Biomolecular and Biomedical Science

School of Biomolecular and Biomedical Science - Research Publications 2023/2024

Below is the list of research publications for the School of Biomolecular and Biomedical Science in the academic year 2023/2024.



Book

Dr Emmanuel Reynaud

Reynaud, E. G., & Tomancák, P. (2024). Light Sheet Fluorescence Microscopy.

 

Back to Top

Chapter

Professor Cormac Murphy

Khan, M. F., Hof, C., Niemcova, P., & Murphy, C. D. (2024). Biotransformation of fluorinated drugs and xenobiotics by the model fungus Cunninghamella elegans. In Methods in Enzymology (Vol. 696, pp. 251-285). doi:10.1016/bs.mie.2023.12.016

- Available Online
 
Dr Emmanuel Reynaud

Bergter, A., Lippert, H., Launay, G., Haas, P., Koester, I., Laissue, P. P., et al. (2024). Commercial and Open-Source Systems. In Light Sheet Fluorescence Microscopy (pp. 149-202).

 

Marcello, M., Accardi, D., Bundshuch, S., Oegema, J., Andreev, A., Reynaud, E. G., & Peychl, J. (2024). Light-Sheet Microscopy Technology in the Multiuser Environment of a Core Imaging Facility – Practical Considerations. In Light Sheet Fluorescence Microscopy (pp. 365-382).

 

Tomancák, P., & Reynaud, E. G. (2024). Let There be Light Sheet. In Light Sheet Fluorescence Microscopy (pp. 1-10).

 

Reynaud, E. G., Peychl, J., & Tomancák, P. (2024). How to Organize a Practical Course on Light Sheet Microscopy. In Light Sheet Fluorescence Microscopy (pp. 345-364).

 

Pampaloni, F., Lachica, E., Paysan, J., & Reynaud, E. G. (2024). A Small Guide on How to Mount a Sample in a Light-Sheet Microscope. In Light Sheet Fluorescence Microscopy (pp. 67-100).

 

Back to Top

Conference Paper

Professor Annette Therese Byrne

Rafsanjani, M. R., Dooney, A., Suresh, R., O’Farrell, A. C., Jarzabek, M. A., Shiels, L., et al. (2024). Using Shapley additive explanations and saliency for interpretation of multiclass classification of PDX spectral data with deep neural networks. In Proceedings of SPIE - The International Society for Optical Engineering Vol. 13011. doi:10.1117/12.3022370

- Available Online
 
Professor William Gallagher

Suresh, R., Nguyen, T. N. Q., Bouzy, P., Stone, N., Jirstrom, K., Rahman, A., et al. (2024). Entropy-based spatial heterogeneity analysis in pathological images for diagnostic applications. In Proceedings of SPIE - The International Society for Optical Engineering Vol. 13011. doi:10.1117/12.3022363

- Available Online
 

Rafsanjani, M. R., McBrien, T., Jirstrom, K., Rahman, A., Prehn, J. H. M., Gallagher, W., & Meade, A. D. (2024). Preliminary evaluation of an automated autoencoder-UNet pipeline for chemical image segmentation and compression with reference to serial ground truth pathology. In Proceedings of SPIE - The International Society for Optical Engineering Vol. 13011. doi:10.1117/12.3022279

- Available Online
 

Rafsanjani, M. R., Jirstrom, K., Rahman, A., Prehn, J. H. M., Gallagher, W., & Meade, A. D. (2024). Fusion and integration pipelines for optical and chemical imaging data for clinical interpretation in ex-vivo diagnosis. In Proceedings of SPIE - The International Society for Optical Engineering Vol. 13011. doi:10.1117/12.3022269

- Available Online
 
Professor Patricia Maguire

Cullivan, S., Mccormack, C., Mccullagh, B., Kevane, B., Maguire, P., Niainle, F., & Gaine, S. (2023). Calibrated automated thrombography demonstrates a hypocoagulable profile in subjects with pulmonary arterial hypertension. In Pulmonary hypertension (pp. PA5178). European Respiratory Society. doi:10.1183/13993003.congress-2023.pa5178

- Available Online
 
Dr Jennifer Mitchell

Corbet, A., & Mitchell, J. (2024). What factors are driving bacterial colon tumor invasion? The role of cyclic adenosine monophosphate in Streptococcus gallolyticus colon cell invasion.. In Microbiology Society Annual Conference. Edinburgh UK.

 

Ralph, A., & Mitchell, J. (2024). A sweet tooth: Does twitching motility in the absence of sugar determine tumour invasion by gut streptococci?. In Microbiology Society Annual Conference 2024 (pp. 519). Edinburgh UK.

 
Assoc Professor Tadhg Ó'Cróinín

Oubihi, S., Clyne, M., & Ó'Cróinín, T. (2024). Phenotypic characterization of the effect of fluoroquinolone resistance on Campylobacter Jejuni. In Microbiology Society Annual Conference.

 

O'Gorman, E., Clyne, M., & Ó'Cróinín, T. (2024). The effects of environmental stresses on Campylobacter jejuni biofilm formation. In Microbiology Society Annual Conference 2024.

 

Turner, A., Zermeño Pérez, D., Mysior, M., Giraldo-Osorno, P. M., García, B., O'Gorman, E., et al. (2024). Modulation of methicillin-resistant Staphylococcus aureus biofilm formation by PEGylated-PDLLA-coated titanium. In World Biomaterials Congress 2024. Daegu, South Korea.

 

Zermeño Pérez, D., Chouirfa, H., Rodriguez, B., Ó'Cróinín, T., Duffy, P., & Dürig, T. (2024). Antifouling and antimicrobial bioresorbable coatings for protection of titanium-based implantable medical devices. In World Biomaterials Congress 2024. Daegu, Korea.

 

Back to Top

Journal article

Ms Cristina Bauset

Seco-Cervera, M., Ortiz-Masiá, D., Macias-Ceja, D. C., Coll, S., Gisbert-Ferrándiz, L., Cosín-Roger, J., et al. (2024). Resistance to apoptosis in complicated Crohn's disease: Relevance in ileal fibrosis.. Biochimica et biophysica acta. Molecular basis of disease, 1870(2), 166966. doi:10.1016/j.bbadis.2023.166966

- Available Online
 
Dr Despina Bazou

Tsallos, D., Ikonen, N., Miettinen, J., Majumder, M. M., Eldfors, S., Parsons, A., et al. (2023). P-374 Stratifying multiple myeloma patients for personalized therapy based on TP53 mutation, deletion, and drug response profiles. Clinical Lymphoma Myeloma and Leukemia, 23, S246. doi:10.1016/s2152-2650(23)01992-4

- Available Online
 

Katsenou, A., O’Farrell, R., Dowling, P., Heckman, C. A., O’Gorman, P., & Bazou, D. (2023). Using Proteomics Data to Identify Personalized Treatments in Multiple Myeloma: A Machine Learning Approach. International Journal of Molecular Sciences, 24(21). doi:10.3390/ijms242115570

- Available Online
 

Kulkarni, A., Bazou, D., & Santos-Martinez, M. J. (2023). Bleeding and Thrombosis in Multiple Myeloma: Platelets as Key Players during Cell Interactions and Potential Use as Drug Delivery Systems. International Journal of Molecular Sciences, 24(21). doi:10.3390/ijms242115855

- Available Online
 

Sheridan, R., Brennan, K., Bazou, D., O’Gorman, P., Matallanas, D., & Mc Gee, M. M. (2024). Multiple Myeloma Derived Extracellular Vesicle Uptake by Monocyte Cells Stimulates IL-6 and MMP-9 Secretion and Promotes Cancer Cell Migration and Proliferation. Cancers, 16(5). doi:10.3390/cancers16051011

- Available Online
 

Bazou, D., & Dowling, P. (2024). Editorial: Multiple Myeloma: Molecular Mechanism and Targeted Therapy. International Journal of Molecular Sciences, 25(7). doi:10.3390/ijms25073799

- Available Online
 
Professor Oliver Blacque

Moran, A. L., Fehilly, J. D., Blacque, O., & Kennedy, B. N. (2023). Gene therapy for RAB28: What can we learn from zebrafish?. Vision Research, 210. doi:10.1016/j.visres.2023.108270

