharan, V. (2023). Inhibitory effects of epiphytic Kluyveromyces marxianus from Indian senna (Cassia angustifolia Vahl.) on growth and aflatoxin production of Aspergillus flavus. International Journal of Food Microbiology, 406. doi:10.1016/j.ijfoodmicro.2023.110368

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Professor Emma Teeling

Lu, A. T., Fei, Z., Haghani, A., Robeck, T. R., Zoller, J. A., Li, C. Z., et al. (2023). Universal DNA methylation age across mammalian tissues. Nature Aging, 3(9), 1144-1166. doi:10.1038/s43587-023-00462-6

- Available Online

Power, M. L., Ransome, R. D., Riquier, S., Romaine, L., Jones, G., & Teeling, E. C. (2023). Hibernation telomere dynamics in a shifting climate: Insights from wild greater horseshoe bats. Proceedings of the Royal Society B: Biological Sciences, 290(2008). doi:10.1098/rspb.2023.1589

- Available Online

Lu, A. T., Fei, Z., Haghani, A., Robeck, T. R., Zoller, J. A., Li, C. Z., et al. (2023). Author Correction: Universal DNA methylation age across mammalian tissues (Nature Aging, (2023), 3, 9, (1144-1166), 10.1038/s43587-023-00462-6). Nature Aging, 3(11), 1462. doi:10.1038/s43587-023-00499-7

- Available Online

Vandendriessche, B., Martel, A., Mai, M., Teeling, E. C., & Vernes, S. C. (2024). The genome sequence of the particolored bat, Vespertilio murinus Linnaeus, 1758. Wellcome Open Research, 9. doi:10.12688/wellcomeopenres.22606.1

- Available Online

Webster, C. F., Smotherman, M., Pippel, M., Brown, T., Winkler, S., Pieri, M., et al. (2024). The genome sequence of Tadarida brasiliensis I. Geoffroy Saint-Hilaire, 1824 [Molossidae; Tadarida]. Wellcome Open Research, 9. doi:10.12688/wellcomeopenres.20603.1

- Available Online

Cooper, L. N., Ansari, M. Y., Capshaw, G., Galazyuk, A., Lauer, A. M., Moss, C. F., et al. (2024). Bats as instructive animal models for studying longevity and aging. Annals of the New York Academy of Sciences. doi:10.1111/nyas.15233

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Ruedi, M., Vernes, S. C., Teeling, E. C., & Mai, M. (2024). The genome sequence of Daubenton’s bat, Myotis daubentonii (Kuhl, 1817). Wellcome Open Research, 9. doi:10.12688/wellcomeopenres.21081.1

- Available Online

Lyu, Y. X., Fu, Q., Wilczok, D., Ying, K., King, A., Antebi, A., et al. (2024). Longevity biotechnology: bridging AI, biomarkers, geroscience and clinical applications for healthy longevity. Aging, 16(20), 12955-12976. doi:10.18632/aging.206135

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Simmons, N. B., Ingala, M. R., Pieri, M., O'Toole, B. P., Gray, J. L., Philge, P., et al. (2024). The genome sequence of Molossus alvarezi González-Ruiz, Ramírez-Pulido and Arroyo-Cabrales, 2011 (Chiroptera, Molossidae). Wellcome Open Research, 9. doi:10.12688/wellcomeopenres.22726.1

- Available Online

Uvizl, M., Puechmaille, S. J., Power, S., Pippel, M., Carthy, S., Haerty, W., et al. (2024). Comparative Genome Microsynteny Illuminates the Fast Evolution of Nuclear Mitochondrial Segments (NUMTs) in Mammals. Molecular Biology and Evolution, 41(1). doi:10.1093/molbev/msad278

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Millar, A., Vernes, S. C., Teeling, E. C., & Mai, M. (2024). The genome sequence of the Brown Long-eared bat, Plecotus auritus (Linnaeus 1758). Wellcome Open Research, 9. doi:10.12688/wellcomeopenres.21501.1

- Available Online

Alvarez van Tussenbroek, I., Knörnschild, M., Nagy, M., O'Toole, B. P., Formenti, G., Philge, P., et al. (2024). The genome sequence of Rhynchonycteris naso, Peters, 1867 (Chiroptera, Emballonuridae, Rhynchonycteris). Wellcome Open Research, 9. doi:10.12688/wellcomeopenres.19959.1