- Available Online
 

Moran, A. L., Louzao-Martinez, L., Norris, D. P., Peters, D. J. M., & Blacque, O. E. (2024). Transport and barrier mechanisms that regulate ciliary compartmentalization and ciliopathies. Nature Reviews Nephrology, 20(2), 83-100. doi:10.1038/s41581-023-00773-2

- Available Online
 

Pir, M. S., Begar, E., Yenisert, F., Demirci, H. C., Korkmaz, M. E., Karaman, A., et al. (2024). CilioGenics: an integrated method and database for predicting novel ciliary genes. Nucleic Acids Research, 52(14), 8127-8145. doi:10.1093/nar/gkae554

- Available Online
 
Dr Gary Brennan

de Diego-Garcia, L., Brennan, G. P., Auer, T., Menendez-Mendez, A., Parras, A., Martin-Gil, A., et al. (2023). CPEB4–CLOCK crosstalk during temporal lobe epilepsy. Epilepsia, 64(10), 2827-2840. doi:10.1111/epi.17736

- Available Online
 

How Lau, K. E., Nguyen, N. T., Kesavan, J. C., Langa, E., Fanning, K., Brennan, G. P., et al. (2024). Differential microRNA editing may drive target pathway switching in human temporal lobe epilepsy. Brain Communications, 6(1). doi:10.1093/braincomms/fcad355

- Available Online
 
Dr Kieran Brennan

García-Posadas, L., Romero-Castillo, I., Brennan, K., McGee, M. M., Blanco-Fernández, A., & Diebold, Y. (2023). Isolation and Characterization of Human Conjunctival Mesenchymal Stromal Cells and Their Extracellular Vesicles. Investigative Ophthalmology and Visual Science, 64(12). doi:10.1167/iovs.64.12.38

- Available Online
 

Welsh, J. A., Goberdhan, D. C. I., O’Driscoll, L., Buzas, E. I., Blenkiron, C., Bussolati, B., et al. (2024). Minimal information for studies of extracellular vesicles (MISEV2023): From basic to advanced approaches. Journal of Extracellular Vesicles, 13(2). doi:10.1002/jev2.12404

- Available Online
 

Sheridan, R., Brennan, K., Bazou, D., O’Gorman, P., Matallanas, D., & Mc Gee, M. M. (2024). Multiple Myeloma Derived Extracellular Vesicle Uptake by Monocyte Cells Stimulates IL-6 and MMP-9 Secretion and Promotes Cancer Cell Migration and Proliferation. Cancers, 16(5). doi:10.3390/cancers16051011

- Available Online
 
Professor Geraldine Butler

Daneshnia, F., Floyd, D. J., Ryan, A. P., Ghahfarokhy, P. M., Ebadati, A., Jusuf, S., et al. (2024). Evaluation of outbreak persistence caused by multidrug-resistant and echinocandin-resistant Candida parapsilosis using multidimensional experimental and epidemiological approaches. Emerging Microbes and Infections, 13(1). doi:10.1080/22221751.2024.2322655

- Available Online
 

Zhai, B., Liao, C., Jaggavarapu, S., Tang, Y., Rolling, T., Ning, Y., et al. (2024). Antifungal heteroresistance causes prophylaxis failure and facilitates breakthrough Candida parapsilosis infections. Nature Medicine. doi:10.1038/s41591-024-03183-4

- Available Online
 

Ryan, A. P., Groenewald, M., Smith, M. T., Holohan, C., Boekhout, T., Wolfe, K. H., & Butler, G. (2024). Genome Analysis of a Newly Discovered Yeast Species, Hanseniaspora menglaensis. Journal of Fungi, 10(3). doi:10.3390/jof10030180

- Available Online
 

Heneghan, P. G., Ryan, A. P., Cinnéide, E., Davies, J., Bracken, C., Ogundipe, V., et al. (2024). Draft genome sequence of the yeast Schwanniomyces capriottii strain UCD805, isolated from soil in Ireland. Microbiology Resource Announcements, 13(3). doi:10.1128/mra.01073-23

- Available Online
 

McLaughlin, R. W., Hession, C., Bergin, S., Cosgrove, A., Dowd, A., Garvey, N., et al. (2024). Genome sequences of two isolates of the yeast Candida zeylanoides: UCD849 from soil in Ireland, and AWD from an African wild dog. Microbiology Resource Announcements, 13(3). doi:10.1128/mra.01081-23

- Available Online
 

Bergin, S., Doorley, L. A., Rybak, J. M., Wolfe, K. H., Butler, G., Cuomo, C. A., & Rogers, P. D. (2024). Analysis of clinical Candida parapsilosis isolates reveals copy number variation in key fluconazoleresistance genes. Antimicrobial Agents and Chemotherapy, 68(6). doi:10.1128/aac.01619-23

- Available Online
 

Wickramasinghe, D. N., Lyon, C. M., Lee, S., Hepworth, O. W., Priest, E. L., Maufrais, C., et al. (2024). Variations in candidalysin amino acid sequence influence toxicity and host responses. mBio, 15(8). doi:10.1128/mbio.03351-23

- Available Online
 
Professor Annette Therese Byrne

Ntafoulis, I., Kleijn, A., Ju, J., Jimenez-Cowell, K., Fabro, F., Klein, M., et al. (2023). Ex vivo drug sensitivity screening predicts response to temozolomide in glioblastoma patients and identifies candidate biomarkers. British Journal of Cancer, 129(8), 1327-1338. doi:10.1038/s41416-023-02402-y

- Available Online
 

Fabro, F., Kers, T. V., Feller, K. J., Beerens, C., Ntafoulis, I., Idbaih, A., et al. (2023). Genomic Exploration of Distinct Molecular Phenotypes Steering Temozolomide Resistance Development in Patient-Derived Glioblastoma Cells. International Journal of Molecular Sciences, 24(21). doi:10.3390/ijms242115678

- Available Online
 

Teo, Z. L., O’Connor, M. J., Versaci, S., Clarke, K. A., Brown, E. R., Percy, L. W., et al. (2023). Combined PARP and WEE1 inhibition triggers anti-tumor immune response in BRCA1/2 wildtype triple-negative breast cancer. npj Breast Cancer, 9(1). doi:10.1038/s41523-023-00568-5

- Available Online
 

Connor, K., Golebiewska, A., & Byrne, A. T. (2024). Challenging the status quo to improve the translational potential of preclinical oncology studies. Nature Reviews Cancer. doi:10.1038/s41568-024-00756-w

- Available Online
 

Prior, O., Macarro, C., Navarro, V., Monreal, C., Ligero, M., Garcia-Ruiz, A., et al. (2024). Identification of Precise 3D CT Radiomics for Habitat Computation by Machine Learning in Cancer. Radiology: Artificial Intelligence, 6(2). doi:10.1148/ryai.230118

- Available Online
 

Prior, O., Macarro, C., Navarro, V., Monreal, C., Ligero, M., Garcia-Ruiz, A., et al. (2024). Erratum for: Identification of Precise 3D CT Radiomics for Habitat Computation by Machine Learning in Cancer (Radiology: Artificial Intelligence 2024;6(2) https://doi.org/10.1148/ryai.230118). Radiology: Artificial Intelligence, 6(3). doi:10.1148/ryai.249001

- Available Online
 

Brown, K. H., Kerr, B. N., Pettigrew, M., Connor, K., Miller, I. S., Shiels, L., et al. (2024). A comparative analysis of preclinical computed tomography radiomics using cone-beam and micro-computed tomography scanners. Physics and Imaging in Radiation Oncology, 31. doi:10.1016/j.phro.2024.100615

- Available Online
 
Dr Patrick Caffrey

Cowen, T., Walmsley, S., Karim, K., Haser, R., Caffrey, P., Piletska, E., et al. (2023). A Biomimetic Polymer for the Extraction and Purification of Superior Analogues of Amphotericin B. Biomimetics, 8(3). doi:10.3390/biomimetics8030273

- Available Online
 

Hogan, M., Song, Y., Muldoon, J., & Caffrey, P. (2024). Generation of New Glycoanalogues of Polyene Antibiotics by Synthetic Biology—Testing Current Technical Boundaries. SynBio, 2(1), 31-55. doi:10.3390/synbio2010003

- Available Online
 

Song, Y., Hogan, M., Muldoon, J., Evans, P., & Caffrey, P. (2024). Characterisation of Modular Polyketide Synthases Designed to Make Pentaene Analogues of Amphotericin B. Molecules, 29(6). doi:10.3390/molecules29061396

- Available Online
 
Assoc Professor Gerard Cagney

Zaiatz-Bittencourt, V., Jones, F., Tosetto, M., Scaife, C., Cagney, G., Jones, E., et al. (2023). Butyrate limits human natural killer cell effector function. Scientific Reports, 13(1). doi:10.1038/s41598-023-29731-5

- Available Online
 

Healy, C., Byrne, J., Raj Suasi, S., Föcking, M., Mongan, D., Kodosaki, E., et al. (2024). Differential expression of haptoglobin in individuals at clinical high risk of psychosis and its association with global functioning and clinical symptoms. Brain, Behavior, and Immunity, 117, 175-180. doi:10.1016/j.bbi.2023.12.018

- Available Online
 

Byrne, J. F., Healy, C., Föcking, M., Susai, S. R., Mongan, D., Wynne, K., et al. (2024). Proteomic Biomarkers for the Prediction of Transition to Psychosis in Individuals at Clinical High Risk: A Multi-cohort Model Development Study. Schizophrenia Bulletin, 50(3), 579-588. doi:10.1093/schbul/sbad184

- Available Online
 

Kelly, S., Tham, J. L., McKeever, K., Dillon, E., O’Connell, D., Scholz, D., et al. (2024). Comprehensive Proteomics Analysis of Polyhydroxyalkanoate (PHA) Biology in Pseudomonas putida KT2440: The Outer Membrane Lipoprotein OprL is a Newly Identified Phasin. Molecular and Cellular Proteomics, 23(5). doi:10.1016/j.mcpro.2024.100765

- Available Online
 

Oliviero, G., Wynne, K., Andrews, D., Crean, J., Kolch, W., & Cagney, G. (2024). Expression Proteomics and Histone Analysis Reveal Extensive Chromatin Network Changes and a Role for Histone Tail Trimming during Cellular Differentiation. Biomolecules, 14(7). doi:10.3390/biom14070747

- Available Online
 
Dr Federico Cerrone

Cerrone, F., Zhou, B., Mouren, A., Avérous, L., Conroy, S., Simpson, J. C., et al. (2023). Pseudomonas umsongensis GO16 as a platform for the in vivo synthesis of short and medium chain length polyhydroxyalkanoate blends. Bioresource Technology, 387. doi:10.1016/j.biortech.2023.129668

- Available Online
 
Dr Colm Collins

Collins, C. B., Nguyen, T. T., Leddy, R. S., Alula, K. M., Yeckes, A. R., Strassheim, D., et al. (2024). Heat shock factor 1 drives regulatory T-cell induction to limit murine intestinal inflammation. Mucosal Immunology, 17(1), 94-110. doi:10.1016/j.mucimm.2023.11.003

- Available Online
 
Ms Patrizia Colucci

Piano, I., Votta, A., Colucci, P., Corsi, F., Vitolo, S., Cerri, C., et al. (2023). Anti-inflammatory reprogramming of microglia cells by metabolic modulators to counteract neurodegeneration; a new role for Ranolazine. Scientific Reports, 13(1). doi:10.1038/s41598-023-47540-8

- Available Online
 
Dr Derek Costello

Pinki, F., Costello, D. A., & Stewart, G. (2023). Regional investigation of UT-B urea transporters in the rat brain. Biochemistry and Biophysics Reports, 36. doi:10.1016/j.bbrep.2023.101563

- Available Online
 
Assoc Professor John Crean

Krupa, I., Treacy, N. J., Clerkin, S., Davis, J. L., Miller, A. F., Saiani, A., et al. (2024). Protocol for the Growth and Maturation of hiPSC-Derived Kidney Organoids using Mechanically Defined Hydrogels. Current Protocols, 4(7). doi:10.1002/cpz1.1096

- Available Online
 

Oliviero, G., Wynne, K., Andrews, D., Crean, J., Kolch, W., & Cagney, G. (2024). Expression Proteomics and Histone Analysis Reveal Extensive Chromatin Network Changes and a Role for Histone Tail Trimming during Cellular Differentiation. Biomolecules, 14(7). doi:10.3390/biom14070747

- Available Online
 
Dr Jessica Davis

Krupa, I., Treacy, N. J., Clerkin, S., Davis, J. L., Miller, A. F., Saiani, A., et al. (2024). Protocol for the Growth and Maturation of hiPSC-Derived Kidney Organoids using Mechanically Defined Hydrogels. Current Protocols, 4(7). doi:10.1002/cpz1.1096

- Available Online
 
Dr Monica De Gaetano

Rago, F., Melo, E. M., Miller, L. M., Duray, A. M., Batista Felix, F., Vago, J. P., et al. (2024). Treatment with lipoxin A<inf>4</inf> improves influenza A infection outcome, induces macrophage reprogramming, anti-inflammatory and pro-resolutive responses. Inflammation Research. doi:10.1007/s00011-024-01939-9

- Available Online
 

Conroy, L. J., McCann, A., Zhang, N., & de Gaetano, M. (2024). The role of nanosystems in the delivery of glucose-lowering drugs for the preemption and treatment of diabetes-associated atherosclerosis. American Journal of Physiology - Cell Physiology, 326(5), C1398-C1409. doi:10.1152/ajpcell.00695.2023

- Available Online
 
Professor William Gallagher

O’Reilly, E., Khalifa, K., Cosgrave, J., Azam, H., Prencipe, M., Simpson, J. C., et al. (2023). Cannabidiol Inhibits the Proliferation and Invasiveness of Prostate Cancer Cells. Journal of Natural Products, 86(9), 2151-2161. doi:10.1021/acs.jnatprod.3c00363

- Available Online
 

Krzyzanowska, A., Barron, S., Higgins, D. F., Loughman, T., O'Neill, A., Sheehan, K. M., et al. (2023). Development, Validation, and Clinical Utility of a Six-gene Signature to Predict Aggressive Prostate Cancer. European Urology Focus, 9(6), 983-991. doi:10.1016/j.euf.2023.04.004

- Available Online
 

Lawler, M., Sullivan, R., Abou-Alfa, G. K., McCloskey, K., Keatley, D., Feighan, J., et al. (2023). Health diplomacy in action: The cancer legacy of the Good Friday Agreement. Journal of Cancer Policy, 38. doi:10.1016/j.jcpo.2023.100448

- Available Online
 

McCaffrey, C., Jahangir, C., Murphy, C., Burke, C., Gallagher, W. M., & Rahman, A. (2024). Artificial intelligence in digital histopathology for predicting patient prognosis and treatment efficacy in breast cancer. Expert Review of Molecular Diagnostics, 24(5), 363-377. doi:10.1080/14737159.2024.2346545

- Available Online
 

Tuzova, A. V., Moran, B., Russell, N. M., Das, S., Delahaye, F., Silva, R., et al. (2024). Deciphering epigenetic regulation of enhancers in high-risk prostate cancer. Genes Chromosomes and Cancer, 63(2). doi:10.1002/gcc.23218

- Available Online
 

Jahangir, C. A., Page, D. B., Broeckx, G., Gonzalez, C. A., Burke, C., Murphy, C., et al. (2024). Image-based multiplex immune profiling of cancer tissues: translational implications. A report of the International Immuno-oncology Biomarker Working Group on Breast Cancer. Journal of Pathology, 262(3), 271-288. doi:10.1002/path.6238

- Available Online
 

Gao, B., Ward, E., Blümel, A., Conroy, E., Moore, R., Cremin, G., et al. (2024). Abstract PO3-18-08: Rational therapeutic combination of Bromodomain and Extra-Terminal domain (BET) inhibitor and Fibroblast Growth Factor Receptor (FGFR) inhibitor for treatment of invasive lobular carcinoma. Cancer Research, 84(9_Supplement). doi:10.1158/1538-7445.sabcs23-po3-18-08