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Foley, N. M., Harris, A. J., Bredemeyer, K. R., Ruedi, M., Puechmaille, S. J., Teeling, E. C., et al. (2024). Karyotypic stasis and swarming influenced the evolution of viral tolerance in a species-rich bat radiation. Cell Genomics, 4(2). doi:10.1016/j.xgen.2023.100482

- Available Online

Ruedi, M., Vernes, S. C., Teeling, E. C., Mai, M., Darwin Tree of Life Barcoding collective., Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team., et al. (2024). The genome sequence of Daubenton's bat, <i>Myotis daubentonii</i> (Kuhl, 1817).. Wellcome open research, 9, 107. doi:10.12688/wellcomeopenres.21081.1

- Available Online

Millar, A., Vernes, S. C., Teeling, E. C., Mai, M., Natural History Museum Genome Acquisition Lab., Darwin Tree of Life Barcoding collective., et al. (2024). The genome sequence of the Brown Long-eared bat, <i>Plecotus auritus</i> (Linnaeus 1758).. Wellcome open research, 9, 246. doi:10.12688/wellcomeopenres.21501.1

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Dr Paola Valentini

Managò, F., Scheggia, D., Pontillo, M., Mereu, M., Mastrogiacomo, R., Udayan, G., et al. (2023). Dopaminergic signalling and behavioural alterations by Comt–Dtnbp1 genetic interaction and their clinical relevance. British Journal of Pharmacology, 180(19), 2514-2531. doi:10.1111/bph.16147

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Mr Conor Whelan

Burke, R., McCabe, A., Sonawane, N. R., Rathod, M. H., Whelan, C. V., McCabe, P. F., & Kacprzyk, J. (2023). Arabidopsis cell suspension culture and RNA sequencing reveal regulatory networks underlying plant-programmed cell death. Plant Journal, 115(6), 1465-1485. doi:10.1111/tpj.16407

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Dr Craig Wilding

Hedtke, S. M., Post, R. J., Feleke, S. M., Gebretsadik, F. S., Boakye, D. A., Krueger, A., et al. (2024). Cytotaxonomic characterization and estimation of migration patterns of onchocerciasis vectors (Simulium damnosum sensu lato) in northwestern Ethiopia based on RADSeq data. PLoS Neglected Tropical Diseases, 18(1). doi:10.1371/journal.pntd.0011868

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Cunnington, A. V., Shum, P., Wilding, C. S., & Mariani, S. (2024). Exploring intertidal sea anemones Actinia equina as natural eDNA samplers for coastal biodiversity assessment. Marine Ecology Progress Series, 743, 159-165. doi:10.3354/meps14650

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Assoc Professor Tom Wilkinson

Rao, S. A. K., Carolan, J. C., & Wilkinson, T. L. (2024). Erratum: Correction: Proteomic profiling of cereal aphid saliva reveals both ubiquitous and adaptive secreted proteins (PloS one (2013) 8 2 (e57413)). PloS one, 19(5), e0304429. doi:10.1371/journal.pone.0304429

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Dr Katharina Wollenberg Valero

Kosch, T. A., Crawford, A. J., Lockridge Mueller, R., Wollenberg Valero, K. C., Power, M. L., Rodríguez, A., et al. (2024). Comparative analysis of amphibian genomes: An emerging resource for basic and applied research. Molecular Ecology Resources. doi:10.1111/1755-0998.14025

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Mincarelli, L. F., Turner, A., Anderson, G., & Wollenberg Valero, K. (2024). Exposure to Plasticiser DEHP Affects Eggs Spawned by Blue Mussels: A Possible Risk to Fertilisation?. Toxics, 12(3). doi:10.3390/toxics12030172

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Gilbert, E., Žagar, A., López-Darias, M., Megía-Palma, R., Lister, K. A., Jones, M. D., et al. (2024). Environmental factors influence cross-talk between a heat shock protein and an oxidative stress protein modification in the lizard Gallotia galloti. PLoS ONE, 19(3 March). doi:10.1371/journal.pone.0300111

- Available Online

Valero, K. C. W. (2024). Brief Communication: The Predictable Network Topology of Evolutionary Genomic Constraint. Molecular Biology and Evolution, 41(3). doi:10.1093/molbev/msae033

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Dr Jonathan Yearsley

Golléty, C., Yearsley, J., Migné, A., & Davoult, D. (2024). Functioning of a canopy-dominated intertidal community during emersion: highly productive but heterotrophic at the annual scale. Marine Biology, 171(4). doi:10.1007/s00227-024-04395-5