- Available Online
 

Kinsella, Z., Nyarko, H., Blümel, A., Lucas, M., Kalinska-Lysiak, D., Gonzalez, C. A., et al. (2024). Abstract PS16-10: SPATIAL IMMUNE CELL DISTRIBUTION CAN REFINE PROGNOSIS IN EARLY-STAGE ER+/HER2-/LN- BREAST CANCER. Cancer Research, 84(9_Supplement). doi:10.1158/1538-7445.sabcs23-ps16-10

- Available Online
 

Moore, R., Blümel, A., Ward, E., Sainsbury, E., Conroy, E., O’Brien, F., et al. (2024). Abstract PO2-24-04: Exploring the role and therapeutic potential of Ubiquitin Specific Peptidase 11 (USP11) in estrogen receptor positive breast cancer. Cancer Research, 84(9_Supplement). doi:10.1158/1538-7445.sabcs23-po2-24-04

- Available Online
 

Walsh, M., Jordan, A., Schäfer, L., Joha, J., Heapes, B., Noonan, M., et al. (2024). IMPROVER (Involving Men with Prostate Cancer in Engaged Research): Assessing Patient Experience With Testing, Diagnosis, And Surveillance. Clinical Genitourinary Cancer, 22(3). doi:10.1016/j.clgc.2024.102063

- Available Online
 
Dr Jana Haase

Kalinichenko, L. S., Kornhuber, J., Sinning, S., Haase, J., & Müller, C. P. (2024). Serotonin Signaling through Lipid Membranes. ACS Chemical Neuroscience, 15(7), 1298-1320. doi:10.1021/acschemneuro.3c00823

- Available Online
 
Dr Rebecca Henry

Makarava, N., Mychko, O., Molesworth, K., Chang, J. C. Y., Henry, R. J., Tsymbalyuk, N., et al. (2023). Region-Specific Homeostatic Identity of Astrocytes Is Essential for Defining Their Response to Pathological Insults. Cells, 12(17). doi:10.3390/cells12172172

- Available Online
 

Barrett, J. P., Aubrecht, T. G., Smith, A., Vaida, M., Henry, R. J., Doran, S. J., et al. (2024). Molecular Pathway Changes Associated with Different Post-Conditioning Exercise Interventions After Experimental TBI. Journal of Neurotrauma. doi:10.1089/neu.2024.0120

- Available Online
 

Eagle, S. R., & Henry, R. J. (2024). Applying Dynamical Systems Theory to Improve Personalized Medicine Following Mild Traumatic Brain Injury. Neurotrauma Reports, 5(1), 671-679. doi:10.1089/neur.2024.0040

- Available Online
 
Dr David Hughes

Hughes, D. J., Schomburg, L., Jenab, M., Biessy, C., Méplan, C., Moskal, A., et al. (2023). Prediagnostic selenium status, selenoprotein gene variants and association with breast cancer risk in a European cohort study. Free Radical Biology and Medicine, 209, 381-393. doi:10.1016/j.freeradbiomed.2023.10.401

- Available Online
 

Galati, L., Gupta, P., Tufaro, A., Marinaro, M., Saponaro, C., Escobar Marcillo, D. I., et al. (2023). Evaluation of human papillomavirus DNA in colorectal cancer and adjacent mucosal tissue samples. Infectious Agents and Cancer, 18(1). doi:10.1186/s13027-023-00552-5

- Available Online
 

Papadimitriou, N., Bull, C. J., Jenab, M., Hughes, D. J., Bell, J. A., Sanderson, E., et al. (2023). Separating the effects of early and later life adiposity on colorectal cancer risk: a Mendelian randomization study. BMC Medicine, 21(1). doi:10.1186/s12916-022-02702-9

- Available Online
 

Alexander, J. L., Posma, J. M., Scott, A., Poynter, L., Mason, S. E., Doria, M. L., et al. (2023). Pathobionts in the tumour microbiota predict survival following resection for colorectal cancer. Microbiome, 11(1). doi:10.1186/s40168-023-01518-w

- Available Online
 

Mandle, H. B., Jenab, M., Gunter, M. J., Tjønneland, A., Olsen, A., Dahm, C. C., et al. (2024). Inflammation and Gut Barrier Function-Related Genes and Colorectal Cancer Risk in Western European Populations.. Mutagenesis, geae008. doi:10.1093/mutage/geae008

- Available Online
 

Rayman, M. P., Schomburg, L., Zhang, J., Taylor, E. W., Du Laing, G., Beck, M., et al. (2024). Comment on Ambra et al. Could Selenium Supplementation Prevent COVID-19? A Comprehensive Review of Available Studies. Molecules 2023, 28, 4130. Molecules, 29(11). doi:10.3390/molecules29112466

- Available Online
 
Professor Breandán Kennedy

Moran, A. L., Fehilly, J. D., Blacque, O., & Kennedy, B. N. (2023). Gene therapy for RAB28: What can we learn from zebrafish?. Vision Research, 210. doi:10.1016/j.visres.2023.108270

- Available Online
 

Swords, E., Kennedy, B. N., & Tonelotto, V. (2024). Assessment of ferroptosis as a promising candidate for metastatic uveal melanoma treatment and prognostication. Frontiers in Pharmacology, 15. doi:10.3389/fphar.2024.1466896

- Available Online
 
Professor Patricia Maguire

Kenny, M., Shukla, R., Weiss, L., Fouhy, E., Murphy, C., Ní Áinle, F., et al. (2023). PB1520 Deep Learning Extracts Embedded Signatures Associated with Pregnancy and Preeclampsia from Circulating Vesicle Profiles. Research and Practice in Thrombosis and Haemostasis, 7, 101948. doi:10.1016/j.rpth.2023.101948

- Available Online
 

Kelliher, S., Gamba, S., Weiss, L., Marchetti, M., Schieppati, F., Ní Áinle, F., et al. (2023). OC 56.1 Platelets as Versatile Effectors of Thromboinflammation: An MPN Multi-Omics Collaborative. Research and Practice in Thrombosis and Haemostasis, 7, 100485. doi:10.1016/j.rpth.2023.100485

- Available Online
 

Weiss, L., Szklanna, P., Kelliher, S., Wynne, K., Blanco, A., O’Doherty, A., et al. (2023). OC 16.5 Rivaroxaban in Combination with Low-Dose Aspirin is Associated with a Reduction in Pro-Inflammatory and Pro-thrombotic Circulating Vesicle Signatures in Patients with Cardiovascular Disease. Research and Practice in Thrombosis and Haemostasis, 7, 100305. doi:10.1016/j.rpth.2023.100305

- Available Online
 

Sigle, M., Rohlfing, A. K., Kenny, M., Scheuermann, S., Sun, N., Graeßner, U., et al. (2023). Translating genomic tools to Raman spectroscopy analysis enables high-dimensional tissue characterization on molecular resolution. Nature Communications, 14(1). doi:10.1038/s41467-023-41417-0

- Available Online
 

Weiss, L., O'Doherty, A., Uhrig, W., Szklanna, P. B., Hong-Minh, M., Wynne, K., et al. (2024). Rivaroxaban, in combination with low-dose aspirin, is associated with a reduction in proinflammatory and prothrombotic circulating vesicle signatures in patients with cardiovascular disease. Journal of Thrombosis and Haemostasis. doi:10.1016/j.jtha.2024.09.030

- Available Online
 

Weiss, L., Macleod, H., & Maguire, P. B. (2024). Platelet-derived extracellular vesicles in cardiovascular disease and treatment - From maintaining homeostasis to targeted drug delivery. Current Opinion in Hematology. doi:10.1097/MOH.0000000000000845

- Available Online
 

Mc Mahon, A., Weiss, L., Bennett, K., Curley, G., Ní Ainle, F., & Maguire, P. (2024). Extracellular vesicles in disorders of hemostasis following traumatic brain injury. Frontiers in Neurology, 15. doi:10.3389/fneur.2024.1373266

- Available Online
 

O’Reilly, D., Murphy, C. A., Moore, C. M., Ní Áinle, F., Gormley, I. C., Morrell, C. N., et al. (2024). Markers of platelet activation foR identification of late onset sEpsis in infaNTs: PARENT study protocol. Pediatric Research, 95(3), 852-856. doi:10.1038/s41390-023-02812-x

- Available Online
 

Macleod, H., Weiss, L., Kelliher, S., Kevane, B., Áinle, F. N., & Maguire, P. B. (2024). The effect of UVA light/8-methoxypsoralen exposure used in Extracorporeal Photopheresis treatment on platelets and extracellular vesicles. PLoS ONE, 19(2 February). doi:10.1371/journal.pone.0293687

- Available Online
 

Weiss, L., Uhrig, W., Kelliher, S., Szklanna, P. B., Prendiville, T., Comer, S. P., et al. (2024). Proteomic analysis of extracellular vesicle cargoes mirror the cardioprotective effects of rivaroxaban in patients with venous thromboembolism. Proteomics - Clinical Applications, 18(4). doi:10.1002/prca.202300014

- Available Online
 

Kelliher, S., Gamba, S., Weiss, L., Shen, Z., Marchetti, M., Schieppati, F., et al. (2024). Platelet proteomic profiling reveals potential mediators of immunothrombosis and proteostasis in myeloproliferative neoplasms. Blood Advances, 8(16), 4276-4280. doi:10.1182/bloodadvances.2023012016

- Available Online
 
Dr Mario Manresa

Matellan, C., Kennedy, C., Santiago-Vela, M. I., Hochegger, J., Ní Chathail, M. B., Wu, A., et al. (2024). The TNFSF12/TWEAK Modulates Colonic Inflammatory Fibroblast Differentiation and Promotes Fibroblast-Monocyte Interactions. Journal of Immunology, 212(12), 1958-1970. doi:10.4049/jimmunol.2300762

- Available Online
 
Dr Niamh Martin

Nolan, T. M., Sala-Comorera, L., Reynolds, L. J., Martin, N. A., Stephens, J. H., O'Hare, G. M. P., et al. (2023). Bacteriophages from faecal contamination are an important reservoir for AMR in aquatic environments. Science of the Total Environment, 900. doi:10.1016/j.scitotenv.2023.165490

- Available Online
 

Nolan, T. M., Martin, N. A., Reynolds, L. J., Sala-Comorera, L., O'Hare, G. M. P., O'Sullivan, J. J., & Meijer, W. G. (2024). Agricultural and urban practices are correlated to changes in the resistome of riverine systems. Science of the Total Environment, 927. doi:10.1016/j.scitotenv.2024.172261

- Available Online
 

Martin, N. A., Reynolds, L. J., Sala-Comorera, L., Nolan, T. M., Stephens, J. H., Gitto, A., et al. (2024). Quantitative source apportionment of faecal indicator bacteria from anthropogenic and zoogenic sources of faecal contamination. Marine Pollution Bulletin, 205. doi:10.1016/j.marpolbul.2024.116591

- Available Online
 
Dr Tess McCann

Shrestha, R., McCann, T., Saravanan, H., Lieberth, J., Koirala, P., & Bloomekatz, J. (2023). The myocardium utilizes a platelet-derived growth factor receptor alpha (Pdgfra)-phosphoinositide 3-kinase (PI3K) signaling cascade to steer toward the midline during zebrafish heart tube formation.. eLife, 12, e85930. doi:10.7554/elife.85930

- Available Online
 
Professor Siobhán McClean

Quinn, C., Tomás-Cortázar, J., Ofioritse, O., Cosgrave, J., Purcell, C., McAloon, C., et al. (2023). Correction to: GlnH, a Novel Antigen That Offers Partial Protection against Verocytotoxigenic Escherichia coli Infection (Vaccines, (2023), 11, 1, (175), 10.3390/vaccines11010175). Vaccines, 11(9). doi:10.3390/vaccines11091414

- Available Online
 

Jenkins, H., MacLean, L., McClean, S., Cooke, G., Devereux, M., Howe, O., et al. (2023). Structural and solution speciation studies on selected [Cu(NN)(OO)] complexes and an investigation of their biomimetic activity, ROS generation and their cytotoxicity in normoxic, hypoxic and anoxic environments in MCF-7 breast cancer-derived cells. Journal of Inorganic Biochemistry, 249. doi:10.1016/j.jinorgbio.2023.112383

- Available Online
 

Tomás-Cortázar, J., Quinn, C., Corcoran, N., Blanco, A., Christensen, D., & McClean, S. (2024). BpOmpW antigen administered with CAF01 adjuvant stimulates comparable T cell responses to Sigma adjuvant system. Vaccine: X, 17. doi:10.1016/j.jvacx.2024.100438

- Available Online
 
Assoc Professor Margaret McGee

Sheridan, R., Brennan, K., Bazou, D., O’Gorman, P., Matallanas, D., & Mc Gee, M. M. (2024). Multiple Myeloma Derived Extracellular Vesicle Uptake by Monocyte Cells Stimulates IL-6 and MMP-9 Secretion and Promotes Cancer Cell Migration and Proliferation. Cancers, 16(5). doi:10.3390/cancers16051011

- Available Online
 
Professor Wim Meijer

Nolan, T. M., Sala-Comorera, L., Reynolds, L. J., Martin, N. A., Stephens, J. H., O'Hare, G. M. P., et al. (2023). Bacteriophages from faecal contamination are an important reservoir for AMR in aquatic environments. Science of the Total Environment, 900. doi:10.1016/j.scitotenv.2023.165490

- Available Online
 

Miranda-CasoLuengo, R., Yerlikaya, Z., Luo, H., Cheng, C., Blanco, A., Haas, A., & Meijer, W. G. (2024). The N-terminal domain is required for cell surface localisation of VapA, a member of the Vap family of Rhodococcus equi virulence proteins. PLoS ONE, 19(2 February). doi:10.1371/journal.pone.0298900

- Available Online
 

Gangneux, J. P., Brandao, J., Segal, E., Arikan-Akdagli, S., Barac, A., Bertout, S., et al. (2024). Knowledge and regulation on fungal contamination of sand and water: Progress report and perspectives. Medical Mycology, 62(2). doi:10.1093/mmy/myad137

- Available Online
 

Kirchhelle, C., Lipton, M. F., Nolan, T. M., Meijer, W. G., Saha, S., & Sankaran, N. (2024). Reuse, Repurpose, and Recycle: Bacteriophages and Microbial Surveillance (1921-2023). PHAGE: Therapy, Applications, and Research, 5(1), 14-21. doi:10.1089/phage.2023.0042

- Available Online
 

Nolan, T. M., Martin, N. A., Reynolds, L. J., Sala-Comorera, L., O'Hare, G. M. P., O'Sullivan, J. J., & Meijer, W. G. (2024). Agricultural and urban practices are correlated to changes in the resistome of riverine systems. Science of the Total Environment, 927. doi:10.1016/j.scitotenv.2024.172261

- Available Online
 

Martin, N. A., Reynolds, L. J., Sala-Comorera, L., Nolan, T. M., Stephens, J. H., Gitto, A., et al. (2024). Quantitative source apportionment of faecal indicator bacteria from anthropogenic and zoogenic sources of faecal contamination. Marine Pollution Bulletin, 205. doi:10.1016/j.marpolbul.2024.116591

- Available Online
 
Dr Raul Miranda Caso Luengo

Miranda-CasoLuengo, R., Yerlikaya, Z., Luo, H., Cheng, C., Blanco, A., Haas, A., & Meijer, W. G. (2024). The N-terminal domain is required for cell surface localisation of VapA, a member of the Vap family of Rhodococcus equi virulence proteins. PLoS ONE, 19(2 February). doi:10.1371/journal.pone.0298900

- Available Online
 
Dr Jennifer Mitchell

Drumm, S. D., Cormican, P., Owens, R. A., Mitchell, J., & Keane, O. M. (2023). Immunoproteomic analysis of the serum IgG response to cell wall-associated proteins of Staphylococcus aureus strains belonging to CC97 and CC151. Veterinary research, 54(1), 79. doi:10.1186/s13567-023-01212-7

- Available Online
 
Professor Cormac Murphy

Dobson, L. S., Zhang, Q., McKay, B. A., Oke, O., Isanbor, C., Khan, M. F., et al. (2023). Aryl (ß,ß',ß"-Trifluoro)-tert-butyl: A Candidate Motif for the Discovery of Bioactives. Organic Letters, 25(37), 6802-6807. doi:10.1021/acs.orglett.3c02236