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Media

Dr Jan-Robert Baars

Whelan, R., & Baars, J. -R. (2023). The new invasives. Retrieved from https://inyournature.buzzsprout.com/

 

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Other

Dr Lipe Renato Dantas Mendes

Dantas Mendes, L. R., Pschenyckyj, C., Mozafari, B., Bruen, M., O'Loughlin, F., & Renou-Wilson, F. (2024). Harmful effluents from a degraded peatland catchment following rainstorms. doi:10.5194/egusphere-egu24-2388

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Dr Elke Eichelmann

Jessen, L., Eichelmann, E., Fuchs, A., & Cott, G. (2024). Carbon dioxide fluxes from an Irish saltmarsh. doi:10.5194/egusphere-egu24-15567

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Dr Andrea Fuchs

Fuchs, A., Burke, S., Delamer, I., & Cott, G. (2024). Estimating current and future saltmarsh areas and carbon storage in Irish Blue Carbon habitats. doi:10.5194/egusphere-egu24-15255

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Dr Florence Renou-Wilson

Dantas Mendes, L. R., Pschenyckyj, C., Mozafari, B., Bruen, M., O'Loughlin, F., & Renou-Wilson, F. (2024). Harmful effluents from a degraded peatland catchment following rainstorms. doi:10.5194/egusphere-egu24-2388

- Available Online
 

O'Loughlin, F., Mozafari, B., Bruen, M., Donohue, S., & Renou-Wilson, F. (2024). Lessons learned from Hydrological Modelling of Northern Temperate Peatlands. doi:10.5194/egusphere-egu24-16791

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Preprint

Dr Kaylee Beine

Beine, K., Feugere, L., Turner, A., & Valero, K. W. (2024). Network architecture of transcriptomic stress responses in zebrafish embryos. doi:10.1101/2024.06.30.601387

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Dr Chandra Bellasio

Bellasio, C. (2024). Quantifying photosynthetic restrictions. doi:10.1101/2024.05.24.595758

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Dr Nicholas Brereton

Cai, W., Haddad, M., Haddad, R., Kesten, I., Hoffman, T., Laan, R., et al. (2023). Gut microbiota promotes pain in fibromyalgia. doi:10.1101/2023.10.24.563794

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Sas, E., Frémont, A., Gonzalez, E., Sarrazin, M., Barnabé, S., Labrecque, M., et al. (2024). Untargeted metabolomics reveals anion and organ-specific biochemistry of salinity tolerance in willow. doi:10.1101/2024.07.16.603755

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Brereton, N., Gonzalez, E., Lee, M., Tierney, B., Lipieta, N., Flores, P., et al. (2024). Spaceflight alters host-gut microbiota interactions. doi:10.21203/rs.3.rs-3879489/v1

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Gonzalez, E., Lee, M. D., Tierney, B. T., Lipieta, N., Flores, P., Mishra, M., et al. (2024). Spaceflight alters host-gut microbiota interactions. doi:10.1101/2024.01.18.576275

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Dr Simone Ciuti

Ryan, A., Zintl, A., Griffin, L., Quinn, M., Haigh, A., Sabbatini, P., et al. (2024). Fallow deer approaching humans are also more likely to be seropositive for<i>Toxoplasma gondii</i>. doi:10.1101/2024.08.03.606274

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Kaur, P., Ciuti, S., Salter-Townshend, M., & Farine, D. (2024). Using an agent based model to inform sampling design for animal social network analysis. doi:10.1101/2024.05.25.595870

- Available Online
 

Griffin, L., Finnegan, L., Duval, J., Ciuti, S., Morera-Pujol, V., Li, H., & Burton, C. (2024). Vulnerable caribou and moose populations display contrasting responses to mountain pine beetle outbreaks and management.. doi:10.1101/2024.09.23.614365

- Available Online
 

Kaur, P., Ciuti, S., Reinking, A. K., Beck, J. L., & Salter-Townshend, M. (2024). aniSNA : An R package to assess bias and uncertainty in social networks obtained from animals sampled via direct observations or satellite telemetry. doi:10.1101/2024.05.10.593659

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Dr Julian Fennessy

Coimbra, R. T. F., Winter, S., Muneza, A., Fennessy, S., Otiende, M., Mijele, D., et al. (2023). Genomic analysis reveals limited hybridization among three giraffe species in Kenya. doi:10.1101/2023.09.12.557229