- Available Online
 

Hof, C., Khan, M. F., & Murphy, C. D. (2023). Endogenous production of 2-phenylethanol by Cunninghamella echinulata inhibits biofilm growth of the fungus. Fungal Biology, 127(10-11), 1384-1388. doi:10.1016/j.funbio.2023.10.001

- Available Online
 

Hof, C., Khan, M. F., & Murphy, C. (2023). Endogenous production of 2-phenylethanol by Cunninghamella echinulata inhibits biofilm growth of the fungus. Fungal Biology, 127, 1384-1388. doi:10.1016/j.funbio.2023.10.001

- Available Online
 

Khan, M. F., Hof, C., Niemcová, P., & Murphy, C. D. (2023). Recent advances in fungal xenobiotic metabolism: enzymes and applications. World Journal of Microbiology and Biotechnology, 39(11). doi:10.1007/s11274-023-03737-7

- Available Online
 

Karamanis, P., Muldoon, J., Murphy, C. D., & Rubini, M. (2024). Total synthesis of antifungal lipopeptide iturin A analogues and evaluation of their bioactivity against F. graminearum. Journal of Peptide Science, 30(6). doi:10.1002/psc.3569

- Available Online
 

Murphy, C., Niemcova, P., O'Hagan, D., Tarui, A., Piscelli, B., Al-Maharik, N., et al. (2024). Synthesis and Analysis of (?, ?', ?'', - Trifluoro)neopentyl (TFNP) Aryl ethers as a Polar Aliphatic Motif. Chemistry - A European Journal. doi:10.1002/chem.202402532

- Available Online
 
Dr Tanja Narancic

Cerrone, F., Zhou, B., Mouren, A., Avérous, L., Conroy, S., Simpson, J. C., et al. (2023). Pseudomonas umsongensis GO16 as a platform for the in vivo synthesis of short and medium chain length polyhydroxyalkanoate blends. Bioresource Technology, 387. doi:10.1016/j.biortech.2023.129668

- Available Online
 

Kelly, S., Tham, J. L., McKeever, K., Dillon, E., O’Connell, D., Scholz, D., et al. (2024). Comprehensive Proteomics Analysis of Polyhydroxyalkanoate (PHA) Biology in Pseudomonas putida KT2440: The Outer Membrane Lipoprotein OprL is a Newly Identified Phasin. Molecular and Cellular Proteomics, 23(5). doi:10.1016/j.mcpro.2024.100765

- Available Online
 
Mr Kaushik Narasimhan

Comini, G., Kelly, R., Jarrin, S., Patton, T., Narasimhan, K., Pandit, A., et al. (2024). Survival and maturation of human induced pluripotent stem cell-derived dopaminergic progenitors in the parkinsonian rat brain is enhanced by transplantation in a neurotrophin-enriched hydrogel.. Journal of neural engineering, 21(2). doi:10.1088/1741-2552/ad33b2

- Available Online
 

Hakami, A., Narasimhan, K., Comini, G., Thiele, J., Werner, C., Dowd, E., & Newland, B. (2024). Cryogel microcarriers for sustained local delivery of growth factors to the brain.. Journal of controlled release : official journal of the Controlled Release Society, 369, 404-419. doi:10.1016/j.jconrel.2024.03.023

- Available Online
 

Patton, T., Comini, G., Narasimhan, K., Cairns, A. G., Ådén, J., Almqvist, F., et al. (2024). Intra-striatal infusion of the small molecule alpha-synuclein aggregator, FN075, does not enhance parkinsonism in a subclinical AAV-alpha-synuclein rat model.. The European journal of neuroscience, 60(6), 5234-5248. doi:10.1111/ejn.16493

- Available Online
 
Assoc Professor David O'Connell

Kelly, S., Tham, J. L., McKeever, K., Dillon, E., O’Connell, D., Scholz, D., et al. (2024). Comprehensive Proteomics Analysis of Polyhydroxyalkanoate (PHA) Biology in Pseudomonas putida KT2440: The Outer Membrane Lipoprotein OprL is a Newly Identified Phasin. Molecular and Cellular Proteomics, 23(5). doi:10.1016/j.mcpro.2024.100765

- Available Online
 

Lynch, C. D., Cerrone, F., O'Connor, K. E., & O'Connell, D. J. (2024). Feeding secondary fermentations with mammalian and fungal culture waste streams increases productivity and resource efficiency. RSC Sustainability, 2(6), 1868-1882. doi:10.1039/d3su00483j

- Available Online
 

Murphy, L., Lynch, C., & O'Connell, D. J. (2024). Valorisation of Spent Yeast Fermentation Media through Compositional-Analysis-Directed Supplementation. Applied Microbiology, 4(2), 959-971. doi:10.3390/applmicrobiol4020065

- Available Online
 

Pajenda, S., Gerges, D., Wagner, L., O’Connell, D., Aiad, M., Imre, R., et al. (2024). Identification of Pathogenic Pathways for Recurrence of Focal Segmental Glomerulosclerosis after Kidney Transplantation. Diagnostics, 14(15). doi:10.3390/diagnostics14151591

- Available Online
 
Professor John O'Connor

Moreton, N., Puzio, M., McCormack, J., & O'Connor, J. J. (2023). The effects of prolyl hydroxylase inhibition during and post, hypoxia, oxygen glucose deprivation and oxidative stress, in isolated rat hippocampal slices. Brain Research Bulletin, 205. doi:10.1016/j.brainresbull.2023.110822

- Available Online
 

Matheoudakis, K., & O'Connor, J. J. (2024). Modulatory and protective effects of prolyl hydroxylase domain inhibitors in the central nervous system. Advances in Pharmacology. doi:10.1016/bs.apha.2024.10.006

- Available Online
 
Professor Kevin O'Connor

Cerrone, F., Zhou, B., Mouren, A., Avérous, L., Conroy, S., Simpson, J. C., et al. (2023). Pseudomonas umsongensis GO16 as a platform for the in vivo synthesis of short and medium chain length polyhydroxyalkanoate blends. Bioresource Technology, 387. doi:10.1016/j.biortech.2023.129668

- Available Online
 

Kacanski, M., Stelzer, F., Walsh, M., Kenny, S., O'Connor, K., & Neureiter, M. (2023). Pilot-scale production of mcl-PHA by Pseudomonas citronellolis using acetic acid as the sole carbon source. New Biotechnology, 78, 68-75. doi:10.1016/j.nbt.2023.10.003

- Available Online
 

Bruch, M., Sanchez-Velandia, J. E., Rodríguez-Pereira, J., Rich, M., Pearcy, N., Narancic, T., et al. (2024). Upcycling atmospheric CO<inf>2</inf> to polyhydroxyalkanoates via sequential chemo-biocatalytic processes. Green Chemistry. doi:10.1039/d4gc04228j

- Available Online
 

Dias, K. M. M., Oliveira, C. H., Calderano, A. A., Rostagno, H. S., O’Connor, K. E., Davis, R., et al. (2024). Effects of Hydroxytyrosol Supplementation on Performance, Fat and Blood Parameters of Broiler Chickens. Animals, 14(1). doi:10.3390/ani14010119

- Available Online
 

Rubhara, T., Gaffey, J., Hunt, G., Murphy, F., O’Connor, K., Buckley, E., & Vergara, L. A. (2024). A Business Case for Climate Neutrality in Pasture-Based Dairy Production Systems in Ireland: Evidence from Farm Zero C. Sustainability (Switzerland), 16(3). doi:10.3390/su16031028

- Available Online
 

Dias, K. M. M., Oliveira, C. H., Calderano, A. A., Rostagno, H. S., Gomes, K. M., O’Connor, K. E., et al. (2024). Dietary Hydroxytyrosol Supplementation on Growth Performance, Gut Morphometry, and Oxidative and Inflammatory Status in LPS-Challenged Broilers. Animals, 14(6). doi:10.3390/ani14060871

- Available Online
 

Kelly, S., Tham, J. L., McKeever, K., Dillon, E., O’Connell, D., Scholz, D., et al. (2024). Comprehensive Proteomics Analysis of Polyhydroxyalkanoate (PHA) Biology in Pseudomonas putida KT2440: The Outer Membrane Lipoprotein OprL is a Newly Identified Phasin. Molecular and Cellular Proteomics, 23(5). doi:10.1016/j.mcpro.2024.100765

- Available Online
 

Lynch, C. D., Cerrone, F., O'Connor, K. E., & O'Connell, D. J. (2024). Feeding secondary fermentations with mammalian and fungal culture waste streams increases productivity and resource efficiency. RSC Sustainability, 2(6), 1868-1882. doi:10.1039/d3su00483j

- Available Online
 
Assoc Professor Tadhg Ó'Cróinín

Zermeño-Pérez, D., Chouirfa, H., Rodriguez, B. J., Dürig, T., Duffy, P., & Cróinín, T. O. (2024). Bioresorbable Polyester Coatings with Antifouling and Antimicrobial Properties for Prevention of Biofilm Formation in Early Stage Infections on Ti6Al4V Hard-Tissue Implants. ACS Applied Bio Materials, 7(8), 5728-5739. doi:10.1021/acsabm.4c00832

- Available Online
 
Ms Eve O'Reilly

O’Reilly, E., Khalifa, K., Cosgrave, J., Azam, H., Prencipe, M., Simpson, J. C., et al. (2023). Cannabidiol Inhibits the Proliferation and Invasiveness of Prostate Cancer Cells. Journal of Natural Products, 86(9), 2151-2161. doi:10.1021/acs.jnatprod.3c00363

- Available Online
 
Assoc Professor Niamh O'Sullivan

Garcia-Pardo, M. E., Simpson, J. C., & O’Sullivan, N. C. (2024). An Automated Imaging-Based Screen for Genetic Modulators of ER Organisation in Cultured Human Cells. Cells, 13(7). doi:10.3390/cells13070577

- Available Online
 
Dr Maria Prencipe

O’Reilly, E., Khalifa, K., Cosgrave, J., Azam, H., Prencipe, M., Simpson, J. C., et al. (2023). Cannabidiol Inhibits the Proliferation and Invasiveness of Prostate Cancer Cells. Journal of Natural Products, 86(9), 2151-2161. doi:10.1021/acs.jnatprod.3c00363

- Available Online
 
Mr Sean Quinlan

Sanchez-Brualla, I., Ghosh, A., Gibatova, V. A., Quinlan, S., Witherspoon, E., Vicini, S., & Forcelli, P. A. (2023). Phenobarbital does not worsen outcomes of neonatal hypoxia on hippocampal LTP on rats.. Frontiers in neurology, 14, 1295934. doi:10.3389/fneur.2023.1295934

- Available Online
 

Ghosh, A., Quinlan, S., & Forcelli, P. A. (2024). Anti-seizure medication-induced developmental cell death in neonatal rats is unaltered by history of hypoxia.. Epilepsy research, 201, 107318. doi:10.1016/j.eplepsyres.2024.107318

- Available Online
 

Quinlan, S., Khan, T., McFall, D., Campos-Rodriguez, C., & Forcelli, P. A. (2024). Early life phenobarbital exposure dysregulates the hippocampal transcriptome.. Frontiers in pharmacology, 15, 1340691. doi:10.3389/fphar.2024.1340691

- Available Online
 

Quinlan, S., Witherspoon, E., & Forcelli, P. A. (2024). Padsevonil suppresses seizures without inducing cell death in neonatal rats.. Pharmacological reports : PR, 76(5), 1055-1066. doi:10.1007/s43440-024-00628-y

- Available Online
 
Dr Jens Rauch

Iglesias-Martinez, L. F., Rauch, N., Wynne, K., McCann, B., Kolch, W., & Rauch, J. (2023). Interactome dynamics of RAF1-BRAF kinase monomers and dimers. Scientific Data, 10(1). doi:10.1038/s41597-023-02115-0

- Available Online
 
Dr Emmanuel Reynaud

Souza, A., Parnell, M., Rodriguez, B. J., & Reynaud, E. (2023). Role of pH and Crosslinking Ions on Cell Viability and Metabolic Activity in Alginate-gelatin 3D Prints. doi:10.20944/preprints202309.1086.v1

- Available Online
 

Souza, A., Parnell, M., Rodriguez, B. J., & Reynaud, E. G. (2023). Role of pH and Crosslinking Ions on Cell Viability and Metabolic Activity in Alginate–Gelatin 3D Prints. Gels, 9(11). doi:10.3390/gels9110853

- Available Online
 

Torres-Leguizamon, M., Favaro, J., Coello, D., Reynaud, E. G., Néfau, T., & Duplessy, C. (2023). Remote harm reduction services are key solutions to reduce the impact of COVID-19-like crises on people who use drugs: evidence from two independent structures in France and in the USA. Harm Reduction Journal, 20(1). doi:10.1186/s12954-023-00732-x

- Available Online
 

Reynaud, E. G., & Tomancák, P. (2024). Preface. Light Sheet Fluorescence Microscopy, xxi-xxii.

 

Singh, K., Wychowaniec, J. K., Edwards-Gayle, C. J. C., Reynaud, E. G., Rodriguez, B. J., & Brougham, D. F. (2024). Structure-dynamics correlations in composite PF127-PEG-based hydrogels; cohesive/hydrophobic interactions determine phase and rheology and identify the role of micelle concentration in controlling 3D extrusion printability. Journal of Colloid and Interface Science, 660, 302-313. doi:10.1016/j.jcis.2023.12.151

- Available Online

Burke, N., Müller, G., Saggiomo, V., Hassett, A. R., Mutterer, J., Ó Súilleabháin, P., et al. (2024). EnderScope: A low-cost 3D printer-based scanning microscope for microplastic detection. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 382(2274). doi:10.1098/rsta.2023.0214

- Available Online

Souza, A., Kevin, M., Rodriguez, B. J., & Reynaud, E. G. (2024). The use of fluid-phase 3D printing to pattern alginate-gelatin hydrogel properties to guide cell growth and behaviour in vitro. Biomedical Materials (Bristol), 19(4). doi:10.1088/1748-605X/ad51bf

- Available Online

Krupa, I., Treacy, N. J., Clerkin, S., Davis, J. L., Miller, A. F., Saiani, A., et al. (2024). Protocol for the Growth and Maturation of hiPSC-Derived Kidney Organoids using Mechanically Defined Hydrogels. Current Protocols, 4(7). doi:10.1002/cpz1.1096

- Available Online
Dr Julen Tomás Cortázar

Quinn, C., Tomás-Cortázar, J., Ofioritse, O., Cosgrave, J., Purcell, C., McAloon, C., et al. (2023). Correction to: GlnH, a Novel Antigen That Offers Partial Protection against Verocytotoxigenic Escherichia coli Infection (Vaccines, (2023), 11, 1, (175), 10.3390/vaccines11010175). Vaccines, 11(9). doi:10.3390/vaccines11091414

- Available Online

Tomás-Cortázar, J., Quinn, C., Corcoran, N., Blanco, A., Christensen, D., & McClean, S. (2024). BpOmpW antigen administered with CAF01 adjuvant stimulates comparable T cell responses to Sigma adjuvant system. Vaccine: X, 17. doi:10.1016/j.jvacx.2024.100438

- Available Online
Dr Leticia Villalba

de Diego-Garcia, L., Brennan, G. P., Auer, T., Menendez-Mendez, A., Parras, A., Martin-Gil, A., et al. (2023). CPEB4–CLOCK crosstalk during temporal lobe epilepsy. Epilepsia, 64(10), 2827-2840. doi:10.1111/epi.17736

- Available Online
Dr Luisa Weiss

Kelliher, S., Gamba, S., Weiss, L., Marchetti, M., Schieppati, F., Ní Áinle, F., et al. (2023). OC 56.1 Platelets as Versatile Effectors of Thromboinflammation: An MPN Multi-Omics Collaborative. Research and Practice in Thrombosis and Haemostasis, 7, 100485. doi:10.1016/j.rpth.2023.100485

- Available Online

Kenny, M., Shukla, R., Weiss, L., Fouhy, E., Murphy, C., Ní Áinle, F., et al. (2023). PB1520 Deep Learning Extracts Embedded Signatures Associated with Pregnancy and Preeclampsia from Circulating Vesicle Profiles. Research and Practice in Thrombosis and Haemostasis, 7, 101948. doi:10.1016/j.rpth.2023.101948