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Dr Zixia Huang

Zeng, Z., Ni, J., Huang, Z., & Tan, Q. (2024). Expression and Functional Analysis of Fushi Tarazu Transcription Factor 1 (Ftz-F1) in the Regulation of Steroid Hormones During the Gonad Development of Fujian Oyster, Crassostrea Angulata. doi:10.2139/ssrn.4803807

- Available Online
 

Hong, M., & Huang, Z. (2024). The circular RNA expression landscape across tissues implicates their functional roles in the marine gastropod Rapana venosa. doi:10.21203/rs.3.rs-4222158/v1

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Dr Rory Johnson

Amaral, P., Carbonell-Sala, S., De La Vega, F. M., Faial, T., Frankish, A., Gingeras, T., et al. (2023). The status of the human gene catalogue. doi:10.1038/s41586-023-06490-x

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Dr Adam Kane

Reed, T. E., Kane, A., McGinnity, P., & O’Sullivan, R. J. (2023). Soft selection affects introgression dynamics and the viability of populations experiencing intrusion of maladapted individuals. doi:10.1101/2023.09.25.559312

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Dr Rainer Melzer

Shi, J., Schilling, S., & Melzer, R. (2024). Morphological and genetic analysis of inflorescence and flower development in hemp (<i>Cannabis sativa</i>L.). doi:10.1101/2024.01.25.577276

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Dr Virginia Morera-Pujol

Ponti, R., Morera-Pujol, V., Sallent, Á., González-Solís, J., & Ramos, R. (2023). Age-related spatial ecology of Audouin’s gull during the non-breeding season. doi:10.1101/2023.10.23.563411

- Available Online
 

Griffin, L., Finnegan, L., Duval, J., Ciuti, S., Morera-Pujol, V., Li, H., & Burton, C. (2024). Vulnerable caribou and moose populations display contrasting responses to mountain pine beetle outbreaks and management.. doi:10.1101/2024.09.23.614365

- Available Online
 
Dr Susanne Schilling

Shi, J., Schilling, S., & Melzer, R. (2024). Morphological and genetic analysis of inflorescence and flower development in hemp (<i>Cannabis sativa</i>L.). doi:10.1101/2024.01.25.577276

- Available Online
 
Professor Emma Teeling

Athar, F., Zheng, Z., Riquier, S., Zacher, M., Alcock, D., Galazyuk, A., et al. (2024). Limited Cell-Autonomous Anticancer Mechanisms in Long-Lived Bats. doi:10.1101/2024.02.29.582714

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Gorbunova, V., Athar, F., Zheng, Z., Riquier, S., Zacher, M., Galazyuk, A., et al. (2024). Limited Cell-Autonomous Anticancer Mechanisms in Long-Lived Bats. doi:10.21203/rs.3.rs-4001566/v1

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Dr Craig Wilding

Dyer, N. A., Lucas, E. R., Nagi, S. C., McDermott, D. P., Brenas, J. H., Miles, A., et al. (2023). Mechanisms of transcriptional regulation in<i>Anopheles gambiae</i>revealed by allele specific expression. doi:10.1101/2023.11.22.568226

- Available Online
 
Dr Katharina Wollenberg Valero

Beine, K., Feugere, L., Turner, A., & Valero, K. W. (2024). Network architecture of transcriptomic stress responses in zebrafish embryos. doi:10.1101/2024.06.30.601387

- Available Online
 

Kosch, T., Torres-Sánchez, M., Liedtke, C., Summers, K., Yun, M., Crawford, A., et al. (2024). The Amphibian Genomics Consortium: advancing genomic and genetic resources for amphibian research and conservation. doi:10.1101/2024.06.27.601086

- Available Online
 
Dr Jonathan Yearsley

O'Donnell, U., McGee, C. F., Bourke, A., & Yearsley, J. (2024). Understanding historical invasive pest dynamics using a novel data rescue protocol.. doi:10.21203/rs.3.rs-4558446/v1

- Available Online
 

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Report

Dr Marcin Penk

Hands, I., Rapp-Wright, H., Penk, M., Barceló, D., Piggott, J., Barron, L., et al. (2024). Innovative monitoring to prioritise contaminants of emerging concern for Ireland (IMPACT) (455). Wexford Ireland: Environmental Protection Agency.

 

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