- Available Online

Weiss, L., Szklanna, P., Kelliher, S., Wynne, K., Blanco, A., O’Doherty, A., et al. (2023). OC 16.5 Rivaroxaban in Combination with Low-Dose Aspirin is Associated with a Reduction in Pro-Inflammatory and Pro-thrombotic Circulating Vesicle Signatures in Patients with Cardiovascular Disease. Research and Practice in Thrombosis and Haemostasis, 7, 100305. doi:10.1016/j.rpth.2023.100305

- Available Online

Weiss, L., Uhrig, W., Kelliher, S., Szklanna, P. B., Prendiville, T., Comer, S. P., et al. (2024). Proteomic analysis of extracellular vesicle cargoes mirror the cardioprotective effects of rivaroxaban in patients with venous thromboembolism. Proteomics - Clinical Applications, 18(4). doi:10.1002/prca.202300014

- Available Online

Kelliher, S., Gamba, S., Weiss, L., Shen, Z., Marchetti, M., Schieppati, F., et al. (2024). Platelet proteomic profiling reveals potential mediators of immunothrombosis and proteostasis in myeloproliferative neoplasms. Blood Advances, 8(16), 4276-4280. doi:10.1182/bloodadvances.2023012016

- Available Online
Dr Zeynep Yerlikaya

Miranda-CasoLuengo, R., Yerlikaya, Z., Luo, H., Cheng, C., Blanco, A., Haas, A., & Meijer, W. G. (2024). The N-terminal domain is required for cell surface localisation of VapA, a member of the Vap family of Rhodococcus equi virulence proteins. PLoS ONE, 19(2 February). doi:10.1371/journal.pone.0298900

- Available Online

Back to Top

Preprint

Dr Despina Bazou

Tsallos, D., Ikonen, N., Miettinen, J. J., Majumder, M. M., Eldfors, S., Västrik, I., et al. (2024). Multi-omic and functional screening reveal targetable vulnerabilities in<i>TP53</i>mutated multiple myeloma. doi:10.1101/2024.08.23.24312359

- Available Online
 
Professor Oliver Blacque

Ahmed, M., Fischer, S., Robert, K., Lange, K., Stuck, M., Best, S., et al. (2024). Two functional forms of the Meckel-Gruber syndrome protein TMEM67 generated by proteolytic cleavage by ADAMTS9 mediate Wnt signaling and ciliogenesis. doi:10.1101/2024.09.04.611229

- Available Online
 
Professor Geraldine Butler

Bergin, S., Doorley, L. A., Rybak, J. M., Wolfe, K. H., Butler, G., Cuomo, C. A., & Rogers, P. D. (2023). Analysis of clinical<i>Candida parapsilosis</i>isolates reveals copy number variation in key fluconazole resistance genes. doi:10.1101/2023.12.13.571446

- Available Online
 

Lombardi, L., Salzberg, L., Cinnéide, E., O’Brien, C., Morio, F., Turner, S., et al. (2024). Alternative sulphur metabolism in the fungal pathogen Candida parapsilosis. doi:10.21203/rs.3.rs-3951443/v1

- Available Online
 
Dr Hilary Cassidy

Podlipec, R., Sebastijanovic, A., Cassidy, H., Han, L., Danielsen, P., Cotar, P., et al. (2024). Binucleated cell formation and oncogene expression after particulate matter exposure is preceded by microtubule disruption, dysregulated cell cycle, prolonged mitosis, and septin binding. doi:10.1101/2024.01.07.574515

- Available Online
 
Dr Colm Collins

Sanctuary, M. R., Hudacheck, C. L., Jones, A. J., Murphy, B. V., Welsh, N., Klawitter, J., et al. (2024). Priming lymphocyte responsiveness and differential T cell signaling in pediatric IBD patients with<i>Cannabis</i>use. doi:10.1101/2024.07.08.602495

- Available Online
 
Dr Rebecca Henry

Wu, J., Ritzel, R., Li, Y., Jiao, Y., Doran, S., Khan, N., et al. (2023). The brain-bone marrow axis: Implications for chronic traumatic brain injury and age-related neurodegeneration. doi:10.21203/rs.3.rs-3356007/v1

- Available Online
 

Ritzel, R., Li, Y., Jiao, Y., Doran, S., Khan, N., Henry, R., et al. (2023). The brain-bone marrow axis and its implications for chronic traumatic brain injury. doi:10.21203/rs.3.rs-3356007/v2

- Available Online
 
Dr Karen Lange

Ahmed, M., Fischer, S., Robert, K., Lange, K., Stuck, M., Best, S., et al. (2024). Two functional forms of the Meckel-Gruber syndrome protein TMEM67 generated by proteolytic cleavage by ADAMTS9 mediate Wnt signaling and ciliogenesis. doi:10.1101/2024.09.04.611229

- Available Online
 
Dr Lisa Lombardi

Lombardi, L., Salzberg, L., Cinnéide, E., O’Brien, C., Morio, F., Turner, S., et al. (2024). Alternative sulphur metabolism in the fungal pathogen Candida parapsilosis. doi:10.21203/rs.3.rs-3951443/v1

- Available Online
 
Professor Patricia Maguire

Macleod, H., Weiss, L., Kelliher, S., Kevane, B., Ní Áinle, F., & Maguire, P. B. (2023). The effect of UVA light/8-methoxypsoralen exposure used in Extracorporeal Photopheresis treatment on platelets and extracellular vesicles. doi:10.1101/2023.10.18.562996

- Available Online
 

Kelliher, S., Gamba, S., Weiss, L., Shen, Z., Marchetti, M., Schieppati, F., et al. (2023). Platelet proteo-transcriptomic profiling validates mediators of thrombosis and proteostasis in patients with myeloproliferative neoplasms. doi:10.1101/2023.10.23.563619

- Available Online
 

Weiss, L., Uhrig, W., Kelliher, S., Szklanna, P., Prendiville, T., Comer, S. P., et al. (2024). Proteomic Analysis of Extracellular Vesicle Cargoes Mirror the Cardioprotective Effects of Rivaroxaban in Patients with Venous Thromboembolism. doi:10.22541/au.170663639.97074800/v1

- Available Online
 
Professor Kevin O'Connor

Lynch, C., Cerrone, F., O’Connor, K. E., & O’Connell, D. J. (2023). Feeding secondary fermentations with mammalian and fungal culture waste streams increases productivity and resource efficiency. doi:10.1101/2023.10.17.562659

- Available Online
 
Dr Julen Tomás Cortázar

Byrne, J., Gu, L., Garcia Leon, A. A., Gaillard, C. M., Saini, G., Alalwan, D., et al. (2024). Robust and Persistent B Cell Responses Following Third-Dose SARS-CoV-2 Vaccine Determine Protection from SARS-CoV-2 Infection. doi:10.2139/ssrn.4828828

- Available Online
 
Dr Luisa Weiss

Macleod, H., Weiss, L., Kelliher, S., Kevane, B., Ní Áinle, F., & Maguire, P. B. (2023). The effect of UVA light/8-methoxypsoralen exposure used in Extracorporeal Photopheresis treatment on platelets and extracellular vesicles. doi:10.1101/2023.10.18.562996

- Available Online
 

Kelliher, S., Gamba, S., Weiss, L., Shen, Z., Marchetti, M., Schieppati, F., et al. (2023). Platelet proteo-transcriptomic profiling validates mediators of thrombosis and proteostasis in patients with myeloproliferative neoplasms. doi:10.1101/2023.10.23.563619

- Available Online
 

Weiss, L., Uhrig, W., Kelliher, S., Szklanna, P., Prendiville, T., Comer, S. P., et al. (2024). Proteomic Analysis of Extracellular Vesicle Cargoes Mirror the Cardioprotective Effects of Rivaroxaban in Patients with Venous Thromboembolism. doi:10.22541/au.170663639.97074800/v1

- Available Online
 
Dr Yan Yan

Ban, Z., Yan, Y., & Dawson, K. A. (2024). Unravelling biomolecular and community grammars of RNA granules via machine learning. doi:10.1101/2024.04.06.588388

- Available Online
 

Back to Top

Presentation

Professor Patricia Maguire

Maguire, P. (2023). The AI_PREMie project: Revolutionising Healthcare with AI. Online.

 

Back to Top